Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16055 and HMPREF1058_RS16050 are separated by 7 nucleotides HMPREF1058_RS16050 and HMPREF1058_RS16045 are separated by 1 nucleotides HMPREF1058_RS16045 and HMPREF1058_RS16040 overlap by 4 nucleotides
HMPREF1058_RS16055: HMPREF1058_RS16055 - AAA family ATPase, at 769,057 to 770,673
_RS16055
HMPREF1058_RS16050: HMPREF1058_RS16050 - hypothetical protein, at 770,681 to 771,319
_RS16050
HMPREF1058_RS16045: HMPREF1058_RS16045 - hypothetical protein, at 771,321 to 773,771
_RS16045
HMPREF1058_RS16040: HMPREF1058_RS16040 - AAA family ATPase, at 773,768 to 777,652
_RS16040
Position (kb) 771
772
773
774 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 770.330 kb on + strand, within HMPREF1058_RS16055 at 770.358 kb on - strand, within HMPREF1058_RS16055 at 770.391 kb on + strand, within HMPREF1058_RS16055 at 770.643 kb on + strand at 770.694 kb on - strand at 770.696 kb on - strand at 770.750 kb on - strand, within HMPREF1058_RS16050 at 770.857 kb on + strand, within HMPREF1058_RS16050 at 770.937 kb on - strand, within HMPREF1058_RS16050 at 770.950 kb on + strand, within HMPREF1058_RS16050 at 770.950 kb on + strand, within HMPREF1058_RS16050 at 770.994 kb on + strand, within HMPREF1058_RS16050 at 770.999 kb on - strand, within HMPREF1058_RS16050 at 771.042 kb on + strand, within HMPREF1058_RS16050 at 771.061 kb on - strand, within HMPREF1058_RS16050 at 771.106 kb on + strand, within HMPREF1058_RS16050 at 771.108 kb on + strand, within HMPREF1058_RS16050 at 771.109 kb on - strand, within HMPREF1058_RS16050 at 771.109 kb on - strand, within HMPREF1058_RS16050 at 771.111 kb on + strand, within HMPREF1058_RS16050 at 771.112 kb on - strand, within HMPREF1058_RS16050 at 771.118 kb on + strand, within HMPREF1058_RS16050 at 771.119 kb on - strand, within HMPREF1058_RS16050 at 771.119 kb on - strand, within HMPREF1058_RS16050 at 771.119 kb on - strand, within HMPREF1058_RS16050 at 771.120 kb on + strand, within HMPREF1058_RS16050 at 771.121 kb on - strand, within HMPREF1058_RS16050 at 771.121 kb on - strand, within HMPREF1058_RS16050 at 771.121 kb on - strand, within HMPREF1058_RS16050 at 771.125 kb on + strand, within HMPREF1058_RS16050 at 771.125 kb on + strand, within HMPREF1058_RS16050 at 771.203 kb on + strand, within HMPREF1058_RS16050 at 771.203 kb on + strand, within HMPREF1058_RS16050 at 771.225 kb on + strand, within HMPREF1058_RS16050 at 771.256 kb on + strand at 771.262 kb on + strand at 771.262 kb on + strand at 771.262 kb on + strand at 771.266 kb on + strand at 771.266 kb on + strand at 771.266 kb on + strand at 771.267 kb on - strand at 771.319 kb on + strand at 771.332 kb on + strand at 771.333 kb on - strand at 771.355 kb on - strand at 771.512 kb on + strand at 771.512 kb on + strand at 771.513 kb on - strand at 771.514 kb on + strand at 771.514 kb on + strand at 771.515 kb on - strand at 771.519 kb on - strand at 771.572 kb on + strand, within HMPREF1058_RS16045 at 771.573 kb on - strand, within HMPREF1058_RS16045 at 771.814 kb on - strand, within HMPREF1058_RS16045 at 771.919 kb on - strand, within HMPREF1058_RS16045 at 771.933 kb on - strand, within HMPREF1058_RS16045 at 771.951 kb on + strand at 771.952 kb on - strand, within HMPREF1058_RS16045 at 771.995 kb on + strand, within HMPREF1058_RS16045 at 771.996 kb on - strand, within HMPREF1058_RS16045 at 772.026 kb on - strand, within HMPREF1058_RS16045 at 772.038 kb on + strand, within HMPREF1058_RS16045 at 772.110 kb on - strand, within HMPREF1058_RS16045 at 772.137 kb on + strand, within HMPREF1058_RS16045 at 772.163 kb on + strand, within HMPREF1058_RS16045 at 772.220 kb on + strand, within HMPREF1058_RS16045 at 772.233 kb on - strand, within HMPREF1058_RS16045 at 772.265 kb on + strand, within HMPREF1058_RS16045 at 772.265 kb on + strand, within HMPREF1058_RS16045 at 772.265 kb on + strand, within HMPREF1058_RS16045 at 772.265 kb on + strand, within HMPREF1058_RS16045 at 772.306 kb on + strand, within HMPREF1058_RS16045 at 772.310 kb on + strand, within HMPREF1058_RS16045 at 772.357 kb on - strand, within HMPREF1058_RS16045 at 772.541 kb on + strand, within HMPREF1058_RS16045 at 772.542 kb on - strand, within HMPREF1058_RS16045 at 772.542 kb on - strand, within HMPREF1058_RS16045 at 772.559 kb on + strand, within HMPREF1058_RS16045 at 772.559 kb on + strand, within HMPREF1058_RS16045 at 772.644 kb on - strand, within HMPREF1058_RS16045 at 772.681 kb on - strand, within HMPREF1058_RS16045 at 772.681 kb on - strand, within HMPREF1058_RS16045 at 772.734 kb on + strand, within HMPREF1058_RS16045 at 772.744 kb on + strand, within HMPREF1058_RS16045 at 772.849 kb on - strand, within HMPREF1058_RS16045 at 772.851 kb on + strand, within HMPREF1058_RS16045 at 772.851 kb on + strand, within HMPREF1058_RS16045 at 772.926 kb on + strand, within HMPREF1058_RS16045 at 772.959 kb on - strand, within HMPREF1058_RS16045 at 772.959 kb on - strand, within HMPREF1058_RS16045 at 772.961 kb on + strand at 773.085 kb on - strand, within HMPREF1058_RS16045 at 773.104 kb on + strand, within HMPREF1058_RS16045 at 773.105 kb on - strand, within HMPREF1058_RS16045 at 773.105 kb on - strand, within HMPREF1058_RS16045 at 773.106 kb on + strand, within HMPREF1058_RS16045 at 773.107 kb on - strand, within HMPREF1058_RS16045 at 773.107 kb on - strand, within HMPREF1058_RS16045 at 773.107 kb on - strand, within HMPREF1058_RS16045 at 773.159 kb on - strand, within HMPREF1058_RS16045 at 773.296 kb on - strand, within HMPREF1058_RS16045 at 773.310 kb on + strand, within HMPREF1058_RS16045 at 773.329 kb on + strand, within HMPREF1058_RS16045 at 773.329 kb on + strand, within HMPREF1058_RS16045 at 773.329 kb on + strand, within HMPREF1058_RS16045 at 773.332 kb on - strand, within HMPREF1058_RS16045 at 773.334 kb on - strand, within HMPREF1058_RS16045 at 773.350 kb on + strand, within HMPREF1058_RS16045 at 773.354 kb on + strand, within HMPREF1058_RS16045 at 773.355 kb on - strand, within HMPREF1058_RS16045 at 773.381 kb on - strand, within HMPREF1058_RS16045 at 773.409 kb on - strand, within HMPREF1058_RS16045 at 773.409 kb on - strand, within HMPREF1058_RS16045 at 773.557 kb on - strand at 773.617 kb on + strand at 773.617 kb on + strand at 773.617 kb on + strand at 773.617 kb on + strand at 773.618 kb on - strand at 773.618 kb on - strand at 773.618 kb on - strand at 773.621 kb on + strand at 773.621 kb on + strand at 773.622 kb on - strand at 773.622 kb on - strand at 773.622 kb on - strand at 773.637 kb on - strand at 773.651 kb on + strand at 773.691 kb on + strand at 773.717 kb on + strand at 773.718 kb on - strand at 773.727 kb on + strand at 773.775 kb on - strand at 773.833 kb on - strand at 773.842 kb on + strand at 773.876 kb on - strand at 773.911 kb on + strand at 773.911 kb on + strand at 773.912 kb on - strand at 774.022 kb on + strand at 774.023 kb on - strand at 774.024 kb on + strand at 774.072 kb on + strand at 774.072 kb on + strand at 774.079 kb on + strand at 774.089 kb on + strand at 774.174 kb on - strand, within HMPREF1058_RS16040 at 774.212 kb on + strand, within HMPREF1058_RS16040 at 774.213 kb on - strand, within HMPREF1058_RS16040 at 774.216 kb on + strand, within HMPREF1058_RS16040 at 774.216 kb on + strand, within HMPREF1058_RS16040 at 774.271 kb on + strand, within HMPREF1058_RS16040 at 774.279 kb on - strand, within HMPREF1058_RS16040 at 774.286 kb on + strand, within HMPREF1058_RS16040 at 774.299 kb on - strand, within HMPREF1058_RS16040 at 774.332 kb on - strand, within HMPREF1058_RS16040 at 774.332 kb on - strand, within HMPREF1058_RS16040 at 774.341 kb on + strand, within HMPREF1058_RS16040 at 774.341 kb on + strand, within HMPREF1058_RS16040 at 774.385 kb on - strand, within HMPREF1058_RS16040 at 774.400 kb on + strand, within HMPREF1058_RS16040 at 774.421 kb on + strand, within HMPREF1058_RS16040 at 774.422 kb on - strand, within HMPREF1058_RS16040 at 774.422 kb on - strand, within HMPREF1058_RS16040 at 774.422 kb on - strand, within HMPREF1058_RS16040 at 774.566 kb on - strand, within HMPREF1058_RS16040 at 774.566 kb on - strand, within HMPREF1058_RS16040 at 774.623 kb on - strand, within HMPREF1058_RS16040 at 774.679 kb on - strand, within HMPREF1058_RS16040 at 774.680 kb on - strand, within HMPREF1058_RS16040 at 774.683 kb on + strand, within HMPREF1058_RS16040 at 774.684 kb on - strand, within HMPREF1058_RS16040 at 774.766 kb on + strand, within HMPREF1058_RS16040 at 774.766 kb on + strand, within HMPREF1058_RS16040 at 774.766 kb on + strand, within HMPREF1058_RS16040 at 774.767 kb on - strand, within HMPREF1058_RS16040 at 774.769 kb on + strand, within HMPREF1058_RS16040
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 remove 770,330 + HMPREF1058_RS16055 0.79 +2.0 770,358 - HMPREF1058_RS16055 0.80 -2.3 770,391 + HMPREF1058_RS16055 0.82 -1.7 770,643 + -1.5 770,694 - -0.4 770,696 - -1.3 770,750 - HMPREF1058_RS16050 0.11 -0.5 770,857 + HMPREF1058_RS16050 0.28 -0.8 770,937 - HMPREF1058_RS16050 0.40 +1.2 770,950 + HMPREF1058_RS16050 0.42 -1.2 770,950 + HMPREF1058_RS16050 0.42 -1.9 770,994 + HMPREF1058_RS16050 0.49 -1.1 770,999 - HMPREF1058_RS16050 0.50 -1.5 771,042 + HMPREF1058_RS16050 0.56 -1.0 771,061 - HMPREF1058_RS16050 0.59 -0.3 771,106 + HMPREF1058_RS16050 0.67 -4.3 771,108 + HMPREF1058_RS16050 0.67 -1.0 771,109 - HMPREF1058_RS16050 0.67 -1.0 771,109 - HMPREF1058_RS16050 0.67 +0.3 771,111 + HMPREF1058_RS16050 0.67 -0.3 771,112 - HMPREF1058_RS16050 0.67 +3.0 771,118 + HMPREF1058_RS16050 0.68 +2.0 771,119 - HMPREF1058_RS16050 0.69 -1.0 771,119 - HMPREF1058_RS16050 0.69 +0.5 771,119 - HMPREF1058_RS16050 0.69 -0.5 771,120 + HMPREF1058_RS16050 0.69 -2.7 771,121 - HMPREF1058_RS16050 0.69 -1.2 771,121 - HMPREF1058_RS16050 0.69 +0.0 771,121 - HMPREF1058_RS16050 0.69 -0.5 771,125 + HMPREF1058_RS16050 0.69 +0.1 771,125 + HMPREF1058_RS16050 0.69 -0.1 771,203 + HMPREF1058_RS16050 0.82 +2.4 771,203 + HMPREF1058_RS16050 0.82 -2.7 771,225 + HMPREF1058_RS16050 0.85 +0.0 771,256 + -0.8 771,262 + +0.2 771,262 + -0.2 771,262 + -0.9 771,266 + -0.3 771,266 + +0.5 771,266 + -0.3 771,267 - -0.4 771,319 + -0.4 771,332 + -0.7 771,333 - -0.5 771,355 - -0.8 771,512 + +0.0 771,512 + +2.0 771,513 - +0.3 771,514 + -1.9 771,514 + +0.9 771,515 - +1.0 771,519 - -3.0 771,572 + HMPREF1058_RS16045 0.10 +2.0 771,573 - HMPREF1058_RS16045 0.10 -2.2 771,814 - HMPREF1058_RS16045 0.20 -1.0 771,919 - HMPREF1058_RS16045 0.24 +0.4 771,933 - HMPREF1058_RS16045 0.25 -0.7 771,951 + +1.0 771,952 - HMPREF1058_RS16045 0.26 +1.4 771,995 + HMPREF1058_RS16045 0.27 +0.0 771,996 - HMPREF1058_RS16045 0.28 +2.2 772,026 - HMPREF1058_RS16045 0.29 +0.5 772,038 + HMPREF1058_RS16045 0.29 -1.4 772,110 - HMPREF1058_RS16045 0.32 -0.5 772,137 + HMPREF1058_RS16045 0.33 -1.6 772,163 + HMPREF1058_RS16045 0.34 -0.5 772,220 + HMPREF1058_RS16045 0.37 -0.8 772,233 - HMPREF1058_RS16045 0.37 -0.1 772,265 + HMPREF1058_RS16045 0.39 -3.0 772,265 + HMPREF1058_RS16045 0.39 -0.8 772,265 + HMPREF1058_RS16045 0.39 -2.2 772,265 + HMPREF1058_RS16045 0.39 -1.3 772,306 + HMPREF1058_RS16045 0.40 -0.3 772,310 + HMPREF1058_RS16045 0.40 +0.0 772,357 - HMPREF1058_RS16045 0.42 +0.5 772,541 + HMPREF1058_RS16045 0.50 -1.3 772,542 - HMPREF1058_RS16045 0.50 +1.0 772,542 - HMPREF1058_RS16045 0.50 -1.0 772,559 + HMPREF1058_RS16045 0.51 -2.4 772,559 + HMPREF1058_RS16045 0.51 -1.3 772,644 - HMPREF1058_RS16045 0.54 -0.6 772,681 - HMPREF1058_RS16045 0.55 -1.6 772,681 - HMPREF1058_RS16045 0.55 +0.9 772,734 + HMPREF1058_RS16045 0.58 -0.9 772,744 + HMPREF1058_RS16045 0.58 -0.6 772,849 - HMPREF1058_RS16045 0.62 -1.8 772,851 + HMPREF1058_RS16045 0.62 -0.3 772,851 + HMPREF1058_RS16045 0.62 -1.1 772,926 + HMPREF1058_RS16045 0.65 -1.0 772,959 - HMPREF1058_RS16045 0.67 -1.8 772,959 - HMPREF1058_RS16045 0.67 -1.3 772,961 + +1.0 773,085 - HMPREF1058_RS16045 0.72 -1.5 773,104 + HMPREF1058_RS16045 0.73 -0.8 773,105 - HMPREF1058_RS16045 0.73 -0.9 773,105 - HMPREF1058_RS16045 0.73 +0.5 773,106 + HMPREF1058_RS16045 0.73 -2.7 773,107 - HMPREF1058_RS16045 0.73 -0.4 773,107 - HMPREF1058_RS16045 0.73 -1.5 773,107 - HMPREF1058_RS16045 0.73 -2.8 773,159 - HMPREF1058_RS16045 0.75 -0.3 773,296 - HMPREF1058_RS16045 0.81 +2.4 773,310 + HMPREF1058_RS16045 0.81 -0.3 773,329 + HMPREF1058_RS16045 0.82 -1.3 773,329 + HMPREF1058_RS16045 0.82 -1.1 773,329 + HMPREF1058_RS16045 0.82 +0.2 773,332 - HMPREF1058_RS16045 0.82 +0.7 773,334 - HMPREF1058_RS16045 0.82 -0.9 773,350 + HMPREF1058_RS16045 0.83 -1.1 773,354 + HMPREF1058_RS16045 0.83 +1.8 773,355 - HMPREF1058_RS16045 0.83 -0.5 773,381 - HMPREF1058_RS16045 0.84 -0.1 773,409 - HMPREF1058_RS16045 0.85 +0.6 773,409 - HMPREF1058_RS16045 0.85 -1.8 773,557 - -0.1 773,617 + +0.0 773,617 + -0.3 773,617 + -2.4 773,617 + +0.4 773,618 - -0.2 773,618 - -2.7 773,618 - -0.6 773,621 + -1.4 773,621 + +0.6 773,622 - +0.4 773,622 - -1.5 773,622 - +1.0 773,637 - -1.3 773,651 + -0.3 773,691 + -2.3 773,717 + -1.0 773,718 - +0.2 773,727 + +0.8 773,775 - -2.4 773,833 - +0.0 773,842 + -0.3 773,876 - -1.0 773,911 + -0.4 773,911 + +0.5 773,912 - -1.5 774,022 + -0.5 774,023 - -0.8 774,024 + -1.5 774,072 + -3.0 774,072 + +0.8 774,079 + +1.9 774,089 + -1.0 774,174 - HMPREF1058_RS16040 0.10 -1.4 774,212 + HMPREF1058_RS16040 0.11 +0.6 774,213 - HMPREF1058_RS16040 0.11 -2.5 774,216 + HMPREF1058_RS16040 0.12 +0.2 774,216 + HMPREF1058_RS16040 0.12 +0.6 774,271 + HMPREF1058_RS16040 0.13 -0.1 774,279 - HMPREF1058_RS16040 0.13 -3.2 774,286 + HMPREF1058_RS16040 0.13 +0.1 774,299 - HMPREF1058_RS16040 0.14 +0.1 774,332 - HMPREF1058_RS16040 0.15 -0.9 774,332 - HMPREF1058_RS16040 0.15 -1.5 774,341 + HMPREF1058_RS16040 0.15 +0.5 774,341 + HMPREF1058_RS16040 0.15 -0.0 774,385 - HMPREF1058_RS16040 0.16 -4.8 774,400 + HMPREF1058_RS16040 0.16 -1.1 774,421 + HMPREF1058_RS16040 0.17 -2.7 774,422 - HMPREF1058_RS16040 0.17 -1.9 774,422 - HMPREF1058_RS16040 0.17 -1.4 774,422 - HMPREF1058_RS16040 0.17 -1.4 774,566 - HMPREF1058_RS16040 0.21 +2.1 774,566 - HMPREF1058_RS16040 0.21 -2.8 774,623 - HMPREF1058_RS16040 0.22 +0.5 774,679 - HMPREF1058_RS16040 0.23 -1.3 774,680 - HMPREF1058_RS16040 0.23 -2.2 774,683 + HMPREF1058_RS16040 0.24 -1.2 774,684 - HMPREF1058_RS16040 0.24 -2.5 774,766 + HMPREF1058_RS16040 0.26 +0.1 774,766 + HMPREF1058_RS16040 0.26 +0.1 774,766 + HMPREF1058_RS16040 0.26 -1.7 774,767 - HMPREF1058_RS16040 0.26 -3.0 774,769 + HMPREF1058_RS16040 0.26 -0.1
Or see this region's nucleotide sequence