Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08075 and HMPREF1058_RS08070 are separated by 177 nucleotides HMPREF1058_RS08070 and HMPREF1058_RS08065 are separated by 8 nucleotides HMPREF1058_RS08065 and HMPREF1058_RS08060 are separated by 51 nucleotides
HMPREF1058_RS08075: HMPREF1058_RS08075 - hypothetical protein, at 59,954 to 60,727
_RS08075
HMPREF1058_RS08070: HMPREF1058_RS08070 - alpha-L-fucosidase, at 60,905 to 62,944
_RS08070
HMPREF1058_RS08065: HMPREF1058_RS08065 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 62,953 to 63,855
_RS08065
HMPREF1058_RS08060: HMPREF1058_RS08060 - hypothetical protein, at 63,907 to 64,470
_RS08060
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 59.914 kb on + strand at 59.914 kb on + strand at 59.914 kb on + strand at 59.916 kb on + strand at 59.923 kb on - strand at 59.936 kb on + strand at 60.068 kb on + strand, within HMPREF1058_RS08075 at 60.142 kb on + strand, within HMPREF1058_RS08075 at 60.143 kb on - strand, within HMPREF1058_RS08075 at 60.144 kb on + strand, within HMPREF1058_RS08075 at 60.164 kb on - strand, within HMPREF1058_RS08075 at 60.248 kb on - strand, within HMPREF1058_RS08075 at 60.248 kb on - strand, within HMPREF1058_RS08075 at 60.347 kb on - strand, within HMPREF1058_RS08075 at 60.430 kb on + strand, within HMPREF1058_RS08075 at 60.430 kb on + strand, within HMPREF1058_RS08075 at 60.499 kb on - strand, within HMPREF1058_RS08075 at 60.499 kb on - strand, within HMPREF1058_RS08075 at 60.678 kb on + strand at 60.678 kb on + strand at 60.682 kb on - strand at 60.744 kb on - strand at 60.767 kb on - strand at 60.795 kb on - strand at 60.798 kb on - strand at 60.827 kb on + strand at 60.829 kb on + strand at 60.877 kb on + strand at 60.890 kb on - strand at 61.036 kb on + strand at 61.232 kb on + strand, within HMPREF1058_RS08070 at 61.232 kb on + strand, within HMPREF1058_RS08070 at 61.232 kb on + strand, within HMPREF1058_RS08070 at 61.246 kb on + strand, within HMPREF1058_RS08070 at 61.464 kb on - strand, within HMPREF1058_RS08070 at 61.514 kb on + strand, within HMPREF1058_RS08070 at 61.527 kb on - strand, within HMPREF1058_RS08070 at 61.553 kb on - strand, within HMPREF1058_RS08070 at 61.554 kb on + strand, within HMPREF1058_RS08070 at 61.555 kb on - strand, within HMPREF1058_RS08070 at 61.555 kb on - strand, within HMPREF1058_RS08070 at 61.603 kb on - strand, within HMPREF1058_RS08070 at 61.612 kb on + strand, within HMPREF1058_RS08070 at 61.651 kb on + strand, within HMPREF1058_RS08070 at 61.651 kb on + strand, within HMPREF1058_RS08070 at 61.790 kb on - strand, within HMPREF1058_RS08070 at 61.837 kb on + strand, within HMPREF1058_RS08070 at 61.945 kb on - strand, within HMPREF1058_RS08070 at 62.206 kb on - strand, within HMPREF1058_RS08070 at 62.262 kb on - strand, within HMPREF1058_RS08070 at 62.266 kb on + strand, within HMPREF1058_RS08070 at 62.446 kb on + strand, within HMPREF1058_RS08070 at 62.475 kb on - strand, within HMPREF1058_RS08070 at 62.537 kb on + strand, within HMPREF1058_RS08070 at 62.575 kb on + strand, within HMPREF1058_RS08070 at 62.907 kb on - strand at 62.931 kb on - strand at 62.931 kb on - strand at 62.934 kb on - strand at 62.973 kb on + strand at 62.974 kb on - strand at 63.123 kb on - strand, within HMPREF1058_RS08065 at 63.140 kb on + strand, within HMPREF1058_RS08065 at 63.181 kb on + strand, within HMPREF1058_RS08065 at 63.182 kb on - strand, within HMPREF1058_RS08065 at 63.182 kb on - strand, within HMPREF1058_RS08065 at 63.182 kb on - strand, within HMPREF1058_RS08065 at 63.249 kb on - strand, within HMPREF1058_RS08065 at 63.350 kb on + strand, within HMPREF1058_RS08065 at 63.350 kb on + strand, within HMPREF1058_RS08065 at 63.350 kb on + strand, within HMPREF1058_RS08065 at 63.356 kb on - strand, within HMPREF1058_RS08065 at 63.370 kb on + strand, within HMPREF1058_RS08065 at 63.370 kb on + strand, within HMPREF1058_RS08065 at 63.371 kb on - strand, within HMPREF1058_RS08065 at 63.520 kb on + strand, within HMPREF1058_RS08065 at 63.541 kb on + strand, within HMPREF1058_RS08065 at 63.541 kb on + strand, within HMPREF1058_RS08065 at 63.541 kb on + strand, within HMPREF1058_RS08065 at 63.542 kb on - strand, within HMPREF1058_RS08065 at 63.542 kb on - strand, within HMPREF1058_RS08065 at 63.542 kb on - strand, within HMPREF1058_RS08065 at 63.543 kb on + strand, within HMPREF1058_RS08065 at 63.545 kb on + strand, within HMPREF1058_RS08065 at 63.545 kb on + strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.568 kb on + strand, within HMPREF1058_RS08065 at 63.571 kb on + strand, within HMPREF1058_RS08065 at 63.572 kb on - strand, within HMPREF1058_RS08065 at 63.613 kb on + strand, within HMPREF1058_RS08065 at 63.626 kb on + strand, within HMPREF1058_RS08065 at 63.674 kb on + strand, within HMPREF1058_RS08065 at 63.722 kb on - strand, within HMPREF1058_RS08065 at 63.799 kb on + strand at 63.814 kb on + strand at 63.815 kb on - strand at 63.887 kb on - strand at 63.908 kb on + strand at 63.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 remove 59,914 + -1.2 59,914 + -0.4 59,914 + -1.6 59,916 + +0.6 59,923 - -1.6 59,936 + -0.2 60,068 + HMPREF1058_RS08075 0.15 -1.4 60,142 + HMPREF1058_RS08075 0.24 -1.6 60,143 - HMPREF1058_RS08075 0.24 -0.6 60,144 + HMPREF1058_RS08075 0.25 -2.0 60,164 - HMPREF1058_RS08075 0.27 -0.1 60,248 - HMPREF1058_RS08075 0.38 -1.6 60,248 - HMPREF1058_RS08075 0.38 -0.6 60,347 - HMPREF1058_RS08075 0.51 -1.4 60,430 + HMPREF1058_RS08075 0.61 -0.2 60,430 + HMPREF1058_RS08075 0.61 +1.2 60,499 - HMPREF1058_RS08075 0.70 +0.5 60,499 - HMPREF1058_RS08075 0.70 -0.3 60,678 + -1.0 60,678 + +0.2 60,682 - +2.0 60,744 - +1.2 60,767 - +0.2 60,795 - +1.5 60,798 - -1.8 60,827 + +1.2 60,829 + -0.6 60,877 + -0.7 60,890 - -1.5 61,036 + -1.6 61,232 + HMPREF1058_RS08070 0.16 +0.0 61,232 + HMPREF1058_RS08070 0.16 -1.3 61,232 + HMPREF1058_RS08070 0.16 +0.4 61,246 + HMPREF1058_RS08070 0.17 -1.2 61,464 - HMPREF1058_RS08070 0.27 -3.9 61,514 + HMPREF1058_RS08070 0.30 -0.9 61,527 - HMPREF1058_RS08070 0.30 +0.2 61,553 - HMPREF1058_RS08070 0.32 +0.3 61,554 + HMPREF1058_RS08070 0.32 -0.0 61,555 - HMPREF1058_RS08070 0.32 -1.6 61,555 - HMPREF1058_RS08070 0.32 -1.4 61,603 - HMPREF1058_RS08070 0.34 -1.2 61,612 + HMPREF1058_RS08070 0.35 -1.2 61,651 + HMPREF1058_RS08070 0.37 -1.3 61,651 + HMPREF1058_RS08070 0.37 -1.4 61,790 - HMPREF1058_RS08070 0.43 -0.9 61,837 + HMPREF1058_RS08070 0.46 -0.4 61,945 - HMPREF1058_RS08070 0.51 -0.8 62,206 - HMPREF1058_RS08070 0.64 -0.9 62,262 - HMPREF1058_RS08070 0.67 -0.5 62,266 + HMPREF1058_RS08070 0.67 -0.4 62,446 + HMPREF1058_RS08070 0.76 -1.1 62,475 - HMPREF1058_RS08070 0.77 +0.2 62,537 + HMPREF1058_RS08070 0.80 -0.6 62,575 + HMPREF1058_RS08070 0.82 -1.1 62,907 - -0.6 62,931 - -0.1 62,931 - -0.2 62,934 - +0.3 62,973 + +0.6 62,974 - -2.4 63,123 - HMPREF1058_RS08065 0.19 -0.8 63,140 + HMPREF1058_RS08065 0.21 -3.6 63,181 + HMPREF1058_RS08065 0.25 -0.9 63,182 - HMPREF1058_RS08065 0.25 -1.6 63,182 - HMPREF1058_RS08065 0.25 -1.2 63,182 - HMPREF1058_RS08065 0.25 -1.8 63,249 - HMPREF1058_RS08065 0.33 -2.6 63,350 + HMPREF1058_RS08065 0.44 +0.2 63,350 + HMPREF1058_RS08065 0.44 -2.0 63,350 + HMPREF1058_RS08065 0.44 +0.2 63,356 - HMPREF1058_RS08065 0.45 -2.4 63,370 + HMPREF1058_RS08065 0.46 -0.4 63,370 + HMPREF1058_RS08065 0.46 -1.2 63,371 - HMPREF1058_RS08065 0.46 +0.2 63,520 + HMPREF1058_RS08065 0.63 -2.9 63,541 + HMPREF1058_RS08065 0.65 -2.3 63,541 + HMPREF1058_RS08065 0.65 -1.1 63,541 + HMPREF1058_RS08065 0.65 -2.9 63,542 - HMPREF1058_RS08065 0.65 -1.2 63,542 - HMPREF1058_RS08065 0.65 -1.8 63,542 - HMPREF1058_RS08065 0.65 -1.9 63,543 + HMPREF1058_RS08065 0.65 -2.3 63,545 + HMPREF1058_RS08065 0.66 -4.0 63,545 + HMPREF1058_RS08065 0.66 -2.9 63,546 - HMPREF1058_RS08065 0.66 -1.9 63,546 - HMPREF1058_RS08065 0.66 -2.0 63,546 - HMPREF1058_RS08065 0.66 -0.8 63,546 - HMPREF1058_RS08065 0.66 -4.2 63,568 + HMPREF1058_RS08065 0.68 -2.7 63,571 + HMPREF1058_RS08065 0.68 -3.3 63,572 - HMPREF1058_RS08065 0.69 -3.4 63,613 + HMPREF1058_RS08065 0.73 -3.0 63,626 + HMPREF1058_RS08065 0.75 -0.8 63,674 + HMPREF1058_RS08065 0.80 -3.1 63,722 - HMPREF1058_RS08065 0.85 -1.8 63,799 + -0.4 63,814 + -3.7 63,815 - -0.8 63,887 - -0.1 63,908 + -1.9 63,927 - -4.7
Or see this region's nucleotide sequence