Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03685 and HMPREF1058_RS03680 are separated by 822 nucleotides HMPREF1058_RS03680 and HMPREF1058_RS03675 are separated by 276 nucleotides HMPREF1058_RS03675 and HMPREF1058_RS03670 are separated by 94 nucleotides
HMPREF1058_RS03685: HMPREF1058_RS03685 - Fic family protein, at 215,729 to 217,018
_RS03685
HMPREF1058_RS03680: HMPREF1058_RS03680 - gamma-glutamyl-gamma-aminobutyrate hydrolase family protein, at 217,841 to 219,697
_RS03680
HMPREF1058_RS03675: HMPREF1058_RS03675 - hypothetical protein, at 219,974 to 220,411
_RS03675
HMPREF1058_RS03670: HMPREF1058_RS03670 - IS256 family transposase, at 220,506 to 221,738
_RS03670
Position (kb) 217
218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 217.002 kb on + strand at 217.002 kb on + strand at 217.003 kb on - strand at 217.016 kb on + strand at 217.049 kb on + strand at 217.070 kb on + strand at 217.130 kb on + strand at 217.162 kb on - strand at 217.175 kb on + strand at 217.175 kb on + strand at 217.176 kb on - strand at 217.178 kb on - strand at 217.180 kb on - strand at 217.182 kb on - strand at 217.182 kb on - strand at 217.194 kb on - strand at 217.222 kb on + strand at 217.247 kb on - strand at 217.248 kb on + strand at 217.248 kb on + strand at 217.249 kb on - strand at 217.250 kb on + strand at 217.252 kb on + strand at 217.252 kb on + strand at 217.253 kb on - strand at 217.253 kb on - strand at 217.255 kb on - strand at 217.255 kb on - strand at 217.265 kb on - strand at 217.328 kb on - strand at 217.330 kb on - strand at 217.330 kb on - strand at 217.330 kb on - strand at 217.330 kb on - strand at 217.331 kb on + strand at 217.331 kb on + strand at 217.334 kb on - strand at 217.345 kb on - strand at 217.358 kb on + strand at 217.359 kb on - strand at 217.479 kb on - strand at 217.750 kb on + strand at 217.750 kb on + strand at 217.751 kb on - strand at 217.762 kb on - strand at 217.807 kb on - strand at 217.833 kb on - strand at 217.835 kb on - strand at 217.840 kb on + strand at 217.840 kb on + strand at 217.861 kb on - strand at 218.015 kb on - strand at 218.016 kb on + strand at 218.016 kb on + strand at 218.016 kb on + strand at 218.048 kb on + strand, within HMPREF1058_RS03680 at 218.048 kb on + strand, within HMPREF1058_RS03680 at 218.049 kb on - strand, within HMPREF1058_RS03680 at 218.049 kb on - strand, within HMPREF1058_RS03680 at 218.049 kb on - strand, within HMPREF1058_RS03680 at 218.052 kb on + strand, within HMPREF1058_RS03680 at 218.156 kb on - strand, within HMPREF1058_RS03680 at 218.183 kb on + strand, within HMPREF1058_RS03680 at 218.183 kb on + strand, within HMPREF1058_RS03680 at 218.308 kb on - strand, within HMPREF1058_RS03680 at 218.340 kb on + strand, within HMPREF1058_RS03680 at 218.340 kb on + strand, within HMPREF1058_RS03680 at 218.340 kb on + strand, within HMPREF1058_RS03680 at 218.431 kb on - strand, within HMPREF1058_RS03680 at 218.455 kb on + strand, within HMPREF1058_RS03680 at 218.552 kb on - strand, within HMPREF1058_RS03680 at 218.592 kb on + strand, within HMPREF1058_RS03680 at 218.592 kb on + strand, within HMPREF1058_RS03680 at 218.616 kb on + strand, within HMPREF1058_RS03680 at 218.616 kb on + strand, within HMPREF1058_RS03680 at 218.647 kb on + strand, within HMPREF1058_RS03680 at 218.647 kb on + strand, within HMPREF1058_RS03680 at 218.691 kb on + strand, within HMPREF1058_RS03680 at 218.691 kb on + strand, within HMPREF1058_RS03680 at 218.692 kb on - strand, within HMPREF1058_RS03680 at 218.692 kb on - strand, within HMPREF1058_RS03680 at 218.852 kb on - strand, within HMPREF1058_RS03680 at 218.945 kb on + strand, within HMPREF1058_RS03680 at 219.101 kb on - strand, within HMPREF1058_RS03680 at 219.101 kb on - strand, within HMPREF1058_RS03680 at 219.131 kb on - strand, within HMPREF1058_RS03680 at 219.216 kb on + strand, within HMPREF1058_RS03680 at 219.223 kb on + strand, within HMPREF1058_RS03680 at 219.223 kb on + strand, within HMPREF1058_RS03680 at 219.228 kb on + strand, within HMPREF1058_RS03680 at 219.229 kb on - strand, within HMPREF1058_RS03680 at 219.235 kb on - strand, within HMPREF1058_RS03680 at 219.281 kb on - strand, within HMPREF1058_RS03680 at 219.281 kb on - strand, within HMPREF1058_RS03680 at 219.289 kb on + strand, within HMPREF1058_RS03680 at 219.289 kb on + strand, within HMPREF1058_RS03680 at 219.410 kb on + strand, within HMPREF1058_RS03680 at 219.411 kb on - strand, within HMPREF1058_RS03680 at 219.411 kb on - strand, within HMPREF1058_RS03680 at 219.475 kb on + strand, within HMPREF1058_RS03680 at 219.504 kb on + strand, within HMPREF1058_RS03680 at 219.505 kb on - strand, within HMPREF1058_RS03680 at 219.509 kb on - strand, within HMPREF1058_RS03680 at 219.645 kb on + strand at 219.657 kb on + strand at 219.727 kb on - strand at 219.799 kb on + strand at 219.812 kb on + strand at 219.821 kb on + strand at 219.821 kb on + strand at 219.868 kb on - strand at 219.895 kb on + strand at 219.945 kb on - strand at 220.009 kb on - strand at 220.024 kb on - strand, within HMPREF1058_RS03675 at 220.050 kb on + strand, within HMPREF1058_RS03675 at 220.057 kb on - strand, within HMPREF1058_RS03675 at 220.057 kb on - strand, within HMPREF1058_RS03675 at 220.094 kb on + strand, within HMPREF1058_RS03675 at 220.160 kb on + strand, within HMPREF1058_RS03675 at 220.163 kb on + strand, within HMPREF1058_RS03675 at 220.218 kb on + strand, within HMPREF1058_RS03675 at 220.218 kb on + strand, within HMPREF1058_RS03675 at 220.219 kb on - strand, within HMPREF1058_RS03675 at 220.253 kb on + strand, within HMPREF1058_RS03675 at 220.301 kb on - strand, within HMPREF1058_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 217,002 + -1.2 217,002 + +0.9 217,003 - -0.2 217,016 + -1.1 217,049 + +0.8 217,070 + -0.5 217,130 + +0.2 217,162 - +1.1 217,175 + -1.3 217,175 + -1.2 217,176 - -1.9 217,178 - +0.1 217,180 - +0.7 217,182 - +0.6 217,182 - -0.8 217,194 - -0.8 217,222 + +0.6 217,247 - +0.6 217,248 + -0.3 217,248 + -0.1 217,249 - +0.2 217,250 + +0.1 217,252 + -0.1 217,252 + +0.4 217,253 - +1.7 217,253 - +0.6 217,255 - +1.9 217,255 - +0.7 217,265 - -0.3 217,328 - +0.4 217,330 - +1.3 217,330 - -2.2 217,330 - +0.5 217,330 - +0.8 217,331 + +0.4 217,331 + -0.2 217,334 - +0.2 217,345 - -0.2 217,358 + +0.4 217,359 - +1.6 217,479 - -0.6 217,750 + +0.3 217,750 + +1.2 217,751 - +0.7 217,762 - -1.8 217,807 - +0.2 217,833 - -0.8 217,835 - -0.1 217,840 + +1.0 217,840 + -0.6 217,861 - +0.3 218,015 - +0.2 218,016 + -2.7 218,016 + +0.3 218,016 + -1.1 218,048 + HMPREF1058_RS03680 0.11 +1.1 218,048 + HMPREF1058_RS03680 0.11 +0.9 218,049 - HMPREF1058_RS03680 0.11 +0.9 218,049 - HMPREF1058_RS03680 0.11 +0.5 218,049 - HMPREF1058_RS03680 0.11 -2.3 218,052 + HMPREF1058_RS03680 0.11 -2.9 218,156 - HMPREF1058_RS03680 0.17 +1.8 218,183 + HMPREF1058_RS03680 0.18 +1.4 218,183 + HMPREF1058_RS03680 0.18 +0.5 218,308 - HMPREF1058_RS03680 0.25 -1.1 218,340 + HMPREF1058_RS03680 0.27 +1.0 218,340 + HMPREF1058_RS03680 0.27 -0.2 218,340 + HMPREF1058_RS03680 0.27 +1.1 218,431 - HMPREF1058_RS03680 0.32 +1.0 218,455 + HMPREF1058_RS03680 0.33 -0.7 218,552 - HMPREF1058_RS03680 0.38 +1.3 218,592 + HMPREF1058_RS03680 0.40 +0.2 218,592 + HMPREF1058_RS03680 0.40 +0.9 218,616 + HMPREF1058_RS03680 0.42 +0.5 218,616 + HMPREF1058_RS03680 0.42 +0.7 218,647 + HMPREF1058_RS03680 0.43 -1.6 218,647 + HMPREF1058_RS03680 0.43 +1.6 218,691 + HMPREF1058_RS03680 0.46 -0.6 218,691 + HMPREF1058_RS03680 0.46 -0.1 218,692 - HMPREF1058_RS03680 0.46 +0.9 218,692 - HMPREF1058_RS03680 0.46 +0.8 218,852 - HMPREF1058_RS03680 0.54 +1.2 218,945 + HMPREF1058_RS03680 0.59 +0.5 219,101 - HMPREF1058_RS03680 0.68 -1.6 219,101 - HMPREF1058_RS03680 0.68 +0.8 219,131 - HMPREF1058_RS03680 0.69 +1.0 219,216 + HMPREF1058_RS03680 0.74 -3.7 219,223 + HMPREF1058_RS03680 0.74 +1.4 219,223 + HMPREF1058_RS03680 0.74 +0.9 219,228 + HMPREF1058_RS03680 0.75 +0.3 219,229 - HMPREF1058_RS03680 0.75 +1.5 219,235 - HMPREF1058_RS03680 0.75 -1.6 219,281 - HMPREF1058_RS03680 0.78 -0.6 219,281 - HMPREF1058_RS03680 0.78 +1.6 219,289 + HMPREF1058_RS03680 0.78 +1.6 219,289 + HMPREF1058_RS03680 0.78 +0.3 219,410 + HMPREF1058_RS03680 0.84 -3.1 219,411 - HMPREF1058_RS03680 0.85 +2.8 219,411 - HMPREF1058_RS03680 0.85 +0.5 219,475 + HMPREF1058_RS03680 0.88 -0.1 219,504 + HMPREF1058_RS03680 0.90 -0.3 219,505 - HMPREF1058_RS03680 0.90 +0.7 219,509 - HMPREF1058_RS03680 0.90 +0.9 219,645 + +0.9 219,657 + -0.8 219,727 - -0.1 219,799 + +1.2 219,812 + -1.8 219,821 + -0.3 219,821 + -0.6 219,868 - +0.8 219,895 + +1.6 219,945 - +0.5 220,009 - -0.4 220,024 - HMPREF1058_RS03675 0.11 +0.2 220,050 + HMPREF1058_RS03675 0.17 -1.6 220,057 - HMPREF1058_RS03675 0.19 +0.2 220,057 - HMPREF1058_RS03675 0.19 -1.1 220,094 + HMPREF1058_RS03675 0.27 +0.4 220,160 + HMPREF1058_RS03675 0.42 +0.1 220,163 + HMPREF1058_RS03675 0.43 +1.5 220,218 + HMPREF1058_RS03675 0.56 +1.2 220,218 + HMPREF1058_RS03675 0.56 -0.4 220,219 - HMPREF1058_RS03675 0.56 +0.6 220,253 + HMPREF1058_RS03675 0.64 +0.8 220,301 - HMPREF1058_RS03675 0.75 -0.0
Or see this region's nucleotide sequence