Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07620

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07630 and HMPREF1058_RS07625 are separated by 154 nucleotidesHMPREF1058_RS07625 and HMPREF1058_RS07620 are separated by 160 nucleotidesHMPREF1058_RS07620 and HMPREF1058_RS07615 are separated by 105 nucleotides HMPREF1058_RS07630: HMPREF1058_RS07630 - hypothetical protein, at 171,944 to 172,636 _RS07630 HMPREF1058_RS07625: HMPREF1058_RS07625 - hypothetical protein, at 172,791 to 172,991 _RS07625 HMPREF1058_RS07620: HMPREF1058_RS07620 - long-chain fatty acid--CoA ligase, at 173,152 to 174,825 _RS07620 HMPREF1058_RS07615: HMPREF1058_RS07615 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 174,931 to 176,247 _RS07615 Position (kb) 173 174 175Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 172.165 kb on + strand, within HMPREF1058_RS07630at 172.165 kb on + strand, within HMPREF1058_RS07630at 172.167 kb on + strand, within HMPREF1058_RS07630at 172.167 kb on + strand, within HMPREF1058_RS07630at 172.168 kb on - strand, within HMPREF1058_RS07630at 172.168 kb on - strand, within HMPREF1058_RS07630at 172.283 kb on + strand, within HMPREF1058_RS07630at 172.349 kb on - strand, within HMPREF1058_RS07630at 172.385 kb on + strand, within HMPREF1058_RS07630at 172.415 kb on + strand, within HMPREF1058_RS07630at 172.415 kb on + strand, within HMPREF1058_RS07630at 172.441 kb on + strand, within HMPREF1058_RS07630at 172.441 kb on + strand, within HMPREF1058_RS07630at 172.489 kb on + strand, within HMPREF1058_RS07630at 172.493 kb on + strand, within HMPREF1058_RS07630at 172.546 kb on + strand, within HMPREF1058_RS07630at 172.547 kb on - strand, within HMPREF1058_RS07630at 172.547 kb on - strand, within HMPREF1058_RS07630at 172.671 kb on + strandat 172.683 kb on - strandat 172.687 kb on + strandat 172.720 kb on + strandat 172.721 kb on - strandat 172.792 kb on + strandat 172.792 kb on + strandat 172.806 kb on - strandat 172.882 kb on - strand, within HMPREF1058_RS07625at 172.965 kb on + strand, within HMPREF1058_RS07625at 173.014 kb on - strandat 173.020 kb on - strandat 173.111 kb on - strandat 173.163 kb on + strandat 173.174 kb on + strandat 173.175 kb on - strandat 173.175 kb on - strandat 173.252 kb on + strandat 173.359 kb on + strand, within HMPREF1058_RS07620at 173.362 kb on + strand, within HMPREF1058_RS07620at 173.389 kb on + strand, within HMPREF1058_RS07620at 173.389 kb on + strand, within HMPREF1058_RS07620at 173.390 kb on - strand, within HMPREF1058_RS07620at 173.396 kb on - strand, within HMPREF1058_RS07620at 173.419 kb on - strand, within HMPREF1058_RS07620at 173.421 kb on + strand, within HMPREF1058_RS07620at 173.422 kb on - strand, within HMPREF1058_RS07620at 173.422 kb on - strand, within HMPREF1058_RS07620at 173.454 kb on + strand, within HMPREF1058_RS07620at 173.466 kb on + strand, within HMPREF1058_RS07620at 173.467 kb on - strand, within HMPREF1058_RS07620at 173.501 kb on - strand, within HMPREF1058_RS07620at 173.501 kb on - strand, within HMPREF1058_RS07620at 173.502 kb on + strand, within HMPREF1058_RS07620at 173.524 kb on + strand, within HMPREF1058_RS07620at 173.525 kb on - strand, within HMPREF1058_RS07620at 173.525 kb on - strand, within HMPREF1058_RS07620at 173.529 kb on + strand, within HMPREF1058_RS07620at 173.595 kb on + strand, within HMPREF1058_RS07620at 173.595 kb on + strand, within HMPREF1058_RS07620at 173.596 kb on - strand, within HMPREF1058_RS07620at 173.597 kb on + strand, within HMPREF1058_RS07620at 173.598 kb on - strand, within HMPREF1058_RS07620at 173.598 kb on - strand, within HMPREF1058_RS07620at 173.598 kb on - strand, within HMPREF1058_RS07620at 173.627 kb on - strand, within HMPREF1058_RS07620at 173.633 kb on - strand, within HMPREF1058_RS07620at 173.649 kb on + strand, within HMPREF1058_RS07620at 173.652 kb on - strand, within HMPREF1058_RS07620at 173.713 kb on + strand, within HMPREF1058_RS07620at 173.713 kb on + strand, within HMPREF1058_RS07620at 173.715 kb on + strand, within HMPREF1058_RS07620at 173.715 kb on + strand, within HMPREF1058_RS07620at 173.736 kb on - strand, within HMPREF1058_RS07620at 173.854 kb on - strand, within HMPREF1058_RS07620at 173.900 kb on + strand, within HMPREF1058_RS07620at 173.901 kb on - strand, within HMPREF1058_RS07620at 173.914 kb on + strand, within HMPREF1058_RS07620at 173.917 kb on + strand, within HMPREF1058_RS07620at 173.918 kb on - strand, within HMPREF1058_RS07620at 173.980 kb on - strand, within HMPREF1058_RS07620at 173.980 kb on - strand, within HMPREF1058_RS07620at 173.995 kb on - strand, within HMPREF1058_RS07620at 173.995 kb on - strand, within HMPREF1058_RS07620at 174.004 kb on + strand, within HMPREF1058_RS07620at 174.016 kb on - strand, within HMPREF1058_RS07620at 174.016 kb on - strand, within HMPREF1058_RS07620at 174.135 kb on - strand, within HMPREF1058_RS07620at 174.164 kb on - strand, within HMPREF1058_RS07620at 174.275 kb on + strand, within HMPREF1058_RS07620at 174.276 kb on - strand, within HMPREF1058_RS07620at 174.276 kb on - strand, within HMPREF1058_RS07620at 174.313 kb on - strand, within HMPREF1058_RS07620at 174.314 kb on + strand, within HMPREF1058_RS07620at 174.321 kb on + strand, within HMPREF1058_RS07620at 174.332 kb on + strand, within HMPREF1058_RS07620at 174.333 kb on - strand, within HMPREF1058_RS07620at 174.333 kb on - strand, within HMPREF1058_RS07620at 174.460 kb on + strand, within HMPREF1058_RS07620at 174.461 kb on - strand, within HMPREF1058_RS07620at 174.571 kb on - strand, within HMPREF1058_RS07620at 174.582 kb on + strand, within HMPREF1058_RS07620at 174.594 kb on + strand, within HMPREF1058_RS07620at 174.609 kb on - strand, within HMPREF1058_RS07620at 174.631 kb on - strand, within HMPREF1058_RS07620at 174.636 kb on + strand, within HMPREF1058_RS07620at 174.641 kb on - strand, within HMPREF1058_RS07620at 174.646 kb on - strand, within HMPREF1058_RS07620at 174.650 kb on - strand, within HMPREF1058_RS07620at 174.695 kb on - strandat 174.704 kb on - strandat 174.729 kb on + strandat 174.729 kb on + strandat 174.730 kb on - strandat 174.750 kb on - strandat 174.799 kb on + strandat 174.799 kb on + strandat 174.799 kb on + strandat 174.808 kb on - strandat 174.842 kb on + strandat 174.862 kb on - strandat 174.885 kb on + strandat 174.894 kb on + strandat 175.041 kb on + strandat 175.043 kb on + strandat 175.086 kb on + strand, within HMPREF1058_RS07615at 175.089 kb on + strand, within HMPREF1058_RS07615at 175.172 kb on + strand, within HMPREF1058_RS07615at 175.189 kb on + strand, within HMPREF1058_RS07615at 175.341 kb on + strand, within HMPREF1058_RS07615at 175.670 kb on + strand, within HMPREF1058_RS07615at 175.675 kb on + strand, within HMPREF1058_RS07615at 175.675 kb on + strand, within HMPREF1058_RS07615at 175.675 kb on + strand, within HMPREF1058_RS07615

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
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172,165 + HMPREF1058_RS07630 0.32 -2.6
172,165 + HMPREF1058_RS07630 0.32 +0.2
172,167 + HMPREF1058_RS07630 0.32 +1.9
172,167 + HMPREF1058_RS07630 0.32 +1.1
172,168 - HMPREF1058_RS07630 0.32 +0.9
172,168 - HMPREF1058_RS07630 0.32 +0.2
172,283 + HMPREF1058_RS07630 0.49 +0.1
172,349 - HMPREF1058_RS07630 0.58 +0.2
172,385 + HMPREF1058_RS07630 0.64 -3.9
172,415 + HMPREF1058_RS07630 0.68 +0.3
172,415 + HMPREF1058_RS07630 0.68 -1.5
172,441 + HMPREF1058_RS07630 0.72 +0.3
172,441 + HMPREF1058_RS07630 0.72 -2.6
172,489 + HMPREF1058_RS07630 0.79 +0.5
172,493 + HMPREF1058_RS07630 0.79 -0.6
172,546 + HMPREF1058_RS07630 0.87 -0.9
172,547 - HMPREF1058_RS07630 0.87 -0.3
172,547 - HMPREF1058_RS07630 0.87 -1.5
172,671 + +0.1
172,683 - -2.1
172,687 + +1.4
172,720 + +0.6
172,721 - +3.1
172,792 + -0.5
172,792 + +0.9
172,806 - -0.2
172,882 - HMPREF1058_RS07625 0.45 +1.0
172,965 + HMPREF1058_RS07625 0.87 -1.5
173,014 - +0.2
173,020 - +1.4
173,111 - +1.3
173,163 + -0.5
173,174 + -1.7
173,175 - -3.0
173,175 - +0.8
173,252 + -2.3
173,359 + HMPREF1058_RS07620 0.12 +1.2
173,362 + HMPREF1058_RS07620 0.13 +2.3
173,389 + HMPREF1058_RS07620 0.14 +0.8
173,389 + HMPREF1058_RS07620 0.14 +0.8
173,390 - HMPREF1058_RS07620 0.14 +0.4
173,396 - HMPREF1058_RS07620 0.15 -0.2
173,419 - HMPREF1058_RS07620 0.16 +0.7
173,421 + HMPREF1058_RS07620 0.16 -1.0
173,422 - HMPREF1058_RS07620 0.16 +0.1
173,422 - HMPREF1058_RS07620 0.16 +0.5
173,454 + HMPREF1058_RS07620 0.18 +1.0
173,466 + HMPREF1058_RS07620 0.19 -0.6
173,467 - HMPREF1058_RS07620 0.19 +0.1
173,501 - HMPREF1058_RS07620 0.21 -1.1
173,501 - HMPREF1058_RS07620 0.21 +1.4
173,502 + HMPREF1058_RS07620 0.21 -0.7
173,524 + HMPREF1058_RS07620 0.22 -3.2
173,525 - HMPREF1058_RS07620 0.22 +1.3
173,525 - HMPREF1058_RS07620 0.22 +0.6
173,529 + HMPREF1058_RS07620 0.23 +1.4
173,595 + HMPREF1058_RS07620 0.26 +1.1
173,595 + HMPREF1058_RS07620 0.26 -1.0
173,596 - HMPREF1058_RS07620 0.27 -1.0
173,597 + HMPREF1058_RS07620 0.27 +0.3
173,598 - HMPREF1058_RS07620 0.27 -1.8
173,598 - HMPREF1058_RS07620 0.27 +0.7
173,598 - HMPREF1058_RS07620 0.27 +0.8
173,627 - HMPREF1058_RS07620 0.28 +1.0
173,633 - HMPREF1058_RS07620 0.29 -0.5
173,649 + HMPREF1058_RS07620 0.30 +0.0
173,652 - HMPREF1058_RS07620 0.30 -1.1
173,713 + HMPREF1058_RS07620 0.34 -0.2
173,713 + HMPREF1058_RS07620 0.34 -0.3
173,715 + HMPREF1058_RS07620 0.34 +0.7
173,715 + HMPREF1058_RS07620 0.34 +0.4
173,736 - HMPREF1058_RS07620 0.35 +1.3
173,854 - HMPREF1058_RS07620 0.42 +1.2
173,900 + HMPREF1058_RS07620 0.45 -2.2
173,901 - HMPREF1058_RS07620 0.45 -0.6
173,914 + HMPREF1058_RS07620 0.46 -0.4
173,917 + HMPREF1058_RS07620 0.46 -2.2
173,918 - HMPREF1058_RS07620 0.46 -1.1
173,980 - HMPREF1058_RS07620 0.49 -0.3
173,980 - HMPREF1058_RS07620 0.49 +0.7
173,995 - HMPREF1058_RS07620 0.50 -0.2
173,995 - HMPREF1058_RS07620 0.50 +0.9
174,004 + HMPREF1058_RS07620 0.51 +0.2
174,016 - HMPREF1058_RS07620 0.52 -0.9
174,016 - HMPREF1058_RS07620 0.52 -0.1
174,135 - HMPREF1058_RS07620 0.59 -2.2
174,164 - HMPREF1058_RS07620 0.60 +0.8
174,275 + HMPREF1058_RS07620 0.67 -0.5
174,276 - HMPREF1058_RS07620 0.67 -2.7
174,276 - HMPREF1058_RS07620 0.67 +0.3
174,313 - HMPREF1058_RS07620 0.69 +0.5
174,314 + HMPREF1058_RS07620 0.69 +0.9
174,321 + HMPREF1058_RS07620 0.70 -0.2
174,332 + HMPREF1058_RS07620 0.70 +1.0
174,333 - HMPREF1058_RS07620 0.71 +0.5
174,333 - HMPREF1058_RS07620 0.71 -1.5
174,460 + HMPREF1058_RS07620 0.78 -1.5
174,461 - HMPREF1058_RS07620 0.78 +0.5
174,571 - HMPREF1058_RS07620 0.85 +1.3
174,582 + HMPREF1058_RS07620 0.85 -0.5
174,594 + HMPREF1058_RS07620 0.86 +1.6
174,609 - HMPREF1058_RS07620 0.87 +1.2
174,631 - HMPREF1058_RS07620 0.88 -1.0
174,636 + HMPREF1058_RS07620 0.89 -0.1
174,641 - HMPREF1058_RS07620 0.89 +0.4
174,646 - HMPREF1058_RS07620 0.89 +0.4
174,650 - HMPREF1058_RS07620 0.89 -2.1
174,695 - -2.4
174,704 - -2.1
174,729 + -1.4
174,729 + -0.5
174,730 - -1.7
174,750 - +0.6
174,799 + -0.3
174,799 + +0.5
174,799 + -2.9
174,808 - -2.7
174,842 + +0.8
174,862 - +0.4
174,885 + -0.6
174,894 + +0.2
175,041 + +2.1
175,043 + +1.0
175,086 + HMPREF1058_RS07615 0.12 +0.5
175,089 + HMPREF1058_RS07615 0.12 -0.9
175,172 + HMPREF1058_RS07615 0.18 +3.1
175,189 + HMPREF1058_RS07615 0.20 -2.0
175,341 + HMPREF1058_RS07615 0.31 +4.0
175,670 + HMPREF1058_RS07615 0.56 +1.9
175,675 + HMPREF1058_RS07615 0.56 +1.2
175,675 + HMPREF1058_RS07615 0.56 -0.7
175,675 + HMPREF1058_RS07615 0.56 -0.1

Or see this region's nucleotide sequence