Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07775

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07780 and HMPREF1058_RS07775 are separated by 4 nucleotidesHMPREF1058_RS07775 and HMPREF1058_RS07770 are separated by 2 nucleotides HMPREF1058_RS07780: HMPREF1058_RS07780 - hypothetical protein, at 131,983 to 133,890 _RS07780 HMPREF1058_RS07775: HMPREF1058_RS07775 - hypothetical protein, at 133,895 to 135,919 _RS07775 HMPREF1058_RS07770: HMPREF1058_RS07770 - O-antigen ligase family protein, at 135,922 to 137,571 _RS07770 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 132.895 kb on - strandat 132.941 kb on + strand, within HMPREF1058_RS07780at 132.945 kb on - strand, within HMPREF1058_RS07780at 132.962 kb on - strand, within HMPREF1058_RS07780at 132.965 kb on + strand, within HMPREF1058_RS07780at 132.966 kb on - strand, within HMPREF1058_RS07780at 133.022 kb on - strand, within HMPREF1058_RS07780at 133.028 kb on - strand, within HMPREF1058_RS07780at 133.028 kb on - strand, within HMPREF1058_RS07780at 133.047 kb on - strand, within HMPREF1058_RS07780at 133.094 kb on - strand, within HMPREF1058_RS07780at 133.224 kb on - strand, within HMPREF1058_RS07780at 133.224 kb on - strand, within HMPREF1058_RS07780at 133.231 kb on - strand, within HMPREF1058_RS07780at 133.299 kb on - strand, within HMPREF1058_RS07780at 133.307 kb on - strand, within HMPREF1058_RS07780at 133.313 kb on + strandat 133.313 kb on + strand, within HMPREF1058_RS07780at 133.348 kb on - strand, within HMPREF1058_RS07780at 133.350 kb on + strand, within HMPREF1058_RS07780at 133.350 kb on + strand, within HMPREF1058_RS07780at 133.410 kb on + strand, within HMPREF1058_RS07780at 133.410 kb on + strand, within HMPREF1058_RS07780at 133.411 kb on - strand, within HMPREF1058_RS07780at 133.414 kb on + strand, within HMPREF1058_RS07780at 133.414 kb on + strand, within HMPREF1058_RS07780at 133.415 kb on - strand, within HMPREF1058_RS07780at 133.415 kb on - strand, within HMPREF1058_RS07780at 133.415 kb on - strand, within HMPREF1058_RS07780at 133.423 kb on + strand, within HMPREF1058_RS07780at 133.424 kb on - strand, within HMPREF1058_RS07780at 133.470 kb on - strand, within HMPREF1058_RS07780at 133.470 kb on - strand, within HMPREF1058_RS07780at 133.470 kb on - strand, within HMPREF1058_RS07780at 133.471 kb on + strand, within HMPREF1058_RS07780at 133.472 kb on - strand, within HMPREF1058_RS07780at 133.518 kb on + strand, within HMPREF1058_RS07780at 133.707 kb on - strandat 133.707 kb on - strandat 133.707 kb on - strandat 133.708 kb on + strandat 133.708 kb on + strandat 133.729 kb on - strandat 133.772 kb on + strandat 133.772 kb on + strandat 133.861 kb on + strandat 133.941 kb on + strandat 133.942 kb on - strandat 133.946 kb on - strandat 134.041 kb on - strandat 134.089 kb on - strandat 134.095 kb on + strandat 134.118 kb on - strand, within HMPREF1058_RS07775at 134.197 kb on + strand, within HMPREF1058_RS07775at 134.249 kb on - strand, within HMPREF1058_RS07775at 134.267 kb on - strand, within HMPREF1058_RS07775at 134.301 kb on + strand, within HMPREF1058_RS07775at 134.363 kb on + strand, within HMPREF1058_RS07775at 134.374 kb on + strand, within HMPREF1058_RS07775at 134.374 kb on + strand, within HMPREF1058_RS07775at 134.386 kb on + strand, within HMPREF1058_RS07775at 134.387 kb on - strand, within HMPREF1058_RS07775at 134.400 kb on - strand, within HMPREF1058_RS07775at 134.407 kb on - strand, within HMPREF1058_RS07775at 134.479 kb on + strand, within HMPREF1058_RS07775at 134.484 kb on + strand, within HMPREF1058_RS07775at 134.563 kb on - strand, within HMPREF1058_RS07775at 134.563 kb on - strand, within HMPREF1058_RS07775at 134.577 kb on - strand, within HMPREF1058_RS07775at 134.601 kb on + strand, within HMPREF1058_RS07775at 134.736 kb on + strand, within HMPREF1058_RS07775at 134.753 kb on + strand, within HMPREF1058_RS07775at 134.753 kb on + strand, within HMPREF1058_RS07775at 134.754 kb on - strand, within HMPREF1058_RS07775at 134.804 kb on + strand, within HMPREF1058_RS07775at 134.804 kb on + strand, within HMPREF1058_RS07775at 134.805 kb on - strand, within HMPREF1058_RS07775at 134.805 kb on - strand, within HMPREF1058_RS07775at 134.810 kb on - strand, within HMPREF1058_RS07775at 134.848 kb on - strand, within HMPREF1058_RS07775at 134.866 kb on + strand, within HMPREF1058_RS07775at 134.867 kb on - strand, within HMPREF1058_RS07775at 134.870 kb on + strand, within HMPREF1058_RS07775at 134.870 kb on + strand, within HMPREF1058_RS07775at 134.912 kb on - strand, within HMPREF1058_RS07775at 134.924 kb on - strand, within HMPREF1058_RS07775at 134.995 kb on + strand, within HMPREF1058_RS07775at 134.995 kb on + strand, within HMPREF1058_RS07775at 135.001 kb on + strand, within HMPREF1058_RS07775at 135.035 kb on + strand, within HMPREF1058_RS07775at 135.036 kb on - strand, within HMPREF1058_RS07775at 135.042 kb on - strand, within HMPREF1058_RS07775at 135.066 kb on + strand, within HMPREF1058_RS07775at 135.196 kb on - strand, within HMPREF1058_RS07775at 135.212 kb on - strand, within HMPREF1058_RS07775at 135.374 kb on - strand, within HMPREF1058_RS07775at 135.400 kb on + strand, within HMPREF1058_RS07775at 135.405 kb on + strand, within HMPREF1058_RS07775at 135.405 kb on + strand, within HMPREF1058_RS07775at 135.406 kb on - strand, within HMPREF1058_RS07775at 135.406 kb on - strand, within HMPREF1058_RS07775at 135.418 kb on + strand, within HMPREF1058_RS07775at 135.419 kb on - strand, within HMPREF1058_RS07775at 135.439 kb on + strand, within HMPREF1058_RS07775at 135.447 kb on - strand, within HMPREF1058_RS07775at 135.450 kb on + strand, within HMPREF1058_RS07775at 135.451 kb on - strand, within HMPREF1058_RS07775at 135.595 kb on + strand, within HMPREF1058_RS07775at 135.743 kb on + strandat 135.751 kb on - strandat 135.756 kb on - strandat 135.821 kb on - strandat 135.898 kb on + strandat 135.899 kb on - strandat 135.939 kb on - strandat 135.943 kb on + strandat 135.959 kb on + strandat 135.967 kb on - strandat 135.967 kb on - strandat 136.000 kb on + strandat 136.001 kb on - strandat 136.055 kb on - strandat 136.055 kb on - strandat 136.094 kb on - strand, within HMPREF1058_RS07770at 136.140 kb on + strand, within HMPREF1058_RS07770at 136.140 kb on + strand, within HMPREF1058_RS07770at 136.141 kb on - strand, within HMPREF1058_RS07770at 136.161 kb on - strand, within HMPREF1058_RS07770at 136.200 kb on - strand, within HMPREF1058_RS07770at 136.297 kb on - strand, within HMPREF1058_RS07770at 136.344 kb on - strand, within HMPREF1058_RS07770at 136.374 kb on - strand, within HMPREF1058_RS07770at 136.444 kb on + strand, within HMPREF1058_RS07770at 136.465 kb on - strand, within HMPREF1058_RS07770at 136.465 kb on - strand, within HMPREF1058_RS07770at 136.483 kb on + strand, within HMPREF1058_RS07770at 136.484 kb on - strand, within HMPREF1058_RS07770at 136.485 kb on + strand, within HMPREF1058_RS07770at 136.485 kb on + strand, within HMPREF1058_RS07770at 136.486 kb on - strandat 136.523 kb on + strand, within HMPREF1058_RS07770at 136.526 kb on + strand, within HMPREF1058_RS07770at 136.700 kb on - strand, within HMPREF1058_RS07770at 136.717 kb on + strand, within HMPREF1058_RS07770at 136.736 kb on + strand, within HMPREF1058_RS07770at 136.772 kb on - strand, within HMPREF1058_RS07770at 136.830 kb on - strand, within HMPREF1058_RS07770at 136.843 kb on + strand, within HMPREF1058_RS07770at 136.843 kb on + strand, within HMPREF1058_RS07770at 136.843 kb on + strand, within HMPREF1058_RS07770at 136.844 kb on - strand, within HMPREF1058_RS07770at 136.844 kb on - strand, within HMPREF1058_RS07770at 136.844 kb on - strand, within HMPREF1058_RS07770at 136.847 kb on + strand, within HMPREF1058_RS07770at 136.847 kb on + strand, within HMPREF1058_RS07770at 136.848 kb on - strand, within HMPREF1058_RS07770at 136.889 kb on + strand, within HMPREF1058_RS07770

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
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132,895 - -0.1
132,941 + HMPREF1058_RS07780 0.50 +0.1
132,945 - HMPREF1058_RS07780 0.50 +0.3
132,962 - HMPREF1058_RS07780 0.51 +1.3
132,965 + HMPREF1058_RS07780 0.51 -0.5
132,966 - HMPREF1058_RS07780 0.52 -2.7
133,022 - HMPREF1058_RS07780 0.54 -0.2
133,028 - HMPREF1058_RS07780 0.55 -0.3
133,028 - HMPREF1058_RS07780 0.55 -0.7
133,047 - HMPREF1058_RS07780 0.56 -0.1
133,094 - HMPREF1058_RS07780 0.58 +0.2
133,224 - HMPREF1058_RS07780 0.65 -1.0
133,224 - HMPREF1058_RS07780 0.65 -0.2
133,231 - HMPREF1058_RS07780 0.65 +3.2
133,299 - HMPREF1058_RS07780 0.69 -0.7
133,307 - HMPREF1058_RS07780 0.69 -0.8
133,313 + +0.3
133,313 + HMPREF1058_RS07780 0.70 +0.6
133,348 - HMPREF1058_RS07780 0.72 -1.7
133,350 + HMPREF1058_RS07780 0.72 -1.3
133,350 + HMPREF1058_RS07780 0.72 +0.2
133,410 + HMPREF1058_RS07780 0.75 +1.6
133,410 + HMPREF1058_RS07780 0.75 +0.6
133,411 - HMPREF1058_RS07780 0.75 +0.7
133,414 + HMPREF1058_RS07780 0.75 -0.4
133,414 + HMPREF1058_RS07780 0.75 -0.7
133,415 - HMPREF1058_RS07780 0.75 -2.7
133,415 - HMPREF1058_RS07780 0.75 +1.5
133,415 - HMPREF1058_RS07780 0.75 -0.0
133,423 + HMPREF1058_RS07780 0.75 +0.0
133,424 - HMPREF1058_RS07780 0.76 +1.2
133,470 - HMPREF1058_RS07780 0.78 -1.1
133,470 - HMPREF1058_RS07780 0.78 -2.9
133,470 - HMPREF1058_RS07780 0.78 -2.2
133,471 + HMPREF1058_RS07780 0.78 -0.1
133,472 - HMPREF1058_RS07780 0.78 -1.3
133,518 + HMPREF1058_RS07780 0.80 -1.4
133,707 - -0.5
133,707 - -1.7
133,707 - +1.1
133,708 + +0.4
133,708 + +1.1
133,729 - +1.6
133,772 + +0.2
133,772 + +0.5
133,861 + -3.6
133,941 + -1.1
133,942 - -1.3
133,946 - -2.7
134,041 - -2.6
134,089 - -0.7
134,095 + -0.5
134,118 - HMPREF1058_RS07775 0.11 -0.8
134,197 + HMPREF1058_RS07775 0.15 -2.1
134,249 - HMPREF1058_RS07775 0.17 -2.7
134,267 - HMPREF1058_RS07775 0.18 -0.1
134,301 + HMPREF1058_RS07775 0.20 -3.1
134,363 + HMPREF1058_RS07775 0.23 +1.1
134,374 + HMPREF1058_RS07775 0.24 -2.0
134,374 + HMPREF1058_RS07775 0.24 +0.6
134,386 + HMPREF1058_RS07775 0.24 -3.2
134,387 - HMPREF1058_RS07775 0.24 -0.6
134,400 - HMPREF1058_RS07775 0.25 -0.4
134,407 - HMPREF1058_RS07775 0.25 -0.1
134,479 + HMPREF1058_RS07775 0.29 +0.2
134,484 + HMPREF1058_RS07775 0.29 -1.4
134,563 - HMPREF1058_RS07775 0.33 -0.1
134,563 - HMPREF1058_RS07775 0.33 -0.1
134,577 - HMPREF1058_RS07775 0.34 -2.3
134,601 + HMPREF1058_RS07775 0.35 -1.9
134,736 + HMPREF1058_RS07775 0.42 -0.4
134,753 + HMPREF1058_RS07775 0.42 -3.0
134,753 + HMPREF1058_RS07775 0.42 -0.8
134,754 - HMPREF1058_RS07775 0.42 -3.5
134,804 + HMPREF1058_RS07775 0.45 -0.6
134,804 + HMPREF1058_RS07775 0.45 -1.9
134,805 - HMPREF1058_RS07775 0.45 +0.3
134,805 - HMPREF1058_RS07775 0.45 -2.8
134,810 - HMPREF1058_RS07775 0.45 -3.1
134,848 - HMPREF1058_RS07775 0.47 -1.8
134,866 + HMPREF1058_RS07775 0.48 +0.9
134,867 - HMPREF1058_RS07775 0.48 -1.3
134,870 + HMPREF1058_RS07775 0.48 -2.3
134,870 + HMPREF1058_RS07775 0.48 +1.1
134,912 - HMPREF1058_RS07775 0.50 -0.6
134,924 - HMPREF1058_RS07775 0.51 +0.9
134,995 + HMPREF1058_RS07775 0.54 -0.8
134,995 + HMPREF1058_RS07775 0.54 -0.8
135,001 + HMPREF1058_RS07775 0.55 -2.1
135,035 + HMPREF1058_RS07775 0.56 -0.4
135,036 - HMPREF1058_RS07775 0.56 -0.2
135,042 - HMPREF1058_RS07775 0.57 +1.6
135,066 + HMPREF1058_RS07775 0.58 -0.1
135,196 - HMPREF1058_RS07775 0.64 -1.3
135,212 - HMPREF1058_RS07775 0.65 +0.5
135,374 - HMPREF1058_RS07775 0.73 -1.5
135,400 + HMPREF1058_RS07775 0.74 -1.4
135,405 + HMPREF1058_RS07775 0.75 -0.4
135,405 + HMPREF1058_RS07775 0.75 -1.8
135,406 - HMPREF1058_RS07775 0.75 +0.9
135,406 - HMPREF1058_RS07775 0.75 -0.0
135,418 + HMPREF1058_RS07775 0.75 -3.5
135,419 - HMPREF1058_RS07775 0.75 -3.6
135,439 + HMPREF1058_RS07775 0.76 -1.9
135,447 - HMPREF1058_RS07775 0.77 +0.3
135,450 + HMPREF1058_RS07775 0.77 -1.3
135,451 - HMPREF1058_RS07775 0.77 -1.8
135,595 + HMPREF1058_RS07775 0.84 -2.0
135,743 + +0.1
135,751 - +1.2
135,756 - -0.3
135,821 - +1.8
135,898 + -0.9
135,899 - +0.8
135,939 - +2.3
135,943 + -0.3
135,959 + -0.1
135,967 - -2.7
135,967 - -0.4
136,000 + +2.1
136,001 - +1.6
136,055 - +0.2
136,055 - +0.5
136,094 - HMPREF1058_RS07770 0.10 +0.2
136,140 + HMPREF1058_RS07770 0.13 -0.7
136,140 + HMPREF1058_RS07770 0.13 -0.9
136,141 - HMPREF1058_RS07770 0.13 -3.4
136,161 - HMPREF1058_RS07770 0.14 +0.1
136,200 - HMPREF1058_RS07770 0.17 +0.7
136,297 - HMPREF1058_RS07770 0.23 -2.9
136,344 - HMPREF1058_RS07770 0.26 -1.3
136,374 - HMPREF1058_RS07770 0.27 -0.9
136,444 + HMPREF1058_RS07770 0.32 -1.0
136,465 - HMPREF1058_RS07770 0.33 +1.0
136,465 - HMPREF1058_RS07770 0.33 -0.4
136,483 + HMPREF1058_RS07770 0.34 -0.6
136,484 - HMPREF1058_RS07770 0.34 +0.6
136,485 + HMPREF1058_RS07770 0.34 -0.2
136,485 + HMPREF1058_RS07770 0.34 -1.9
136,486 - +1.9
136,523 + HMPREF1058_RS07770 0.36 -1.9
136,526 + HMPREF1058_RS07770 0.37 -0.7
136,700 - HMPREF1058_RS07770 0.47 +0.3
136,717 + HMPREF1058_RS07770 0.48 -2.5
136,736 + HMPREF1058_RS07770 0.49 -1.1
136,772 - HMPREF1058_RS07770 0.52 -0.1
136,830 - HMPREF1058_RS07770 0.55 -0.8
136,843 + HMPREF1058_RS07770 0.56 +0.1
136,843 + HMPREF1058_RS07770 0.56 -0.4
136,843 + HMPREF1058_RS07770 0.56 +0.3
136,844 - HMPREF1058_RS07770 0.56 +0.6
136,844 - HMPREF1058_RS07770 0.56 -1.7
136,844 - HMPREF1058_RS07770 0.56 +0.8
136,847 + HMPREF1058_RS07770 0.56 +0.6
136,847 + HMPREF1058_RS07770 0.56 -2.4
136,848 - HMPREF1058_RS07770 0.56 -2.4
136,889 + HMPREF1058_RS07770 0.59 -0.8

Or see this region's nucleotide sequence