Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01260 and HMPREF1058_RS01255 are separated by 118 nucleotides HMPREF1058_RS01255 and HMPREF1058_RS01250 are separated by 23 nucleotides HMPREF1058_RS01250 and HMPREF1058_RS01245 are separated by 8 nucleotides
HMPREF1058_RS01260: HMPREF1058_RS01260 - SPOR domain-containing protein, at 168,190 to 169,320
_RS01260
HMPREF1058_RS01255: HMPREF1058_RS01255 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 169,439 to 170,752
_RS01255
HMPREF1058_RS01250: HMPREF1058_RS01250 - DUF4738 domain-containing protein, at 170,776 to 171,564
_RS01250
HMPREF1058_RS01245: HMPREF1058_RS01245 - hypothetical protein, at 171,573 to 171,890
_RS01245
Position (kb) 169
170
171 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 168.528 kb on + strand, within HMPREF1058_RS01260 at 168.709 kb on + strand, within HMPREF1058_RS01260 at 168.723 kb on + strand, within HMPREF1058_RS01260 at 168.723 kb on + strand, within HMPREF1058_RS01260 at 168.737 kb on + strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.779 kb on - strand, within HMPREF1058_RS01260 at 168.904 kb on + strand, within HMPREF1058_RS01260 at 168.927 kb on + strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.938 kb on - strand, within HMPREF1058_RS01260 at 168.980 kb on + strand, within HMPREF1058_RS01260 at 168.981 kb on - strand, within HMPREF1058_RS01260 at 168.981 kb on - strand, within HMPREF1058_RS01260 at 168.997 kb on - strand, within HMPREF1058_RS01260 at 169.003 kb on + strand, within HMPREF1058_RS01260 at 169.046 kb on - strand, within HMPREF1058_RS01260 at 169.078 kb on + strand, within HMPREF1058_RS01260 at 169.079 kb on - strand, within HMPREF1058_RS01260 at 169.151 kb on - strand, within HMPREF1058_RS01260 at 169.180 kb on - strand, within HMPREF1058_RS01260 at 169.180 kb on - strand, within HMPREF1058_RS01260 at 169.184 kb on - strand, within HMPREF1058_RS01260 at 169.243 kb on - strand at 169.300 kb on - strand at 169.340 kb on + strand at 169.515 kb on + strand at 169.530 kb on + strand at 169.568 kb on - strand at 169.574 kb on - strand, within HMPREF1058_RS01255 at 169.614 kb on + strand, within HMPREF1058_RS01255 at 169.615 kb on - strand, within HMPREF1058_RS01255 at 169.731 kb on - strand, within HMPREF1058_RS01255 at 169.763 kb on - strand, within HMPREF1058_RS01255 at 169.776 kb on - strand, within HMPREF1058_RS01255 at 169.915 kb on + strand, within HMPREF1058_RS01255 at 169.963 kb on - strand, within HMPREF1058_RS01255 at 170.070 kb on - strand, within HMPREF1058_RS01255 at 170.151 kb on + strand, within HMPREF1058_RS01255 at 170.152 kb on - strand, within HMPREF1058_RS01255 at 170.155 kb on + strand, within HMPREF1058_RS01255 at 170.155 kb on + strand, within HMPREF1058_RS01255 at 170.458 kb on - strand, within HMPREF1058_RS01255 at 170.502 kb on - strand, within HMPREF1058_RS01255 at 170.515 kb on + strand, within HMPREF1058_RS01255 at 170.566 kb on + strand, within HMPREF1058_RS01255 at 170.570 kb on + strand, within HMPREF1058_RS01255 at 170.570 kb on + strand, within HMPREF1058_RS01255 at 170.571 kb on - strand, within HMPREF1058_RS01255 at 170.571 kb on - strand, within HMPREF1058_RS01255 at 170.571 kb on - strand, within HMPREF1058_RS01255 at 170.636 kb on - strand at 170.697 kb on - strand at 170.755 kb on - strand at 170.779 kb on + strand at 170.779 kb on + strand at 170.780 kb on - strand at 170.780 kb on - strand at 170.893 kb on - strand, within HMPREF1058_RS01250 at 170.894 kb on + strand, within HMPREF1058_RS01250 at 170.894 kb on + strand, within HMPREF1058_RS01250 at 170.895 kb on - strand, within HMPREF1058_RS01250 at 171.010 kb on - strand, within HMPREF1058_RS01250 at 171.061 kb on - strand, within HMPREF1058_RS01250 at 171.095 kb on + strand, within HMPREF1058_RS01250 at 171.105 kb on + strand, within HMPREF1058_RS01250 at 171.106 kb on - strand, within HMPREF1058_RS01250 at 171.145 kb on - strand, within HMPREF1058_RS01250 at 171.163 kb on + strand, within HMPREF1058_RS01250 at 171.164 kb on - strand, within HMPREF1058_RS01250 at 171.164 kb on - strand, within HMPREF1058_RS01250 at 171.200 kb on - strand, within HMPREF1058_RS01250 at 171.223 kb on + strand, within HMPREF1058_RS01250 at 171.229 kb on + strand, within HMPREF1058_RS01250 at 171.229 kb on + strand, within HMPREF1058_RS01250 at 171.230 kb on - strand, within HMPREF1058_RS01250 at 171.299 kb on + strand, within HMPREF1058_RS01250 at 171.300 kb on - strand, within HMPREF1058_RS01250 at 171.302 kb on - strand, within HMPREF1058_RS01250 at 171.302 kb on - strand, within HMPREF1058_RS01250 at 171.304 kb on + strand, within HMPREF1058_RS01250 at 171.305 kb on - strand, within HMPREF1058_RS01250 at 171.312 kb on + strand, within HMPREF1058_RS01250 at 171.313 kb on - strand, within HMPREF1058_RS01250 at 171.317 kb on + strand, within HMPREF1058_RS01250 at 171.318 kb on - strand, within HMPREF1058_RS01250 at 171.332 kb on - strand, within HMPREF1058_RS01250 at 171.332 kb on - strand, within HMPREF1058_RS01250 at 171.353 kb on - strand, within HMPREF1058_RS01250 at 171.419 kb on + strand, within HMPREF1058_RS01250 at 171.505 kb on + strand at 171.505 kb on + strand at 171.508 kb on - strand at 171.573 kb on - strand at 171.600 kb on + strand at 171.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 168,528 + HMPREF1058_RS01260 0.30 -2.7 168,709 + HMPREF1058_RS01260 0.46 -3.9 168,723 + HMPREF1058_RS01260 0.47 -1.7 168,723 + HMPREF1058_RS01260 0.47 -2.4 168,737 + HMPREF1058_RS01260 0.48 -2.0 168,738 - HMPREF1058_RS01260 0.48 -2.2 168,738 - HMPREF1058_RS01260 0.48 +0.3 168,738 - HMPREF1058_RS01260 0.48 +0.8 168,779 - HMPREF1058_RS01260 0.52 -3.3 168,904 + HMPREF1058_RS01260 0.63 -1.9 168,927 + HMPREF1058_RS01260 0.65 -2.2 168,928 - HMPREF1058_RS01260 0.65 +0.8 168,928 - HMPREF1058_RS01260 0.65 -1.5 168,928 - HMPREF1058_RS01260 0.65 +0.3 168,938 - HMPREF1058_RS01260 0.66 -0.4 168,980 + HMPREF1058_RS01260 0.70 -2.9 168,981 - HMPREF1058_RS01260 0.70 -1.8 168,981 - HMPREF1058_RS01260 0.70 +1.3 168,997 - HMPREF1058_RS01260 0.71 -0.4 169,003 + HMPREF1058_RS01260 0.72 -1.2 169,046 - HMPREF1058_RS01260 0.76 -0.9 169,078 + HMPREF1058_RS01260 0.79 -2.1 169,079 - HMPREF1058_RS01260 0.79 -0.7 169,151 - HMPREF1058_RS01260 0.85 -1.2 169,180 - HMPREF1058_RS01260 0.88 -0.2 169,180 - HMPREF1058_RS01260 0.88 -1.7 169,184 - HMPREF1058_RS01260 0.88 -0.2 169,243 - -0.1 169,300 - +0.8 169,340 + -0.7 169,515 + -1.4 169,530 + -0.9 169,568 - -1.1 169,574 - HMPREF1058_RS01255 0.10 +0.1 169,614 + HMPREF1058_RS01255 0.13 -0.7 169,615 - HMPREF1058_RS01255 0.13 -1.7 169,731 - HMPREF1058_RS01255 0.22 -2.6 169,763 - HMPREF1058_RS01255 0.25 -1.9 169,776 - HMPREF1058_RS01255 0.26 -0.4 169,915 + HMPREF1058_RS01255 0.36 -3.9 169,963 - HMPREF1058_RS01255 0.40 -1.9 170,070 - HMPREF1058_RS01255 0.48 -0.4 170,151 + HMPREF1058_RS01255 0.54 -2.3 170,152 - HMPREF1058_RS01255 0.54 -0.4 170,155 + HMPREF1058_RS01255 0.54 -3.0 170,155 + HMPREF1058_RS01255 0.54 -1.9 170,458 - HMPREF1058_RS01255 0.78 -1.7 170,502 - HMPREF1058_RS01255 0.81 -0.9 170,515 + HMPREF1058_RS01255 0.82 -0.4 170,566 + HMPREF1058_RS01255 0.86 -1.2 170,570 + HMPREF1058_RS01255 0.86 -1.4 170,570 + HMPREF1058_RS01255 0.86 -2.2 170,571 - HMPREF1058_RS01255 0.86 -0.2 170,571 - HMPREF1058_RS01255 0.86 -0.7 170,571 - HMPREF1058_RS01255 0.86 -2.3 170,636 - -0.9 170,697 - -2.0 170,755 - +0.7 170,779 + -0.7 170,779 + +0.8 170,780 - +0.9 170,780 - +1.3 170,893 - HMPREF1058_RS01250 0.15 +2.0 170,894 + HMPREF1058_RS01250 0.15 +1.6 170,894 + HMPREF1058_RS01250 0.15 -0.3 170,895 - HMPREF1058_RS01250 0.15 -2.3 171,010 - HMPREF1058_RS01250 0.30 +2.1 171,061 - HMPREF1058_RS01250 0.36 -1.9 171,095 + HMPREF1058_RS01250 0.40 +0.2 171,105 + HMPREF1058_RS01250 0.42 -1.7 171,106 - HMPREF1058_RS01250 0.42 +0.6 171,145 - HMPREF1058_RS01250 0.47 -1.2 171,163 + HMPREF1058_RS01250 0.49 -1.5 171,164 - HMPREF1058_RS01250 0.49 +1.1 171,164 - HMPREF1058_RS01250 0.49 -0.0 171,200 - HMPREF1058_RS01250 0.54 -1.5 171,223 + HMPREF1058_RS01250 0.57 +1.8 171,229 + HMPREF1058_RS01250 0.57 +0.9 171,229 + HMPREF1058_RS01250 0.57 -1.4 171,230 - HMPREF1058_RS01250 0.58 +0.5 171,299 + HMPREF1058_RS01250 0.66 -0.2 171,300 - HMPREF1058_RS01250 0.66 +0.4 171,302 - HMPREF1058_RS01250 0.67 +1.9 171,302 - HMPREF1058_RS01250 0.67 +0.7 171,304 + HMPREF1058_RS01250 0.67 +1.3 171,305 - HMPREF1058_RS01250 0.67 -0.6 171,312 + HMPREF1058_RS01250 0.68 +1.5 171,313 - HMPREF1058_RS01250 0.68 +0.3 171,317 + HMPREF1058_RS01250 0.69 +1.4 171,318 - HMPREF1058_RS01250 0.69 +1.7 171,332 - HMPREF1058_RS01250 0.70 +2.5 171,332 - HMPREF1058_RS01250 0.70 +1.2 171,353 - HMPREF1058_RS01250 0.73 -1.4 171,419 + HMPREF1058_RS01250 0.81 +0.8 171,505 + -0.3 171,505 + +0.9 171,508 - +0.4 171,573 - +1.0 171,600 + +1.1 171,601 - +0.7
Or see this region's nucleotide sequence