Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01265

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS01275 and HMPREF1058_RS01270 are separated by 8 nucleotidesHMPREF1058_RS01270 and HMPREF1058_RS01265 are separated by 4 nucleotidesHMPREF1058_RS01265 and HMPREF1058_RS01260 are separated by 15 nucleotides HMPREF1058_RS01275: HMPREF1058_RS01275 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 166,090 to 167,127 _RS01275 HMPREF1058_RS01270: HMPREF1058_RS01270 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 167,136 to 167,645 _RS01270 HMPREF1058_RS01265: HMPREF1058_RS01265 - FHA domain-containing protein, at 167,650 to 168,174 _RS01265 HMPREF1058_RS01260: HMPREF1058_RS01260 - SPOR domain-containing protein, at 168,190 to 169,320 _RS01260 Position (kb) 167 168 169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 166.750 kb on + strand, within HMPREF1058_RS01275at 166.751 kb on - strand, within HMPREF1058_RS01275at 166.756 kb on - strand, within HMPREF1058_RS01275at 166.779 kb on - strand, within HMPREF1058_RS01275at 166.813 kb on + strand, within HMPREF1058_RS01275at 166.821 kb on + strand, within HMPREF1058_RS01275at 166.927 kb on + strand, within HMPREF1058_RS01275at 166.930 kb on + strand, within HMPREF1058_RS01275at 166.930 kb on + strand, within HMPREF1058_RS01275at 166.933 kb on - strand, within HMPREF1058_RS01275at 166.954 kb on + strand, within HMPREF1058_RS01275at 167.075 kb on - strandat 167.131 kb on - strandat 167.173 kb on + strandat 167.174 kb on - strandat 167.175 kb on + strandat 167.196 kb on + strand, within HMPREF1058_RS01270at 167.196 kb on + strand, within HMPREF1058_RS01270at 167.200 kb on + strand, within HMPREF1058_RS01270at 167.271 kb on + strand, within HMPREF1058_RS01270at 167.272 kb on - strand, within HMPREF1058_RS01270at 167.356 kb on - strand, within HMPREF1058_RS01270at 167.387 kb on + strand, within HMPREF1058_RS01270at 167.388 kb on - strand, within HMPREF1058_RS01270at 167.394 kb on + strand, within HMPREF1058_RS01270at 167.418 kb on + strand, within HMPREF1058_RS01270at 167.418 kb on + strand, within HMPREF1058_RS01270at 167.419 kb on - strand, within HMPREF1058_RS01270at 167.419 kb on - strand, within HMPREF1058_RS01270at 167.464 kb on - strand, within HMPREF1058_RS01270at 167.464 kb on - strand, within HMPREF1058_RS01270at 167.543 kb on + strand, within HMPREF1058_RS01270at 167.544 kb on - strand, within HMPREF1058_RS01270at 167.548 kb on - strand, within HMPREF1058_RS01270at 167.552 kb on - strand, within HMPREF1058_RS01270at 167.634 kb on - strandat 167.651 kb on + strandat 167.793 kb on - strand, within HMPREF1058_RS01265at 167.832 kb on + strand, within HMPREF1058_RS01265at 167.938 kb on + strand, within HMPREF1058_RS01265at 167.939 kb on - strand, within HMPREF1058_RS01265at 167.939 kb on - strand, within HMPREF1058_RS01265at 167.948 kb on + strand, within HMPREF1058_RS01265at 168.114 kb on + strand, within HMPREF1058_RS01265at 168.117 kb on - strand, within HMPREF1058_RS01265at 168.137 kb on - strandat 168.139 kb on - strandat 168.139 kb on - strandat 168.141 kb on - strandat 168.192 kb on - strandat 168.270 kb on + strandat 168.326 kb on - strand, within HMPREF1058_RS01260at 168.357 kb on + strand, within HMPREF1058_RS01260at 168.408 kb on - strand, within HMPREF1058_RS01260at 168.408 kb on - strand, within HMPREF1058_RS01260at 168.408 kb on - strand, within HMPREF1058_RS01260at 168.411 kb on - strand, within HMPREF1058_RS01260at 168.528 kb on + strand, within HMPREF1058_RS01260at 168.709 kb on + strand, within HMPREF1058_RS01260at 168.723 kb on + strand, within HMPREF1058_RS01260at 168.723 kb on + strand, within HMPREF1058_RS01260at 168.737 kb on + strand, within HMPREF1058_RS01260at 168.738 kb on - strand, within HMPREF1058_RS01260at 168.738 kb on - strand, within HMPREF1058_RS01260at 168.738 kb on - strand, within HMPREF1058_RS01260at 168.779 kb on - strand, within HMPREF1058_RS01260at 168.904 kb on + strand, within HMPREF1058_RS01260at 168.927 kb on + strand, within HMPREF1058_RS01260at 168.928 kb on - strand, within HMPREF1058_RS01260at 168.928 kb on - strand, within HMPREF1058_RS01260at 168.928 kb on - strand, within HMPREF1058_RS01260at 168.938 kb on - strand, within HMPREF1058_RS01260at 168.980 kb on + strand, within HMPREF1058_RS01260at 168.981 kb on - strand, within HMPREF1058_RS01260at 168.981 kb on - strand, within HMPREF1058_RS01260at 168.997 kb on - strand, within HMPREF1058_RS01260at 169.003 kb on + strand, within HMPREF1058_RS01260at 169.046 kb on - strand, within HMPREF1058_RS01260at 169.078 kb on + strand, within HMPREF1058_RS01260at 169.079 kb on - strand, within HMPREF1058_RS01260at 169.151 kb on - strand, within HMPREF1058_RS01260

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
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166,750 + HMPREF1058_RS01275 0.64 -0.1
166,751 - HMPREF1058_RS01275 0.64 -1.5
166,756 - HMPREF1058_RS01275 0.64 +0.1
166,779 - HMPREF1058_RS01275 0.66 +0.1
166,813 + HMPREF1058_RS01275 0.70 -0.9
166,821 + HMPREF1058_RS01275 0.70 -1.9
166,927 + HMPREF1058_RS01275 0.81 -0.8
166,930 + HMPREF1058_RS01275 0.81 -0.9
166,930 + HMPREF1058_RS01275 0.81 -0.2
166,933 - HMPREF1058_RS01275 0.81 +0.1
166,954 + HMPREF1058_RS01275 0.83 +1.1
167,075 - +0.1
167,131 - -1.9
167,173 + -0.2
167,174 - -1.4
167,175 + +0.1
167,196 + HMPREF1058_RS01270 0.12 -1.7
167,196 + HMPREF1058_RS01270 0.12 -0.4
167,200 + HMPREF1058_RS01270 0.13 +0.1
167,271 + HMPREF1058_RS01270 0.26 +0.7
167,272 - HMPREF1058_RS01270 0.27 -1.7
167,356 - HMPREF1058_RS01270 0.43 -2.8
167,387 + HMPREF1058_RS01270 0.49 -2.0
167,388 - HMPREF1058_RS01270 0.49 -2.6
167,394 + HMPREF1058_RS01270 0.51 -0.7
167,418 + HMPREF1058_RS01270 0.55 -2.2
167,418 + HMPREF1058_RS01270 0.55 -2.0
167,419 - HMPREF1058_RS01270 0.55 -3.7
167,419 - HMPREF1058_RS01270 0.55 -3.3
167,464 - HMPREF1058_RS01270 0.64 -2.2
167,464 - HMPREF1058_RS01270 0.64 -0.7
167,543 + HMPREF1058_RS01270 0.80 -2.2
167,544 - HMPREF1058_RS01270 0.80 +0.0
167,548 - HMPREF1058_RS01270 0.81 -3.0
167,552 - HMPREF1058_RS01270 0.82 -0.3
167,634 - -0.2
167,651 + -1.9
167,793 - HMPREF1058_RS01265 0.27 -0.4
167,832 + HMPREF1058_RS01265 0.35 -1.2
167,938 + HMPREF1058_RS01265 0.55 -2.2
167,939 - HMPREF1058_RS01265 0.55 -1.3
167,939 - HMPREF1058_RS01265 0.55 +1.9
167,948 + HMPREF1058_RS01265 0.57 -1.4
168,114 + HMPREF1058_RS01265 0.88 -2.4
168,117 - HMPREF1058_RS01265 0.89 -2.7
168,137 - -1.2
168,139 - -1.4
168,139 - +0.1
168,141 - +0.0
168,192 - -1.1
168,270 + -2.4
168,326 - HMPREF1058_RS01260 0.12 -1.3
168,357 + HMPREF1058_RS01260 0.15 +0.6
168,408 - HMPREF1058_RS01260 0.19 -2.7
168,408 - HMPREF1058_RS01260 0.19 -1.6
168,408 - HMPREF1058_RS01260 0.19 +0.1
168,411 - HMPREF1058_RS01260 0.20 -0.7
168,528 + HMPREF1058_RS01260 0.30 -2.7
168,709 + HMPREF1058_RS01260 0.46 -3.9
168,723 + HMPREF1058_RS01260 0.47 -1.7
168,723 + HMPREF1058_RS01260 0.47 -2.4
168,737 + HMPREF1058_RS01260 0.48 -2.0
168,738 - HMPREF1058_RS01260 0.48 -2.2
168,738 - HMPREF1058_RS01260 0.48 +0.3
168,738 - HMPREF1058_RS01260 0.48 +0.8
168,779 - HMPREF1058_RS01260 0.52 -3.3
168,904 + HMPREF1058_RS01260 0.63 -1.9
168,927 + HMPREF1058_RS01260 0.65 -2.2
168,928 - HMPREF1058_RS01260 0.65 +0.8
168,928 - HMPREF1058_RS01260 0.65 -1.5
168,928 - HMPREF1058_RS01260 0.65 +0.3
168,938 - HMPREF1058_RS01260 0.66 -0.4
168,980 + HMPREF1058_RS01260 0.70 -2.9
168,981 - HMPREF1058_RS01260 0.70 -1.8
168,981 - HMPREF1058_RS01260 0.70 +1.3
168,997 - HMPREF1058_RS01260 0.71 -0.4
169,003 + HMPREF1058_RS01260 0.72 -1.2
169,046 - HMPREF1058_RS01260 0.76 -0.9
169,078 + HMPREF1058_RS01260 0.79 -2.1
169,079 - HMPREF1058_RS01260 0.79 -0.7
169,151 - HMPREF1058_RS01260 0.85 -1.2

Or see this region's nucleotide sequence