Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17070

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17075 and HMPREF1058_RS17070 are separated by 135 nucleotidesHMPREF1058_RS17070 and HMPREF1058_RS17065 are separated by 53 nucleotides HMPREF1058_RS17075: HMPREF1058_RS17075 - inositol-3-phosphate synthase, at 524,649 to 525,956 _RS17075 HMPREF1058_RS17070: HMPREF1058_RS17070 - ribokinase, at 526,092 to 526,988 _RS17070 HMPREF1058_RS17065: HMPREF1058_RS17065 - sugar MFS transporter, at 527,042 to 528,241 _RS17065 Position (kb) 526 527Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 525.103 kb on - strand, within HMPREF1058_RS17075at 525.197 kb on + strand, within HMPREF1058_RS17075at 525.269 kb on + strand, within HMPREF1058_RS17075at 525.270 kb on - strand, within HMPREF1058_RS17075at 525.290 kb on + strand, within HMPREF1058_RS17075at 525.337 kb on + strand, within HMPREF1058_RS17075at 525.344 kb on - strand, within HMPREF1058_RS17075at 525.386 kb on + strand, within HMPREF1058_RS17075at 525.439 kb on + strand, within HMPREF1058_RS17075at 525.440 kb on - strand, within HMPREF1058_RS17075at 525.440 kb on - strand, within HMPREF1058_RS17075at 525.563 kb on + strand, within HMPREF1058_RS17075at 525.586 kb on + strand, within HMPREF1058_RS17075at 525.587 kb on - strand, within HMPREF1058_RS17075at 525.587 kb on - strand, within HMPREF1058_RS17075at 525.587 kb on - strand, within HMPREF1058_RS17075at 525.619 kb on - strand, within HMPREF1058_RS17075at 525.648 kb on - strand, within HMPREF1058_RS17075at 525.776 kb on - strand, within HMPREF1058_RS17075at 525.809 kb on + strand, within HMPREF1058_RS17075at 525.852 kb on - strandat 525.888 kb on - strandat 526.017 kb on + strandat 526.083 kb on + strandat 526.087 kb on + strandat 526.088 kb on - strandat 526.122 kb on - strandat 526.127 kb on - strandat 526.127 kb on - strandat 526.158 kb on + strandat 526.159 kb on - strandat 526.159 kb on - strandat 526.160 kb on + strandat 526.160 kb on + strandat 526.208 kb on - strand, within HMPREF1058_RS17070at 526.304 kb on + strand, within HMPREF1058_RS17070at 526.304 kb on + strand, within HMPREF1058_RS17070at 526.305 kb on - strand, within HMPREF1058_RS17070at 526.326 kb on + strand, within HMPREF1058_RS17070at 526.337 kb on + strand, within HMPREF1058_RS17070at 526.338 kb on - strand, within HMPREF1058_RS17070at 526.341 kb on + strand, within HMPREF1058_RS17070at 526.341 kb on + strand, within HMPREF1058_RS17070at 526.341 kb on + strand, within HMPREF1058_RS17070at 526.420 kb on + strand, within HMPREF1058_RS17070at 526.421 kb on - strand, within HMPREF1058_RS17070at 526.502 kb on + strand, within HMPREF1058_RS17070at 526.502 kb on + strand, within HMPREF1058_RS17070at 526.504 kb on + strand, within HMPREF1058_RS17070at 526.504 kb on + strand, within HMPREF1058_RS17070at 526.505 kb on - strand, within HMPREF1058_RS17070at 526.514 kb on - strand, within HMPREF1058_RS17070at 526.527 kb on + strand, within HMPREF1058_RS17070at 526.531 kb on + strand, within HMPREF1058_RS17070at 526.672 kb on + strand, within HMPREF1058_RS17070at 526.679 kb on - strand, within HMPREF1058_RS17070at 526.710 kb on - strand, within HMPREF1058_RS17070at 526.749 kb on - strand, within HMPREF1058_RS17070at 526.786 kb on + strand, within HMPREF1058_RS17070at 526.787 kb on - strand, within HMPREF1058_RS17070at 526.790 kb on - strand, within HMPREF1058_RS17070at 526.790 kb on - strand, within HMPREF1058_RS17070at 526.812 kb on - strand, within HMPREF1058_RS17070at 526.815 kb on + strand, within HMPREF1058_RS17070at 526.815 kb on + strand, within HMPREF1058_RS17070at 526.816 kb on - strand, within HMPREF1058_RS17070at 526.816 kb on - strand, within HMPREF1058_RS17070at 526.831 kb on + strand, within HMPREF1058_RS17070at 526.833 kb on + strand, within HMPREF1058_RS17070at 526.833 kb on + strand, within HMPREF1058_RS17070at 526.833 kb on + strand, within HMPREF1058_RS17070at 526.834 kb on - strand, within HMPREF1058_RS17070at 526.834 kb on - strand, within HMPREF1058_RS17070at 526.834 kb on - strand, within HMPREF1058_RS17070at 526.857 kb on + strand, within HMPREF1058_RS17070at 526.887 kb on - strand, within HMPREF1058_RS17070at 526.942 kb on + strandat 526.942 kb on + strandat 526.943 kb on - strandat 527.064 kb on + strandat 527.073 kb on + strandat 527.086 kb on + strandat 527.086 kb on + strandat 527.087 kb on - strandat 527.117 kb on + strandat 527.131 kb on + strandat 527.132 kb on - strandat 527.135 kb on - strandat 527.145 kb on + strandat 527.281 kb on - strand, within HMPREF1058_RS17065at 527.281 kb on - strand, within HMPREF1058_RS17065at 527.316 kb on - strand, within HMPREF1058_RS17065at 527.366 kb on + strand, within HMPREF1058_RS17065at 527.502 kb on + strand, within HMPREF1058_RS17065at 527.502 kb on + strand, within HMPREF1058_RS17065at 527.509 kb on + strand, within HMPREF1058_RS17065at 527.518 kb on + strand, within HMPREF1058_RS17065at 527.525 kb on - strand, within HMPREF1058_RS17065at 527.545 kb on - strand, within HMPREF1058_RS17065at 527.576 kb on + strand, within HMPREF1058_RS17065at 527.684 kb on + strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.707 kb on - strand, within HMPREF1058_RS17065at 527.707 kb on - strand, within HMPREF1058_RS17065at 527.720 kb on - strand, within HMPREF1058_RS17065at 527.783 kb on + strand, within HMPREF1058_RS17065at 527.851 kb on + strand, within HMPREF1058_RS17065at 527.852 kb on - strand, within HMPREF1058_RS17065

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9
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525,103 - HMPREF1058_RS17075 0.35 -2.3
525,197 + HMPREF1058_RS17075 0.42 -1.5
525,269 + HMPREF1058_RS17075 0.47 -0.4
525,270 - HMPREF1058_RS17075 0.47 -0.4
525,290 + HMPREF1058_RS17075 0.49 -2.3
525,337 + HMPREF1058_RS17075 0.53 -2.2
525,344 - HMPREF1058_RS17075 0.53 -0.4
525,386 + HMPREF1058_RS17075 0.56 -0.5
525,439 + HMPREF1058_RS17075 0.60 -1.6
525,440 - HMPREF1058_RS17075 0.60 +0.2
525,440 - HMPREF1058_RS17075 0.60 -1.5
525,563 + HMPREF1058_RS17075 0.70 -1.8
525,586 + HMPREF1058_RS17075 0.72 -1.0
525,587 - HMPREF1058_RS17075 0.72 -1.4
525,587 - HMPREF1058_RS17075 0.72 +0.5
525,587 - HMPREF1058_RS17075 0.72 -1.0
525,619 - HMPREF1058_RS17075 0.74 -2.6
525,648 - HMPREF1058_RS17075 0.76 -0.9
525,776 - HMPREF1058_RS17075 0.86 -3.5
525,809 + HMPREF1058_RS17075 0.89 -1.3
525,852 - -2.5
525,888 - -2.1
526,017 + -0.6
526,083 + -3.3
526,087 + -1.7
526,088 - +0.2
526,122 - -3.4
526,127 - -2.3
526,127 - -2.1
526,158 + -2.8
526,159 - -1.5
526,159 - -0.3
526,160 + -0.4
526,160 + -1.5
526,208 - HMPREF1058_RS17070 0.13 -2.1
526,304 + HMPREF1058_RS17070 0.24 -1.0
526,304 + HMPREF1058_RS17070 0.24 -1.8
526,305 - HMPREF1058_RS17070 0.24 -2.5
526,326 + HMPREF1058_RS17070 0.26 -3.6
526,337 + HMPREF1058_RS17070 0.27 -1.3
526,338 - HMPREF1058_RS17070 0.27 -1.3
526,341 + HMPREF1058_RS17070 0.28 -0.1
526,341 + HMPREF1058_RS17070 0.28 -2.9
526,341 + HMPREF1058_RS17070 0.28 -2.0
526,420 + HMPREF1058_RS17070 0.37 -2.7
526,421 - HMPREF1058_RS17070 0.37 -0.8
526,502 + HMPREF1058_RS17070 0.46 -2.9
526,502 + HMPREF1058_RS17070 0.46 -0.8
526,504 + HMPREF1058_RS17070 0.46 -2.2
526,504 + HMPREF1058_RS17070 0.46 -0.8
526,505 - HMPREF1058_RS17070 0.46 -3.6
526,514 - HMPREF1058_RS17070 0.47 -1.6
526,527 + HMPREF1058_RS17070 0.48 -3.6
526,531 + HMPREF1058_RS17070 0.49 -3.2
526,672 + HMPREF1058_RS17070 0.65 -4.2
526,679 - HMPREF1058_RS17070 0.65 -2.9
526,710 - HMPREF1058_RS17070 0.69 -1.0
526,749 - HMPREF1058_RS17070 0.73 -2.5
526,786 + HMPREF1058_RS17070 0.77 -4.7
526,787 - HMPREF1058_RS17070 0.77 -4.4
526,790 - HMPREF1058_RS17070 0.78 -3.4
526,790 - HMPREF1058_RS17070 0.78 -1.5
526,812 - HMPREF1058_RS17070 0.80 -1.0
526,815 + HMPREF1058_RS17070 0.81 -3.1
526,815 + HMPREF1058_RS17070 0.81 -2.4
526,816 - HMPREF1058_RS17070 0.81 -1.2
526,816 - HMPREF1058_RS17070 0.81 -2.7
526,831 + HMPREF1058_RS17070 0.82 -2.1
526,833 + HMPREF1058_RS17070 0.83 -3.0
526,833 + HMPREF1058_RS17070 0.83 -1.4
526,833 + HMPREF1058_RS17070 0.83 -3.4
526,834 - HMPREF1058_RS17070 0.83 -2.0
526,834 - HMPREF1058_RS17070 0.83 -3.4
526,834 - HMPREF1058_RS17070 0.83 -2.3
526,857 + HMPREF1058_RS17070 0.85 -3.6
526,887 - HMPREF1058_RS17070 0.89 -2.5
526,942 + -4.0
526,942 + -0.4
526,943 - -1.1
527,064 + -0.6
527,073 + -2.4
527,086 + -0.8
527,086 + +0.6
527,087 - -0.0
527,117 + -0.1
527,131 + +0.0
527,132 - -3.5
527,135 - -0.4
527,145 + -1.8
527,281 - HMPREF1058_RS17065 0.20 -1.0
527,281 - HMPREF1058_RS17065 0.20 -3.3
527,316 - HMPREF1058_RS17065 0.23 -1.2
527,366 + HMPREF1058_RS17065 0.27 -1.0
527,502 + HMPREF1058_RS17065 0.38 -2.3
527,502 + HMPREF1058_RS17065 0.38 -2.9
527,509 + HMPREF1058_RS17065 0.39 -0.1
527,518 + HMPREF1058_RS17065 0.40 +1.0
527,525 - HMPREF1058_RS17065 0.40 +0.2
527,545 - HMPREF1058_RS17065 0.42 -0.6
527,576 + HMPREF1058_RS17065 0.45 -1.8
527,684 + HMPREF1058_RS17065 0.54 -0.7
527,705 - HMPREF1058_RS17065 0.55 -0.1
527,705 - HMPREF1058_RS17065 0.55 -1.8
527,705 - HMPREF1058_RS17065 0.55 -0.7
527,705 - HMPREF1058_RS17065 0.55 -1.2
527,706 + HMPREF1058_RS17065 0.55 -0.1
527,706 + HMPREF1058_RS17065 0.55 -0.1
527,706 + HMPREF1058_RS17065 0.55 -0.6
527,706 + HMPREF1058_RS17065 0.55 -0.1
527,707 - HMPREF1058_RS17065 0.55 -1.6
527,707 - HMPREF1058_RS17065 0.55 -0.5
527,720 - HMPREF1058_RS17065 0.56 -1.1
527,783 + HMPREF1058_RS17065 0.62 +0.3
527,851 + HMPREF1058_RS17065 0.67 +1.6
527,852 - HMPREF1058_RS17065 0.68 +0.4

Or see this region's nucleotide sequence