Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06065 and HMPREF1058_RS06060 are separated by 72 nucleotides HMPREF1058_RS06060 and HMPREF1058_RS06055 are separated by 5 nucleotides
HMPREF1058_RS06065: HMPREF1058_RS06065 - 3-deoxy-8-phosphooctulonate synthase, at 12,961 to 13,758
_RS06065
HMPREF1058_RS06060: HMPREF1058_RS06060 - YegS/Rv2252/BmrU family lipid kinase, at 13,831 to 14,760
_RS06060
HMPREF1058_RS06055: HMPREF1058_RS06055 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 14,766 to 15,689
_RS06055
Position (kb) 13
14
15 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 12.849 kb on + strand at 12.880 kb on + strand at 12.881 kb on - strand at 12.890 kb on + strand at 12.890 kb on + strand at 12.890 kb on + strand at 12.890 kb on + strand at 12.919 kb on + strand at 12.935 kb on - strand at 12.962 kb on + strand at 12.962 kb on + strand at 12.962 kb on + strand at 12.963 kb on - strand at 12.963 kb on - strand at 13.787 kb on - strand at 13.824 kb on - strand at 13.826 kb on - strand at 13.943 kb on - strand, within HMPREF1058_RS06060 at 13.988 kb on - strand, within HMPREF1058_RS06060 at 14.079 kb on - strand, within HMPREF1058_RS06060 at 14.092 kb on - strand, within HMPREF1058_RS06060 at 14.152 kb on - strand, within HMPREF1058_RS06060 at 14.179 kb on - strand, within HMPREF1058_RS06060 at 14.191 kb on - strand, within HMPREF1058_RS06060 at 14.240 kb on - strand, within HMPREF1058_RS06060 at 14.291 kb on - strand, within HMPREF1058_RS06060 at 14.301 kb on - strand, within HMPREF1058_RS06060 at 14.301 kb on - strand, within HMPREF1058_RS06060 at 14.303 kb on - strand, within HMPREF1058_RS06060 at 14.303 kb on - strand, within HMPREF1058_RS06060 at 14.392 kb on - strand, within HMPREF1058_RS06060 at 14.509 kb on - strand, within HMPREF1058_RS06060 at 14.529 kb on - strand, within HMPREF1058_RS06060 at 14.670 kb on - strand at 14.674 kb on - strand at 14.674 kb on - strand at 14.674 kb on - strand at 14.678 kb on - strand at 14.753 kb on - strand at 14.842 kb on - strand at 14.842 kb on - strand at 14.842 kb on - strand at 14.907 kb on - strand, within HMPREF1058_RS06055 at 14.911 kb on - strand, within HMPREF1058_RS06055 at 14.960 kb on - strand, within HMPREF1058_RS06055 at 14.962 kb on - strand, within HMPREF1058_RS06055 at 14.993 kb on - strand, within HMPREF1058_RS06055 at 14.993 kb on - strand, within HMPREF1058_RS06055 at 15.015 kb on - strand at 15.114 kb on - strand, within HMPREF1058_RS06055 at 15.118 kb on - strand, within HMPREF1058_RS06055 at 15.179 kb on - strand, within HMPREF1058_RS06055 at 15.179 kb on - strand, within HMPREF1058_RS06055 at 15.226 kb on - strand, within HMPREF1058_RS06055 at 15.226 kb on - strand, within HMPREF1058_RS06055 at 15.291 kb on - strand, within HMPREF1058_RS06055 at 15.342 kb on - strand, within HMPREF1058_RS06055 at 15.368 kb on - strand at 15.378 kb on - strand, within HMPREF1058_RS06055 at 15.393 kb on - strand, within HMPREF1058_RS06055 at 15.457 kb on - strand, within HMPREF1058_RS06055 at 15.468 kb on - strand, within HMPREF1058_RS06055 at 15.468 kb on - strand, within HMPREF1058_RS06055 at 15.505 kb on - strand, within HMPREF1058_RS06055 at 15.660 kb on - strand at 15.680 kb on - strand at 15.754 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 12,849 + -0.1 12,880 + +0.2 12,881 - -0.1 12,890 + -2.6 12,890 + +0.3 12,890 + -0.8 12,890 + -0.1 12,919 + -1.6 12,935 - +0.1 12,962 + -2.4 12,962 + -0.2 12,962 + +0.7 12,963 - +0.4 12,963 - -0.6 13,787 - -3.3 13,824 - -1.4 13,826 - +0.7 13,943 - HMPREF1058_RS06060 0.12 -4.5 13,988 - HMPREF1058_RS06060 0.17 -2.1 14,079 - HMPREF1058_RS06060 0.27 -4.1 14,092 - HMPREF1058_RS06060 0.28 -4.4 14,152 - HMPREF1058_RS06060 0.35 -1.4 14,179 - HMPREF1058_RS06060 0.37 -2.2 14,191 - HMPREF1058_RS06060 0.39 -4.8 14,240 - HMPREF1058_RS06060 0.44 -1.9 14,291 - HMPREF1058_RS06060 0.49 -2.5 14,301 - HMPREF1058_RS06060 0.51 -4.3 14,301 - HMPREF1058_RS06060 0.51 -4.1 14,303 - HMPREF1058_RS06060 0.51 -4.1 14,303 - HMPREF1058_RS06060 0.51 -4.0 14,392 - HMPREF1058_RS06060 0.60 -2.6 14,509 - HMPREF1058_RS06060 0.73 -3.8 14,529 - HMPREF1058_RS06060 0.75 -2.2 14,670 - -2.6 14,674 - -2.4 14,674 - -2.6 14,674 - -4.1 14,678 - -3.1 14,753 - -4.4 14,842 - +1.6 14,842 - +1.7 14,842 - +2.1 14,907 - HMPREF1058_RS06055 0.15 +1.1 14,911 - HMPREF1058_RS06055 0.16 +0.9 14,960 - HMPREF1058_RS06055 0.21 +0.2 14,962 - HMPREF1058_RS06055 0.21 +2.1 14,993 - HMPREF1058_RS06055 0.25 +1.5 14,993 - HMPREF1058_RS06055 0.25 +0.7 15,015 - -1.1 15,114 - HMPREF1058_RS06055 0.38 +0.6 15,118 - HMPREF1058_RS06055 0.38 +1.3 15,179 - HMPREF1058_RS06055 0.45 +1.7 15,179 - HMPREF1058_RS06055 0.45 +0.8 15,226 - HMPREF1058_RS06055 0.50 +0.4 15,226 - HMPREF1058_RS06055 0.50 +1.7 15,291 - HMPREF1058_RS06055 0.57 +1.2 15,342 - HMPREF1058_RS06055 0.62 +1.1 15,368 - -1.1 15,378 - HMPREF1058_RS06055 0.66 +0.9 15,393 - HMPREF1058_RS06055 0.68 +1.3 15,457 - HMPREF1058_RS06055 0.75 +0.3 15,468 - HMPREF1058_RS06055 0.76 -0.1 15,468 - HMPREF1058_RS06055 0.76 +0.3 15,505 - HMPREF1058_RS06055 0.80 +0.5 15,660 - -1.2 15,680 - +1.7 15,754 + -4.1
Or see this region's nucleotide sequence