Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02670 and HMPREF1058_RS02665 are separated by 1 nucleotides HMPREF1058_RS02665 and HMPREF1058_RS02660 overlap by 4 nucleotides HMPREF1058_RS02660 and HMPREF1058_RS02655 are separated by 21 nucleotides HMPREF1058_RS02655 and HMPREF1058_RS02650 are separated by 9 nucleotides
HMPREF1058_RS02670: HMPREF1058_RS02670 - Bro-N domain-containing protein, at 130,756 to 131,616
_RS02670
HMPREF1058_RS02665: HMPREF1058_RS02665 - type I-C CRISPR-associated protein Cas5, at 131,618 to 132,298
_RS02665
HMPREF1058_RS02660: HMPREF1058_RS02660 - type I-C CRISPR-associated protein Cas8c/Csd1, at 132,295 to 134,016
_RS02660
HMPREF1058_RS02655: HMPREF1058_RS02655 - type I-C CRISPR-associated protein Cas7/Csd2, at 134,038 to 134,889
_RS02655
HMPREF1058_RS02650: HMPREF1058_RS02650 - CRISPR-associated protein Cas4, at 134,899 to 135,564
_RS02650
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 131.321 kb on - strand, within HMPREF1058_RS02670 at 131.365 kb on - strand, within HMPREF1058_RS02670 at 131.388 kb on + strand, within HMPREF1058_RS02670 at 131.418 kb on + strand, within HMPREF1058_RS02670 at 131.419 kb on - strand, within HMPREF1058_RS02670 at 131.425 kb on - strand, within HMPREF1058_RS02670 at 131.457 kb on + strand, within HMPREF1058_RS02670 at 131.538 kb on - strand at 131.639 kb on + strand at 131.695 kb on - strand, within HMPREF1058_RS02665 at 131.815 kb on + strand, within HMPREF1058_RS02665 at 131.869 kb on + strand, within HMPREF1058_RS02665 at 131.884 kb on + strand, within HMPREF1058_RS02665 at 131.885 kb on - strand, within HMPREF1058_RS02665 at 131.885 kb on - strand, within HMPREF1058_RS02665 at 131.936 kb on + strand, within HMPREF1058_RS02665 at 132.020 kb on - strand, within HMPREF1058_RS02665 at 132.027 kb on - strand, within HMPREF1058_RS02665 at 132.175 kb on + strand, within HMPREF1058_RS02665 at 132.233 kb on - strand at 132.312 kb on - strand at 132.319 kb on + strand at 132.320 kb on - strand at 132.397 kb on - strand at 132.435 kb on - strand at 132.439 kb on - strand at 132.522 kb on + strand, within HMPREF1058_RS02660 at 132.526 kb on + strand, within HMPREF1058_RS02660 at 132.531 kb on - strand, within HMPREF1058_RS02660 at 132.566 kb on + strand, within HMPREF1058_RS02660 at 132.567 kb on - strand, within HMPREF1058_RS02660 at 132.570 kb on + strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.584 kb on + strand, within HMPREF1058_RS02660 at 132.585 kb on - strand, within HMPREF1058_RS02660 at 132.607 kb on - strand, within HMPREF1058_RS02660 at 132.609 kb on - strand, within HMPREF1058_RS02660 at 132.611 kb on - strand, within HMPREF1058_RS02660 at 132.685 kb on - strand, within HMPREF1058_RS02660 at 132.717 kb on + strand, within HMPREF1058_RS02660 at 132.718 kb on - strand, within HMPREF1058_RS02660 at 132.718 kb on - strand, within HMPREF1058_RS02660 at 132.764 kb on + strand, within HMPREF1058_RS02660 at 132.765 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.976 kb on - strand, within HMPREF1058_RS02660 at 132.982 kb on + strand, within HMPREF1058_RS02660 at 132.983 kb on - strand, within HMPREF1058_RS02660 at 133.019 kb on - strand, within HMPREF1058_RS02660 at 133.020 kb on + strand, within HMPREF1058_RS02660 at 133.021 kb on - strand, within HMPREF1058_RS02660 at 133.088 kb on - strand, within HMPREF1058_RS02660 at 133.142 kb on + strand, within HMPREF1058_RS02660 at 133.205 kb on + strand, within HMPREF1058_RS02660 at 133.206 kb on - strand, within HMPREF1058_RS02660 at 133.208 kb on - strand, within HMPREF1058_RS02660 at 133.228 kb on + strand, within HMPREF1058_RS02660 at 133.228 kb on + strand, within HMPREF1058_RS02660 at 133.229 kb on - strand at 133.307 kb on + strand, within HMPREF1058_RS02660 at 133.310 kb on + strand, within HMPREF1058_RS02660 at 133.310 kb on + strand, within HMPREF1058_RS02660 at 133.310 kb on + strand, within HMPREF1058_RS02660 at 133.311 kb on - strand, within HMPREF1058_RS02660 at 133.352 kb on + strand, within HMPREF1058_RS02660 at 133.409 kb on - strand, within HMPREF1058_RS02660 at 133.500 kb on + strand, within HMPREF1058_RS02660 at 133.501 kb on - strand, within HMPREF1058_RS02660 at 133.502 kb on + strand, within HMPREF1058_RS02660 at 133.502 kb on + strand, within HMPREF1058_RS02660 at 133.581 kb on - strand, within HMPREF1058_RS02660 at 133.581 kb on - strand, within HMPREF1058_RS02660 at 133.607 kb on - strand, within HMPREF1058_RS02660 at 133.684 kb on + strand, within HMPREF1058_RS02660 at 133.740 kb on + strand, within HMPREF1058_RS02660 at 133.764 kb on + strand, within HMPREF1058_RS02660 at 133.832 kb on + strand, within HMPREF1058_RS02660 at 133.864 kb on + strand at 133.888 kb on - strand at 133.927 kb on - strand at 134.024 kb on - strand at 134.038 kb on - strand at 134.127 kb on - strand, within HMPREF1058_RS02655 at 134.127 kb on - strand, within HMPREF1058_RS02655 at 134.201 kb on + strand, within HMPREF1058_RS02655 at 134.238 kb on - strand, within HMPREF1058_RS02655 at 134.244 kb on - strand, within HMPREF1058_RS02655 at 134.394 kb on + strand, within HMPREF1058_RS02655 at 134.445 kb on + strand, within HMPREF1058_RS02655 at 134.447 kb on + strand, within HMPREF1058_RS02655 at 134.447 kb on + strand, within HMPREF1058_RS02655 at 134.448 kb on - strand, within HMPREF1058_RS02655 at 134.448 kb on - strand, within HMPREF1058_RS02655 at 134.475 kb on + strand, within HMPREF1058_RS02655 at 134.476 kb on - strand, within HMPREF1058_RS02655 at 134.493 kb on - strand, within HMPREF1058_RS02655 at 134.535 kb on + strand, within HMPREF1058_RS02655 at 134.536 kb on - strand, within HMPREF1058_RS02655 at 134.564 kb on - strand, within HMPREF1058_RS02655 at 134.572 kb on + strand, within HMPREF1058_RS02655 at 134.573 kb on - strand, within HMPREF1058_RS02655 at 134.598 kb on + strand, within HMPREF1058_RS02655 at 134.835 kb on + strand at 134.835 kb on + strand at 134.840 kb on + strand at 134.840 kb on + strand at 134.840 kb on + strand at 134.841 kb on - strand at 134.845 kb on - strand at 134.887 kb on + strand at 134.898 kb on + strand at 134.902 kb on + strand at 134.903 kb on - strand at 134.922 kb on + strand at 134.923 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 131,321 - HMPREF1058_RS02670 0.66 -0.1 131,365 - HMPREF1058_RS02670 0.71 +0.8 131,388 + HMPREF1058_RS02670 0.73 +0.3 131,418 + HMPREF1058_RS02670 0.77 +0.7 131,419 - HMPREF1058_RS02670 0.77 -1.5 131,425 - HMPREF1058_RS02670 0.78 +0.9 131,457 + HMPREF1058_RS02670 0.81 -1.9 131,538 - -0.7 131,639 + -0.1 131,695 - HMPREF1058_RS02665 0.11 -0.2 131,815 + HMPREF1058_RS02665 0.29 +0.2 131,869 + HMPREF1058_RS02665 0.37 +0.9 131,884 + HMPREF1058_RS02665 0.39 -2.7 131,885 - HMPREF1058_RS02665 0.39 -1.2 131,885 - HMPREF1058_RS02665 0.39 +0.5 131,936 + HMPREF1058_RS02665 0.47 +0.7 132,020 - HMPREF1058_RS02665 0.59 -3.1 132,027 - HMPREF1058_RS02665 0.60 +1.7 132,175 + HMPREF1058_RS02665 0.82 +0.1 132,233 - +1.3 132,312 - +1.1 132,319 + -0.6 132,320 - -1.9 132,397 - +2.0 132,435 - -0.6 132,439 - -2.6 132,522 + HMPREF1058_RS02660 0.13 -0.3 132,526 + HMPREF1058_RS02660 0.13 +0.1 132,531 - HMPREF1058_RS02660 0.14 -0.6 132,566 + HMPREF1058_RS02660 0.16 -0.3 132,567 - HMPREF1058_RS02660 0.16 -1.9 132,570 + HMPREF1058_RS02660 0.16 -1.1 132,571 - HMPREF1058_RS02660 0.16 +1.4 132,571 - HMPREF1058_RS02660 0.16 -0.3 132,571 - HMPREF1058_RS02660 0.16 +0.3 132,584 + HMPREF1058_RS02660 0.17 +3.2 132,585 - HMPREF1058_RS02660 0.17 +1.3 132,607 - HMPREF1058_RS02660 0.18 -2.7 132,609 - HMPREF1058_RS02660 0.18 -1.6 132,611 - HMPREF1058_RS02660 0.18 +1.0 132,685 - HMPREF1058_RS02660 0.23 -1.4 132,717 + HMPREF1058_RS02660 0.25 +0.3 132,718 - HMPREF1058_RS02660 0.25 -0.1 132,718 - HMPREF1058_RS02660 0.25 -1.5 132,764 + HMPREF1058_RS02660 0.27 -1.1 132,765 - HMPREF1058_RS02660 0.27 +0.2 132,903 - HMPREF1058_RS02660 0.35 -1.1 132,903 - HMPREF1058_RS02660 0.35 -1.6 132,903 - HMPREF1058_RS02660 0.35 -1.1 132,976 - HMPREF1058_RS02660 0.40 +0.8 132,982 + HMPREF1058_RS02660 0.40 -0.3 132,983 - HMPREF1058_RS02660 0.40 +1.6 133,019 - HMPREF1058_RS02660 0.42 +0.9 133,020 + HMPREF1058_RS02660 0.42 -1.6 133,021 - HMPREF1058_RS02660 0.42 +0.7 133,088 - HMPREF1058_RS02660 0.46 +0.9 133,142 + HMPREF1058_RS02660 0.49 -2.6 133,205 + HMPREF1058_RS02660 0.53 -2.6 133,206 - HMPREF1058_RS02660 0.53 -1.1 133,208 - HMPREF1058_RS02660 0.53 -1.6 133,228 + HMPREF1058_RS02660 0.54 -2.8 133,228 + HMPREF1058_RS02660 0.54 -1.3 133,229 - +0.5 133,307 + HMPREF1058_RS02660 0.59 -3.3 133,310 + HMPREF1058_RS02660 0.59 -0.7 133,310 + HMPREF1058_RS02660 0.59 -0.9 133,310 + HMPREF1058_RS02660 0.59 -4.1 133,311 - HMPREF1058_RS02660 0.59 +1.2 133,352 + HMPREF1058_RS02660 0.61 -3.8 133,409 - HMPREF1058_RS02660 0.65 -3.4 133,500 + HMPREF1058_RS02660 0.70 -0.3 133,501 - HMPREF1058_RS02660 0.70 -2.0 133,502 + HMPREF1058_RS02660 0.70 -3.9 133,502 + HMPREF1058_RS02660 0.70 -2.7 133,581 - HMPREF1058_RS02660 0.75 -1.3 133,581 - HMPREF1058_RS02660 0.75 +0.4 133,607 - HMPREF1058_RS02660 0.76 +0.0 133,684 + HMPREF1058_RS02660 0.81 -3.1 133,740 + HMPREF1058_RS02660 0.84 -3.9 133,764 + HMPREF1058_RS02660 0.85 -2.7 133,832 + HMPREF1058_RS02660 0.89 +0.6 133,864 + -2.9 133,888 - -1.1 133,927 - -0.8 134,024 - +0.2 134,038 - -1.1 134,127 - HMPREF1058_RS02655 0.10 +0.9 134,127 - HMPREF1058_RS02655 0.10 +0.1 134,201 + HMPREF1058_RS02655 0.19 +0.5 134,238 - HMPREF1058_RS02655 0.23 +2.7 134,244 - HMPREF1058_RS02655 0.24 +0.0 134,394 + HMPREF1058_RS02655 0.42 +1.5 134,445 + HMPREF1058_RS02655 0.48 -1.3 134,447 + HMPREF1058_RS02655 0.48 -0.7 134,447 + HMPREF1058_RS02655 0.48 -0.2 134,448 - HMPREF1058_RS02655 0.48 +0.8 134,448 - HMPREF1058_RS02655 0.48 -1.4 134,475 + HMPREF1058_RS02655 0.51 -1.4 134,476 - HMPREF1058_RS02655 0.51 -1.1 134,493 - HMPREF1058_RS02655 0.53 +0.7 134,535 + HMPREF1058_RS02655 0.58 +1.2 134,536 - HMPREF1058_RS02655 0.58 +0.9 134,564 - HMPREF1058_RS02655 0.62 +0.2 134,572 + HMPREF1058_RS02655 0.63 +2.0 134,573 - HMPREF1058_RS02655 0.63 +1.1 134,598 + HMPREF1058_RS02655 0.66 -3.4 134,835 + +1.7 134,835 + -0.4 134,840 + -1.6 134,840 + +1.2 134,840 + +0.1 134,841 - +0.2 134,845 - +0.9 134,887 + -2.0 134,898 + -1.6 134,902 + +1.3 134,903 - +1.0 134,922 + -1.5 134,923 - -0.5
Or see this region's nucleotide sequence