Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06220 and HMPREF1058_RS0119805 are separated by 324 nucleotides HMPREF1058_RS0119805 and HMPREF1058_RS06215 overlap by 11 nucleotides HMPREF1058_RS06215 and HMPREF1058_RS06210 are separated by 556 nucleotides
HMPREF1058_RS06220: HMPREF1058_RS06220 - ABC transporter permease, at 532,316 to 533,560
_RS06220
HMPREF1058_RS0119805: HMPREF1058_RS0119805 - lysine exporter LysO family protein, at 533,885 to 534,505
_RS0119805
HMPREF1058_RS06215: HMPREF1058_RS06215 - LysO family transporter, at 534,495 to 534,782
_RS06215
HMPREF1058_RS06210: HMPREF1058_RS06210 - antibiotic biosynthesis monooxygenase, at 535,339 to 535,614
_RS06210
Position (kb) 533
534
535 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 533.614 kb on + strand at 533.642 kb on + strand at 533.664 kb on + strand at 533.665 kb on - strand at 533.690 kb on - strand at 533.701 kb on + strand at 533.711 kb on + strand at 533.734 kb on - strand at 533.797 kb on + strand at 533.853 kb on - strand at 533.862 kb on + strand at 533.864 kb on + strand at 533.864 kb on + strand at 533.864 kb on + strand at 533.865 kb on - strand at 533.867 kb on + strand at 533.868 kb on - strand at 533.924 kb on + strand at 533.924 kb on + strand at 533.925 kb on - strand at 533.925 kb on - strand at 533.930 kb on + strand at 534.077 kb on + strand, within HMPREF1058_RS0119805 at 534.104 kb on - strand, within HMPREF1058_RS0119805 at 534.113 kb on + strand, within HMPREF1058_RS0119805 at 534.202 kb on - strand, within HMPREF1058_RS0119805 at 534.396 kb on - strand, within HMPREF1058_RS0119805 at 534.399 kb on + strand, within HMPREF1058_RS0119805 at 534.399 kb on + strand, within HMPREF1058_RS0119805 at 534.399 kb on + strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.401 kb on + strand, within HMPREF1058_RS0119805 at 534.401 kb on + strand, within HMPREF1058_RS0119805 at 534.401 kb on + strand, within HMPREF1058_RS0119805 at 534.404 kb on + strand, within HMPREF1058_RS0119805 at 534.404 kb on + strand, within HMPREF1058_RS0119805 at 534.404 kb on + strand, within HMPREF1058_RS0119805 at 534.405 kb on - strand, within HMPREF1058_RS0119805 at 534.405 kb on - strand, within HMPREF1058_RS0119805 at 534.405 kb on - strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.409 kb on - strand, within HMPREF1058_RS0119805 at 534.409 kb on - strand, within HMPREF1058_RS0119805 at 534.409 kb on - strand, within HMPREF1058_RS0119805 at 534.410 kb on + strand, within HMPREF1058_RS0119805 at 534.488 kb on + strand at 534.539 kb on - strand, within HMPREF1058_RS06215 at 534.541 kb on - strand, within HMPREF1058_RS06215 at 534.570 kb on + strand, within HMPREF1058_RS06215 at 534.577 kb on - strand, within HMPREF1058_RS06215 at 534.627 kb on - strand, within HMPREF1058_RS06215 at 534.741 kb on + strand, within HMPREF1058_RS06215 at 534.741 kb on + strand, within HMPREF1058_RS06215 at 534.741 kb on + strand, within HMPREF1058_RS06215 at 534.741 kb on + strand, within HMPREF1058_RS06215 at 534.742 kb on - strand, within HMPREF1058_RS06215 at 534.742 kb on - strand, within HMPREF1058_RS06215 at 534.742 kb on - strand, within HMPREF1058_RS06215 at 534.742 kb on - strand, within HMPREF1058_RS06215 at 534.765 kb on - strand at 534.813 kb on - strand at 534.816 kb on - strand at 534.819 kb on + strand at 534.851 kb on + strand at 534.851 kb on + strand at 534.852 kb on - strand at 534.853 kb on + strand at 534.853 kb on + strand at 534.895 kb on + strand at 534.900 kb on - strand at 534.977 kb on + strand at 534.984 kb on - strand at 535.026 kb on - strand at 535.090 kb on + strand at 535.091 kb on - strand at 535.199 kb on - strand at 535.225 kb on + strand at 535.225 kb on + strand at 535.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 533,614 + -4.8 533,642 + +0.7 533,664 + +0.2 533,665 - -1.2 533,690 - +0.6 533,701 + -0.0 533,711 + -0.4 533,734 - -0.0 533,797 + -0.4 533,853 - -0.6 533,862 + +1.7 533,864 + -1.0 533,864 + -0.0 533,864 + -1.0 533,865 - -2.3 533,867 + +0.2 533,868 - -2.2 533,924 + +1.2 533,924 + +1.5 533,925 - -2.8 533,925 - -0.6 533,930 + +0.2 534,077 + HMPREF1058_RS0119805 0.31 +0.3 534,104 - HMPREF1058_RS0119805 0.35 +0.5 534,113 + HMPREF1058_RS0119805 0.37 +0.8 534,202 - HMPREF1058_RS0119805 0.51 -0.6 534,396 - HMPREF1058_RS0119805 0.82 -1.0 534,399 + HMPREF1058_RS0119805 0.83 +0.8 534,399 + HMPREF1058_RS0119805 0.83 -0.6 534,399 + HMPREF1058_RS0119805 0.83 -0.8 534,400 - HMPREF1058_RS0119805 0.83 -1.7 534,400 - HMPREF1058_RS0119805 0.83 -0.1 534,400 - HMPREF1058_RS0119805 0.83 -2.8 534,400 - HMPREF1058_RS0119805 0.83 -1.7 534,401 + HMPREF1058_RS0119805 0.83 -2.5 534,401 + HMPREF1058_RS0119805 0.83 -0.0 534,401 + HMPREF1058_RS0119805 0.83 -0.6 534,404 + HMPREF1058_RS0119805 0.84 -1.4 534,404 + HMPREF1058_RS0119805 0.84 +0.1 534,404 + HMPREF1058_RS0119805 0.84 -0.7 534,405 - HMPREF1058_RS0119805 0.84 -2.2 534,405 - HMPREF1058_RS0119805 0.84 -2.0 534,405 - HMPREF1058_RS0119805 0.84 +0.9 534,408 + HMPREF1058_RS0119805 0.84 -1.4 534,408 + HMPREF1058_RS0119805 0.84 -0.1 534,408 + HMPREF1058_RS0119805 0.84 -0.3 534,408 + HMPREF1058_RS0119805 0.84 +1.0 534,409 - HMPREF1058_RS0119805 0.84 -1.8 534,409 - HMPREF1058_RS0119805 0.84 -3.3 534,409 - HMPREF1058_RS0119805 0.84 -3.6 534,410 + HMPREF1058_RS0119805 0.85 -0.9 534,488 + -0.0 534,539 - HMPREF1058_RS06215 0.15 +0.7 534,541 - HMPREF1058_RS06215 0.16 +0.0 534,570 + HMPREF1058_RS06215 0.26 +0.4 534,577 - HMPREF1058_RS06215 0.28 -1.9 534,627 - HMPREF1058_RS06215 0.46 +2.4 534,741 + HMPREF1058_RS06215 0.85 +0.3 534,741 + HMPREF1058_RS06215 0.85 +0.3 534,741 + HMPREF1058_RS06215 0.85 -2.2 534,741 + HMPREF1058_RS06215 0.85 -1.8 534,742 - HMPREF1058_RS06215 0.86 +0.6 534,742 - HMPREF1058_RS06215 0.86 +1.1 534,742 - HMPREF1058_RS06215 0.86 -0.7 534,742 - HMPREF1058_RS06215 0.86 -0.6 534,765 - -3.3 534,813 - +1.1 534,816 - -1.9 534,819 + -0.4 534,851 + -0.1 534,851 + -1.1 534,852 - -0.4 534,853 + -1.5 534,853 + +1.0 534,895 + +1.6 534,900 - -1.0 534,977 + +5.2 534,984 - -1.7 535,026 - -0.8 535,090 + +0.2 535,091 - -1.0 535,199 - -0.1 535,225 + -0.4 535,225 + -0.2 535,291 + -0.7
Or see this region's nucleotide sequence