Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03665

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03670 and HMPREF1058_RS03665 are separated by 112 nucleotidesHMPREF1058_RS03665 and HMPREF1058_RS03660 are separated by 14 nucleotides HMPREF1058_RS03670: HMPREF1058_RS03670 - IS256 family transposase, at 220,506 to 221,738 _RS03670 HMPREF1058_RS03665: HMPREF1058_RS03665 - ABC transporter permease, at 221,851 to 224,175 _RS03665 HMPREF1058_RS03660: HMPREF1058_RS03660 - ABC transporter permease, at 224,190 to 226,502 _RS03660 Position (kb) 221 222 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 221.821 kb on + strandat 221.822 kb on - strandat 221.848 kb on - strandat 221.862 kb on + strandat 221.926 kb on - strandat 222.055 kb on - strandat 222.064 kb on + strandat 222.064 kb on + strandat 222.064 kb on + strandat 222.065 kb on - strandat 222.130 kb on + strandat 222.164 kb on - strand, within HMPREF1058_RS03665at 222.193 kb on - strand, within HMPREF1058_RS03665at 222.242 kb on - strand, within HMPREF1058_RS03665at 222.267 kb on + strand, within HMPREF1058_RS03665at 222.267 kb on + strand, within HMPREF1058_RS03665at 222.280 kb on - strand, within HMPREF1058_RS03665at 222.280 kb on - strand, within HMPREF1058_RS03665at 222.350 kb on + strand, within HMPREF1058_RS03665at 222.463 kb on + strand, within HMPREF1058_RS03665at 222.463 kb on + strand, within HMPREF1058_RS03665at 222.463 kb on + strand, within HMPREF1058_RS03665at 222.463 kb on + strand, within HMPREF1058_RS03665at 222.463 kb on + strand, within HMPREF1058_RS03665at 222.464 kb on - strand, within HMPREF1058_RS03665at 222.464 kb on - strandat 222.464 kb on - strand, within HMPREF1058_RS03665at 222.464 kb on - strand, within HMPREF1058_RS03665at 222.466 kb on + strand, within HMPREF1058_RS03665at 222.467 kb on - strand, within HMPREF1058_RS03665at 222.467 kb on - strand, within HMPREF1058_RS03665at 222.586 kb on + strand, within HMPREF1058_RS03665at 222.587 kb on - strand, within HMPREF1058_RS03665at 222.630 kb on - strand, within HMPREF1058_RS03665at 222.630 kb on - strand, within HMPREF1058_RS03665at 222.637 kb on - strand, within HMPREF1058_RS03665at 222.649 kb on + strand, within HMPREF1058_RS03665at 222.650 kb on - strand, within HMPREF1058_RS03665at 222.650 kb on - strand, within HMPREF1058_RS03665at 222.650 kb on - strand, within HMPREF1058_RS03665at 222.651 kb on + strand, within HMPREF1058_RS03665at 222.652 kb on - strand, within HMPREF1058_RS03665at 222.700 kb on + strand, within HMPREF1058_RS03665at 222.700 kb on + strand, within HMPREF1058_RS03665at 222.736 kb on - strand, within HMPREF1058_RS03665at 222.762 kb on + strand, within HMPREF1058_RS03665at 222.852 kb on - strand, within HMPREF1058_RS03665at 222.871 kb on + strand, within HMPREF1058_RS03665at 222.907 kb on + strand, within HMPREF1058_RS03665at 222.949 kb on - strand, within HMPREF1058_RS03665at 222.961 kb on + strand, within HMPREF1058_RS03665at 222.978 kb on + strand, within HMPREF1058_RS03665at 223.103 kb on - strand, within HMPREF1058_RS03665at 223.129 kb on - strand, within HMPREF1058_RS03665at 223.186 kb on - strand, within HMPREF1058_RS03665at 223.265 kb on - strand, within HMPREF1058_RS03665at 223.265 kb on - strand, within HMPREF1058_RS03665at 223.269 kb on + strand, within HMPREF1058_RS03665at 223.275 kb on + strand, within HMPREF1058_RS03665at 223.275 kb on + strand, within HMPREF1058_RS03665at 223.275 kb on + strand, within HMPREF1058_RS03665at 223.276 kb on - strand, within HMPREF1058_RS03665at 223.277 kb on + strand, within HMPREF1058_RS03665at 223.284 kb on + strand, within HMPREF1058_RS03665at 223.326 kb on + strand, within HMPREF1058_RS03665at 223.330 kb on + strand, within HMPREF1058_RS03665at 223.552 kb on - strand, within HMPREF1058_RS03665at 223.555 kb on + strand, within HMPREF1058_RS03665at 223.556 kb on - strand, within HMPREF1058_RS03665at 223.556 kb on - strand, within HMPREF1058_RS03665at 223.579 kb on - strand, within HMPREF1058_RS03665at 223.657 kb on - strand, within HMPREF1058_RS03665at 223.657 kb on - strand, within HMPREF1058_RS03665at 223.660 kb on + strand, within HMPREF1058_RS03665at 223.856 kb on + strand, within HMPREF1058_RS03665at 223.873 kb on - strand, within HMPREF1058_RS03665at 223.897 kb on - strand, within HMPREF1058_RS03665at 223.943 kb on + strandat 223.944 kb on - strandat 223.944 kb on - strandat 223.991 kb on + strandat 223.994 kb on + strandat 224.125 kb on - strandat 224.144 kb on - strandat 224.152 kb on + strandat 224.159 kb on + strandat 224.162 kb on + strandat 224.164 kb on + strandat 224.165 kb on - strandat 224.184 kb on - strandat 224.188 kb on - strandat 224.188 kb on - strandat 224.312 kb on + strandat 224.313 kb on - strandat 224.313 kb on - strandat 224.313 kb on - strandat 224.367 kb on + strandat 224.401 kb on + strandat 224.402 kb on - strandat 224.402 kb on - strandat 224.403 kb on + strandat 224.403 kb on + strandat 224.404 kb on - strandat 224.404 kb on - strandat 224.407 kb on - strandat 224.407 kb on - strandat 224.407 kb on - strandat 224.408 kb on + strandat 224.469 kb on + strand, within HMPREF1058_RS03660at 224.609 kb on + strand, within HMPREF1058_RS03660at 224.659 kb on + strand, within HMPREF1058_RS03660at 224.689 kb on + strand, within HMPREF1058_RS03660at 224.700 kb on + strand, within HMPREF1058_RS03660at 224.735 kb on + strand, within HMPREF1058_RS03660at 224.735 kb on + strand, within HMPREF1058_RS03660at 224.738 kb on - strand, within HMPREF1058_RS03660at 224.778 kb on - strand, within HMPREF1058_RS03660at 224.895 kb on + strand, within HMPREF1058_RS03660at 224.896 kb on - strand, within HMPREF1058_RS03660at 224.896 kb on - strand, within HMPREF1058_RS03660at 224.934 kb on - strand, within HMPREF1058_RS03660at 224.934 kb on - strand, within HMPREF1058_RS03660at 224.976 kb on - strand, within HMPREF1058_RS03660at 224.976 kb on - strand, within HMPREF1058_RS03660at 224.977 kb on + strand, within HMPREF1058_RS03660at 225.008 kb on + strandat 225.053 kb on + strand, within HMPREF1058_RS03660

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
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221,821 + +0.1
221,822 - +1.5
221,848 - +0.5
221,862 + +1.8
221,926 - +1.5
222,055 - +2.1
222,064 + +0.3
222,064 + -0.2
222,064 + -0.4
222,065 - -0.5
222,130 + -1.1
222,164 - HMPREF1058_RS03665 0.13 -1.6
222,193 - HMPREF1058_RS03665 0.15 -2.9
222,242 - HMPREF1058_RS03665 0.17 +0.7
222,267 + HMPREF1058_RS03665 0.18 +0.0
222,267 + HMPREF1058_RS03665 0.18 -1.1
222,280 - HMPREF1058_RS03665 0.18 +0.6
222,280 - HMPREF1058_RS03665 0.18 +2.5
222,350 + HMPREF1058_RS03665 0.21 -0.0
222,463 + HMPREF1058_RS03665 0.26 -1.1
222,463 + HMPREF1058_RS03665 0.26 +0.4
222,463 + HMPREF1058_RS03665 0.26 -0.9
222,463 + HMPREF1058_RS03665 0.26 -0.9
222,463 + HMPREF1058_RS03665 0.26 +1.6
222,464 - HMPREF1058_RS03665 0.26 -0.8
222,464 - -0.4
222,464 - HMPREF1058_RS03665 0.26 +0.3
222,464 - HMPREF1058_RS03665 0.26 -1.1
222,466 + HMPREF1058_RS03665 0.26 +1.0
222,467 - HMPREF1058_RS03665 0.26 +0.9
222,467 - HMPREF1058_RS03665 0.26 +0.9
222,586 + HMPREF1058_RS03665 0.32 +0.9
222,587 - HMPREF1058_RS03665 0.32 -1.5
222,630 - HMPREF1058_RS03665 0.34 +0.3
222,630 - HMPREF1058_RS03665 0.34 +0.4
222,637 - HMPREF1058_RS03665 0.34 +0.8
222,649 + HMPREF1058_RS03665 0.34 +0.7
222,650 - HMPREF1058_RS03665 0.34 +1.9
222,650 - HMPREF1058_RS03665 0.34 +2.0
222,650 - HMPREF1058_RS03665 0.34 -0.1
222,651 + HMPREF1058_RS03665 0.34 +4.6
222,652 - HMPREF1058_RS03665 0.34 -2.0
222,700 + HMPREF1058_RS03665 0.37 -0.4
222,700 + HMPREF1058_RS03665 0.37 -1.1
222,736 - HMPREF1058_RS03665 0.38 -2.5
222,762 + HMPREF1058_RS03665 0.39 -0.2
222,852 - HMPREF1058_RS03665 0.43 +0.4
222,871 + HMPREF1058_RS03665 0.44 +0.6
222,907 + HMPREF1058_RS03665 0.45 +0.7
222,949 - HMPREF1058_RS03665 0.47 -0.3
222,961 + HMPREF1058_RS03665 0.48 +0.9
222,978 + HMPREF1058_RS03665 0.48 -1.8
223,103 - HMPREF1058_RS03665 0.54 +0.1
223,129 - HMPREF1058_RS03665 0.55 +0.5
223,186 - HMPREF1058_RS03665 0.57 +1.6
223,265 - HMPREF1058_RS03665 0.61 -0.3
223,265 - HMPREF1058_RS03665 0.61 -1.1
223,269 + HMPREF1058_RS03665 0.61 +0.5
223,275 + HMPREF1058_RS03665 0.61 +0.7
223,275 + HMPREF1058_RS03665 0.61 -0.3
223,275 + HMPREF1058_RS03665 0.61 +0.0
223,276 - HMPREF1058_RS03665 0.61 -0.0
223,277 + HMPREF1058_RS03665 0.61 +0.6
223,284 + HMPREF1058_RS03665 0.62 +0.0
223,326 + HMPREF1058_RS03665 0.63 +0.3
223,330 + HMPREF1058_RS03665 0.64 +1.2
223,552 - HMPREF1058_RS03665 0.73 +1.4
223,555 + HMPREF1058_RS03665 0.73 -1.3
223,556 - HMPREF1058_RS03665 0.73 +0.2
223,556 - HMPREF1058_RS03665 0.73 +1.2
223,579 - HMPREF1058_RS03665 0.74 -2.6
223,657 - HMPREF1058_RS03665 0.78 +0.2
223,657 - HMPREF1058_RS03665 0.78 +0.4
223,660 + HMPREF1058_RS03665 0.78 +1.6
223,856 + HMPREF1058_RS03665 0.86 +0.1
223,873 - HMPREF1058_RS03665 0.87 +2.1
223,897 - HMPREF1058_RS03665 0.88 +0.5
223,943 + +2.6
223,944 - +1.2
223,944 - -1.1
223,991 + -1.2
223,994 + -2.6
224,125 - +1.6
224,144 - +3.6
224,152 + -1.1
224,159 + +0.8
224,162 + -1.7
224,164 + -0.6
224,165 - +1.8
224,184 - +3.0
224,188 - -1.6
224,188 - +0.7
224,312 + +1.5
224,313 - +1.1
224,313 - -0.0
224,313 - +0.2
224,367 + -1.0
224,401 + -1.6
224,402 - -0.1
224,402 - -1.8
224,403 + -2.9
224,403 + -2.6
224,404 - -1.1
224,404 - +0.5
224,407 - +1.0
224,407 - -0.8
224,407 - -1.2
224,408 + -2.1
224,469 + HMPREF1058_RS03660 0.12 +0.7
224,609 + HMPREF1058_RS03660 0.18 +0.2
224,659 + HMPREF1058_RS03660 0.20 -1.6
224,689 + HMPREF1058_RS03660 0.22 -0.1
224,700 + HMPREF1058_RS03660 0.22 +1.5
224,735 + HMPREF1058_RS03660 0.24 -0.5
224,735 + HMPREF1058_RS03660 0.24 -0.6
224,738 - HMPREF1058_RS03660 0.24 -2.1
224,778 - HMPREF1058_RS03660 0.25 +0.4
224,895 + HMPREF1058_RS03660 0.30 -0.3
224,896 - HMPREF1058_RS03660 0.31 +1.6
224,896 - HMPREF1058_RS03660 0.31 +0.6
224,934 - HMPREF1058_RS03660 0.32 -0.5
224,934 - HMPREF1058_RS03660 0.32 +0.0
224,976 - HMPREF1058_RS03660 0.34 +1.6
224,976 - HMPREF1058_RS03660 0.34 -0.6
224,977 + HMPREF1058_RS03660 0.34 -0.3
225,008 + +1.2
225,053 + HMPREF1058_RS03660 0.37 +0.8

Or see this region's nucleotide sequence