Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10620 and HMPREF1058_RS10615 overlap by 4 nucleotides HMPREF1058_RS10615 and HMPREF1058_RS10610 are separated by 5 nucleotides
HMPREF1058_RS10620: HMPREF1058_RS10620 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 615,252 to 616,442
_RS10620
HMPREF1058_RS10615: HMPREF1058_RS10615 - acyl carrier protein, at 616,439 to 616,696
_RS10615
HMPREF1058_RS10610: HMPREF1058_RS10610 - beta-ACP synthase, at 616,702 to 618,432
_RS10610
Position (kb) 616
617 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 615.442 kb on - strand, within HMPREF1058_RS10620 at 615.576 kb on - strand, within HMPREF1058_RS10620 at 615.583 kb on - strand, within HMPREF1058_RS10620 at 615.591 kb on - strand, within HMPREF1058_RS10620 at 615.592 kb on + strand, within HMPREF1058_RS10620 at 615.592 kb on + strand, within HMPREF1058_RS10620 at 615.593 kb on - strand, within HMPREF1058_RS10620 at 615.593 kb on - strand, within HMPREF1058_RS10620 at 615.598 kb on - strand, within HMPREF1058_RS10620 at 615.737 kb on + strand, within HMPREF1058_RS10620 at 615.737 kb on + strand, within HMPREF1058_RS10620 at 615.737 kb on + strand, within HMPREF1058_RS10620 at 615.738 kb on - strand, within HMPREF1058_RS10620 at 615.741 kb on - strand, within HMPREF1058_RS10620 at 616.056 kb on - strand, within HMPREF1058_RS10620 at 616.065 kb on + strand, within HMPREF1058_RS10620 at 616.065 kb on + strand, within HMPREF1058_RS10620 at 616.065 kb on + strand, within HMPREF1058_RS10620 at 616.237 kb on + strand, within HMPREF1058_RS10620 at 616.237 kb on + strand, within HMPREF1058_RS10620 at 616.430 kb on - strand at 616.462 kb on - strand at 616.474 kb on + strand, within HMPREF1058_RS10615 at 616.475 kb on - strand, within HMPREF1058_RS10615 at 616.530 kb on + strand, within HMPREF1058_RS10615 at 616.531 kb on - strand, within HMPREF1058_RS10615 at 616.531 kb on - strand, within HMPREF1058_RS10615 at 616.704 kb on - strand at 616.704 kb on - strand at 616.726 kb on + strand at 616.737 kb on - strand at 616.801 kb on + strand at 616.803 kb on + strand at 616.804 kb on - strand at 616.804 kb on - strand at 616.804 kb on - strand at 616.804 kb on - strand at 616.835 kb on + strand at 616.870 kb on + strand at 616.870 kb on + strand at 616.870 kb on + strand at 616.903 kb on + strand, within HMPREF1058_RS10610 at 616.903 kb on + strand, within HMPREF1058_RS10610 at 616.903 kb on + strand, within HMPREF1058_RS10610 at 616.927 kb on + strand, within HMPREF1058_RS10610 at 617.049 kb on + strand, within HMPREF1058_RS10610 at 617.063 kb on + strand, within HMPREF1058_RS10610 at 617.145 kb on + strand, within HMPREF1058_RS10610 at 617.145 kb on + strand, within HMPREF1058_RS10610 at 617.145 kb on + strand, within HMPREF1058_RS10610 at 617.155 kb on - strand, within HMPREF1058_RS10610 at 617.286 kb on + strand, within HMPREF1058_RS10610 at 617.286 kb on + strand, within HMPREF1058_RS10610 at 617.289 kb on - strand, within HMPREF1058_RS10610 at 617.289 kb on - strand, within HMPREF1058_RS10610 at 617.347 kb on + strand, within HMPREF1058_RS10610 at 617.464 kb on - strand, within HMPREF1058_RS10610 at 617.588 kb on + strand, within HMPREF1058_RS10610 at 617.588 kb on + strand, within HMPREF1058_RS10610 at 617.589 kb on - strand, within HMPREF1058_RS10610 at 617.590 kb on + strand, within HMPREF1058_RS10610 at 617.591 kb on - strand, within HMPREF1058_RS10610
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 615,442 - HMPREF1058_RS10620 0.16 -3.0 615,576 - HMPREF1058_RS10620 0.27 -1.0 615,583 - HMPREF1058_RS10620 0.28 -0.3 615,591 - HMPREF1058_RS10620 0.28 -0.9 615,592 + HMPREF1058_RS10620 0.29 -1.6 615,592 + HMPREF1058_RS10620 0.29 -0.3 615,593 - HMPREF1058_RS10620 0.29 -0.5 615,593 - HMPREF1058_RS10620 0.29 -2.8 615,598 - HMPREF1058_RS10620 0.29 +0.2 615,737 + HMPREF1058_RS10620 0.41 -1.9 615,737 + HMPREF1058_RS10620 0.41 -1.3 615,737 + HMPREF1058_RS10620 0.41 -3.4 615,738 - HMPREF1058_RS10620 0.41 -0.2 615,741 - HMPREF1058_RS10620 0.41 -2.5 616,056 - HMPREF1058_RS10620 0.68 -1.2 616,065 + HMPREF1058_RS10620 0.68 -3.8 616,065 + HMPREF1058_RS10620 0.68 -1.1 616,065 + HMPREF1058_RS10620 0.68 +0.2 616,237 + HMPREF1058_RS10620 0.83 -1.1 616,237 + HMPREF1058_RS10620 0.83 +0.2 616,430 - -0.9 616,462 - -3.0 616,474 + HMPREF1058_RS10615 0.14 -0.1 616,475 - HMPREF1058_RS10615 0.14 -1.4 616,530 + HMPREF1058_RS10615 0.35 -0.4 616,531 - HMPREF1058_RS10615 0.36 -2.6 616,531 - HMPREF1058_RS10615 0.36 +0.6 616,704 - -2.8 616,704 - -0.3 616,726 + +0.2 616,737 - +0.5 616,801 + +0.4 616,803 + +0.8 616,804 - -2.0 616,804 - -0.7 616,804 - -3.6 616,804 - +1.2 616,835 + -0.1 616,870 + -1.7 616,870 + -1.6 616,870 + -1.2 616,903 + HMPREF1058_RS10610 0.12 +0.7 616,903 + HMPREF1058_RS10610 0.12 +0.5 616,903 + HMPREF1058_RS10610 0.12 +1.0 616,927 + HMPREF1058_RS10610 0.13 +0.5 617,049 + HMPREF1058_RS10610 0.20 -2.5 617,063 + HMPREF1058_RS10610 0.21 -1.4 617,145 + HMPREF1058_RS10610 0.26 -0.2 617,145 + HMPREF1058_RS10610 0.26 -0.6 617,145 + HMPREF1058_RS10610 0.26 +1.1 617,155 - HMPREF1058_RS10610 0.26 -2.2 617,286 + HMPREF1058_RS10610 0.34 +0.0 617,286 + HMPREF1058_RS10610 0.34 +2.9 617,289 - HMPREF1058_RS10610 0.34 +0.1 617,289 - HMPREF1058_RS10610 0.34 -0.6 617,347 + HMPREF1058_RS10610 0.37 +0.8 617,464 - HMPREF1058_RS10610 0.44 -1.7 617,588 + HMPREF1058_RS10610 0.51 -3.6 617,588 + HMPREF1058_RS10610 0.51 +0.0 617,589 - HMPREF1058_RS10610 0.51 +0.1 617,590 + HMPREF1058_RS10610 0.51 -0.9 617,591 - HMPREF1058_RS10610 0.51 -1.5
Or see this region's nucleotide sequence