Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03760 and MPMX20_03761 are separated by 36 nucleotides MPMX20_03761 and MPMX20_03762 are separated by 74 nucleotides MPMX20_03762 and MPMX20_03763 are separated by 125 nucleotides MPMX20_03763 and MPMX20_03764 are separated by 23 nucleotides
MPMX20_03760: MPMX20_03760 - 6-phospho-beta-glucosidase BglA, at 3,960,972 to 3,962,405
_03760
MPMX20_03761: MPMX20_03761 - putative oxidoreductase YgfF, at 3,962,442 to 3,963,185
_03761
MPMX20_03762: MPMX20_03762 - Glycine dehydrogenase (decarboxylating), at 3,963,260 to 3,966,133
_03762
MPMX20_03763: MPMX20_03763 - Glycine cleavage system H protein, at 3,966,259 to 3,966,648
_03763
MPMX20_03764: MPMX20_03764 - Aminomethyltransferase, at 3,966,672 to 3,967,766
_03764
Position (kb)
3963
3964
3965
3966
3967 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3962.261 kb on + strand, within MPMX20_03760 at 3962.266 kb on + strand at 3962.274 kb on - strand at 3962.279 kb on - strand at 3962.279 kb on - strand at 3962.364 kb on - strand at 3962.400 kb on + strand at 3962.571 kb on - strand, within MPMX20_03761 at 3962.583 kb on + strand, within MPMX20_03761 at 3962.632 kb on - strand, within MPMX20_03761 at 3962.652 kb on + strand, within MPMX20_03761 at 3962.652 kb on + strand, within MPMX20_03761 at 3962.657 kb on - strand, within MPMX20_03761 at 3962.704 kb on + strand, within MPMX20_03761 at 3962.704 kb on + strand, within MPMX20_03761 at 3962.797 kb on + strand, within MPMX20_03761 at 3962.805 kb on - strand, within MPMX20_03761 at 3962.837 kb on + strand, within MPMX20_03761 at 3962.877 kb on - strand, within MPMX20_03761 at 3962.877 kb on - strand, within MPMX20_03761 at 3962.884 kb on + strand, within MPMX20_03761 at 3962.884 kb on + strand, within MPMX20_03761 at 3962.884 kb on + strand, within MPMX20_03761 at 3962.892 kb on - strand, within MPMX20_03761 at 3962.892 kb on - strand, within MPMX20_03761 at 3962.892 kb on - strand, within MPMX20_03761 at 3962.892 kb on - strand, within MPMX20_03761 at 3962.892 kb on - strand, within MPMX20_03761 at 3962.900 kb on - strand, within MPMX20_03761 at 3962.926 kb on - strand, within MPMX20_03761 at 3962.943 kb on + strand, within MPMX20_03761 at 3962.990 kb on + strand, within MPMX20_03761 at 3962.996 kb on - strand, within MPMX20_03761 at 3963.073 kb on + strand, within MPMX20_03761 at 3963.081 kb on - strand, within MPMX20_03761 at 3963.105 kb on + strand, within MPMX20_03761 at 3963.105 kb on + strand, within MPMX20_03761 at 3963.106 kb on + strand, within MPMX20_03761 at 3963.113 kb on - strand at 3963.171 kb on - strand at 3963.215 kb on + strand at 3963.216 kb on + strand at 3963.216 kb on + strand at 3963.216 kb on + strand at 3963.216 kb on + strand at 3963.224 kb on - strand at 3963.224 kb on - strand at 3963.226 kb on + strand at 3963.226 kb on + strand at 3963.226 kb on + strand at 3963.234 kb on - strand at 3963.234 kb on - strand at 3963.241 kb on + strand at 3963.288 kb on - strand at 3963.293 kb on + strand at 3963.301 kb on - strand at 3963.309 kb on + strand at 3963.309 kb on + strand at 3963.309 kb on + strand at 3963.317 kb on - strand at 3963.317 kb on - strand at 3963.317 kb on - strand at 3963.317 kb on - strand at 3963.317 kb on - strand at 3963.317 kb on - strand at 3963.317 kb on - strand at 3963.317 kb on - strand at 3963.328 kb on + strand at 3963.371 kb on - strand at 3963.379 kb on + strand at 3963.385 kb on + strand at 3963.392 kb on + strand at 3963.435 kb on + strand at 3963.443 kb on - strand at 3963.456 kb on + strand at 3963.629 kb on - strand, within MPMX20_03762 at 3963.677 kb on + strand, within MPMX20_03762 at 3963.720 kb on + strand, within MPMX20_03762 at 3963.723 kb on - strand, within MPMX20_03762 at 3963.728 kb on - strand, within MPMX20_03762 at 3963.728 kb on - strand, within MPMX20_03762 at 3963.794 kb on - strand, within MPMX20_03762 at 3963.794 kb on - strand, within MPMX20_03762 at 3963.802 kb on + strand, within MPMX20_03762 at 3963.804 kb on - strand, within MPMX20_03762 at 3963.847 kb on + strand, within MPMX20_03762 at 3963.855 kb on - strand, within MPMX20_03762 at 3963.855 kb on - strand, within MPMX20_03762 at 3963.855 kb on - strand, within MPMX20_03762 at 3963.870 kb on + strand, within MPMX20_03762 at 3963.913 kb on + strand, within MPMX20_03762 at 3963.913 kb on + strand, within MPMX20_03762 at 3963.913 kb on + strand, within MPMX20_03762 at 3963.928 kb on - strand, within MPMX20_03762 at 3963.928 kb on - strand, within MPMX20_03762 at 3964.016 kb on - strand, within MPMX20_03762 at 3964.074 kb on + strand, within MPMX20_03762 at 3964.103 kb on - strand, within MPMX20_03762 at 3964.107 kb on + strand, within MPMX20_03762 at 3964.133 kb on - strand, within MPMX20_03762 at 3964.135 kb on + strand, within MPMX20_03762 at 3964.135 kb on + strand, within MPMX20_03762 at 3964.243 kb on - strand, within MPMX20_03762 at 3964.511 kb on - strand, within MPMX20_03762 at 3964.511 kb on - strand, within MPMX20_03762 at 3964.511 kb on - strand, within MPMX20_03762 at 3964.521 kb on - strand, within MPMX20_03762 at 3964.581 kb on + strand, within MPMX20_03762 at 3964.739 kb on + strand, within MPMX20_03762 at 3964.747 kb on - strand, within MPMX20_03762 at 3964.817 kb on - strand, within MPMX20_03762 at 3964.828 kb on + strand, within MPMX20_03762 at 3964.829 kb on + strand, within MPMX20_03762 at 3964.866 kb on + strand, within MPMX20_03762 at 3964.872 kb on - strand, within MPMX20_03762 at 3964.872 kb on - strand, within MPMX20_03762 at 3964.872 kb on - strand, within MPMX20_03762 at 3964.872 kb on - strand, within MPMX20_03762 at 3964.872 kb on - strand, within MPMX20_03762 at 3964.872 kb on - strand, within MPMX20_03762 at 3964.878 kb on + strand, within MPMX20_03762 at 3964.900 kb on + strand, within MPMX20_03762 at 3964.908 kb on - strand, within MPMX20_03762 at 3964.925 kb on + strand, within MPMX20_03762 at 3964.951 kb on + strand, within MPMX20_03762 at 3965.018 kb on + strand, within MPMX20_03762 at 3965.086 kb on - strand, within MPMX20_03762 at 3965.096 kb on - strand, within MPMX20_03762 at 3965.184 kb on + strand, within MPMX20_03762 at 3965.184 kb on + strand, within MPMX20_03762 at 3965.192 kb on - strand, within MPMX20_03762 at 3965.192 kb on - strand, within MPMX20_03762 at 3965.197 kb on - strand, within MPMX20_03762 at 3965.223 kb on - strand, within MPMX20_03762 at 3965.241 kb on + strand, within MPMX20_03762 at 3965.249 kb on - strand, within MPMX20_03762 at 3965.249 kb on - strand, within MPMX20_03762 at 3965.303 kb on - strand, within MPMX20_03762 at 3965.321 kb on - strand, within MPMX20_03762 at 3965.331 kb on - strand, within MPMX20_03762 at 3965.362 kb on - strand, within MPMX20_03762 at 3965.492 kb on + strand, within MPMX20_03762 at 3965.518 kb on - strand, within MPMX20_03762 at 3965.550 kb on - strand, within MPMX20_03762 at 3965.575 kb on - strand, within MPMX20_03762 at 3965.586 kb on - strand, within MPMX20_03762 at 3965.586 kb on - strand, within MPMX20_03762 at 3965.695 kb on - strand, within MPMX20_03762 at 3965.753 kb on - strand, within MPMX20_03762 at 3965.755 kb on - strand, within MPMX20_03762 at 3965.768 kb on + strand, within MPMX20_03762 at 3965.768 kb on + strand, within MPMX20_03762 at 3965.853 kb on + strand at 3965.864 kb on + strand at 3965.864 kb on + strand at 3965.868 kb on - strand at 3965.872 kb on - strand at 3965.872 kb on - strand at 3965.888 kb on - strand at 3965.895 kb on + strand at 3965.896 kb on - strand at 3965.968 kb on - strand at 3965.983 kb on - strand at 3966.039 kb on + strand at 3966.115 kb on + strand at 3966.115 kb on + strand at 3966.115 kb on + strand at 3966.115 kb on + strand at 3966.115 kb on + strand at 3966.123 kb on - strand at 3966.123 kb on - strand at 3966.181 kb on - strand at 3966.191 kb on + strand at 3966.193 kb on - strand at 3966.196 kb on + strand at 3966.222 kb on - strand at 3966.223 kb on + strand at 3966.223 kb on + strand at 3966.226 kb on - strand at 3966.231 kb on - strand at 3966.231 kb on - strand at 3966.233 kb on + strand at 3966.257 kb on - strand at 3966.257 kb on - strand at 3966.258 kb on - strand at 3966.258 kb on - strand at 3966.274 kb on - strand at 3966.376 kb on - strand, within MPMX20_03763 at 3966.378 kb on + strand, within MPMX20_03763 at 3966.386 kb on - strand, within MPMX20_03763 at 3966.386 kb on - strand, within MPMX20_03763 at 3966.386 kb on - strand, within MPMX20_03763 at 3966.394 kb on - strand, within MPMX20_03763 at 3966.469 kb on - strand, within MPMX20_03763 at 3966.486 kb on - strand, within MPMX20_03763 at 3966.506 kb on + strand, within MPMX20_03763 at 3966.572 kb on + strand, within MPMX20_03763 at 3966.572 kb on - strand, within MPMX20_03763 at 3966.580 kb on - strand, within MPMX20_03763 at 3966.741 kb on + strand at 3966.788 kb on + strand, within MPMX20_03764 at 3966.899 kb on - strand, within MPMX20_03764 at 3967.013 kb on - strand, within MPMX20_03764 at 3967.072 kb on - strand, within MPMX20_03764 at 3967.073 kb on - strand, within MPMX20_03764 at 3967.126 kb on + strand, within MPMX20_03764
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar remove 3,962,261 + MPMX20_03760 0.90 +0.3 3,962,266 + -0.9 3,962,274 - +0.2 3,962,279 - +0.6 3,962,279 - -0.1 3,962,364 - -0.1 3,962,400 + -0.8 3,962,571 - MPMX20_03761 0.17 +0.3 3,962,583 + MPMX20_03761 0.19 -0.6 3,962,632 - MPMX20_03761 0.26 +1.0 3,962,652 + MPMX20_03761 0.28 -1.3 3,962,652 + MPMX20_03761 0.28 +1.1 3,962,657 - MPMX20_03761 0.29 -0.6 3,962,704 + MPMX20_03761 0.35 +0.4 3,962,704 + MPMX20_03761 0.35 +0.2 3,962,797 + MPMX20_03761 0.48 +0.4 3,962,805 - MPMX20_03761 0.49 +0.8 3,962,837 + MPMX20_03761 0.53 -0.2 3,962,877 - MPMX20_03761 0.58 +1.0 3,962,877 - MPMX20_03761 0.58 -0.5 3,962,884 + MPMX20_03761 0.59 -0.4 3,962,884 + MPMX20_03761 0.59 +0.1 3,962,884 + MPMX20_03761 0.59 -0.2 3,962,892 - MPMX20_03761 0.60 +0.0 3,962,892 - MPMX20_03761 0.60 +0.7 3,962,892 - MPMX20_03761 0.60 +0.2 3,962,892 - MPMX20_03761 0.60 -0.2 3,962,892 - MPMX20_03761 0.60 -0.3 3,962,900 - MPMX20_03761 0.62 +0.3 3,962,926 - MPMX20_03761 0.65 +0.2 3,962,943 + MPMX20_03761 0.67 +0.1 3,962,990 + MPMX20_03761 0.74 +0.9 3,962,996 - MPMX20_03761 0.74 -0.6 3,963,073 + MPMX20_03761 0.85 +0.7 3,963,081 - MPMX20_03761 0.86 -0.3 3,963,105 + MPMX20_03761 0.89 -0.9 3,963,105 + MPMX20_03761 0.89 -1.0 3,963,106 + MPMX20_03761 0.89 +1.2 3,963,113 - -3.8 3,963,171 - -0.9 3,963,215 + +1.0 3,963,216 + -0.6 3,963,216 + -1.4 3,963,216 + -2.5 3,963,216 + +0.5 3,963,224 - +1.0 3,963,224 - -1.0 3,963,226 + -0.5 3,963,226 + +0.6 3,963,226 + +0.7 3,963,234 - -0.1 3,963,234 - -0.1 3,963,241 + -1.3 3,963,288 - +1.0 3,963,293 + +0.0 3,963,301 - +0.3 3,963,309 + -1.7 3,963,309 + +1.0 3,963,309 + -0.3 3,963,317 - -2.7 3,963,317 - -0.1 3,963,317 - -1.8 3,963,317 - -1.1 3,963,317 - +0.3 3,963,317 - -0.6 3,963,317 - -1.8 3,963,317 - -1.8 3,963,328 + +1.0 3,963,371 - -2.6 3,963,379 + -1.4 3,963,385 + -1.0 3,963,392 + -0.5 3,963,435 + -1.7 3,963,443 - +0.1 3,963,456 + -1.6 3,963,629 - MPMX20_03762 0.13 -2.1 3,963,677 + MPMX20_03762 0.15 -0.4 3,963,720 + MPMX20_03762 0.16 +0.3 3,963,723 - MPMX20_03762 0.16 -1.0 3,963,728 - MPMX20_03762 0.16 -2.0 3,963,728 - MPMX20_03762 0.16 -2.1 3,963,794 - MPMX20_03762 0.19 -1.0 3,963,794 - MPMX20_03762 0.19 +0.4 3,963,802 + MPMX20_03762 0.19 -0.7 3,963,804 - MPMX20_03762 0.19 +0.1 3,963,847 + MPMX20_03762 0.20 -2.0 3,963,855 - MPMX20_03762 0.21 -1.3 3,963,855 - MPMX20_03762 0.21 -0.2 3,963,855 - MPMX20_03762 0.21 -1.1 3,963,870 + MPMX20_03762 0.21 -0.5 3,963,913 + MPMX20_03762 0.23 -0.4 3,963,913 + MPMX20_03762 0.23 -0.7 3,963,913 + MPMX20_03762 0.23 -0.2 3,963,928 - MPMX20_03762 0.23 +0.0 3,963,928 - MPMX20_03762 0.23 -0.6 3,964,016 - MPMX20_03762 0.26 -2.3 3,964,074 + MPMX20_03762 0.28 -0.5 3,964,103 - MPMX20_03762 0.29 +1.0 3,964,107 + MPMX20_03762 0.29 -0.7 3,964,133 - MPMX20_03762 0.30 -0.5 3,964,135 + MPMX20_03762 0.30 +2.0 3,964,135 + MPMX20_03762 0.30 -0.3 3,964,243 - MPMX20_03762 0.34 -0.8 3,964,511 - MPMX20_03762 0.44 -3.5 3,964,511 - MPMX20_03762 0.44 -0.9 3,964,511 - MPMX20_03762 0.44 -2.4 3,964,521 - MPMX20_03762 0.44 -1.1 3,964,581 + MPMX20_03762 0.46 -1.0 3,964,739 + MPMX20_03762 0.51 +0.4 3,964,747 - MPMX20_03762 0.52 -1.1 3,964,817 - MPMX20_03762 0.54 -0.7 3,964,828 + MPMX20_03762 0.55 +0.4 3,964,829 + MPMX20_03762 0.55 -1.0 3,964,866 + MPMX20_03762 0.56 -1.1 3,964,872 - MPMX20_03762 0.56 +0.0 3,964,872 - MPMX20_03762 0.56 -1.5 3,964,872 - MPMX20_03762 0.56 -1.5 3,964,872 - MPMX20_03762 0.56 -1.7 3,964,872 - MPMX20_03762 0.56 -1.3 3,964,872 - MPMX20_03762 0.56 -1.0 3,964,878 + MPMX20_03762 0.56 -0.6 3,964,900 + MPMX20_03762 0.57 -0.2 3,964,908 - MPMX20_03762 0.57 -1.8 3,964,925 + MPMX20_03762 0.58 -1.8 3,964,951 + MPMX20_03762 0.59 +0.6 3,965,018 + MPMX20_03762 0.61 -1.2 3,965,086 - MPMX20_03762 0.64 -1.8 3,965,096 - MPMX20_03762 0.64 -1.3 3,965,184 + MPMX20_03762 0.67 +1.6 3,965,184 + MPMX20_03762 0.67 -0.6 3,965,192 - MPMX20_03762 0.67 -1.8 3,965,192 - MPMX20_03762 0.67 +0.0 3,965,197 - MPMX20_03762 0.67 -0.6 3,965,223 - MPMX20_03762 0.68 -0.4 3,965,241 + MPMX20_03762 0.69 -2.5 3,965,249 - MPMX20_03762 0.69 -1.4 3,965,249 - MPMX20_03762 0.69 -2.3 3,965,303 - MPMX20_03762 0.71 -1.5 3,965,321 - MPMX20_03762 0.72 -1.2 3,965,331 - MPMX20_03762 0.72 -0.6 3,965,362 - MPMX20_03762 0.73 -0.3 3,965,492 + MPMX20_03762 0.78 -1.3 3,965,518 - MPMX20_03762 0.79 +1.0 3,965,550 - MPMX20_03762 0.80 -0.5 3,965,575 - MPMX20_03762 0.81 -1.3 3,965,586 - MPMX20_03762 0.81 -1.2 3,965,586 - MPMX20_03762 0.81 +1.6 3,965,695 - MPMX20_03762 0.85 +1.0 3,965,753 - MPMX20_03762 0.87 -1.0 3,965,755 - MPMX20_03762 0.87 +1.0 3,965,768 + MPMX20_03762 0.87 +0.7 3,965,768 + MPMX20_03762 0.87 -1.5 3,965,853 + -2.7 3,965,864 + -1.4 3,965,864 + -1.4 3,965,868 - -1.8 3,965,872 - -0.8 3,965,872 - +0.0 3,965,888 - -2.6 3,965,895 + +2.0 3,965,896 - -1.3 3,965,968 - -0.8 3,965,983 - +0.0 3,966,039 + +0.6 3,966,115 + +0.0 3,966,115 + -1.0 3,966,115 + -1.2 3,966,115 + -1.9 3,966,115 + -1.7 3,966,123 - -0.6 3,966,123 - -0.6 3,966,181 - -0.9 3,966,191 + -1.0 3,966,193 - +0.1 3,966,196 + -0.6 3,966,222 - -1.4 3,966,223 + -1.8 3,966,223 + -1.3 3,966,226 - -0.2 3,966,231 - +0.0 3,966,231 - -1.6 3,966,233 + -1.4 3,966,257 - -1.1 3,966,257 - -1.4 3,966,258 - -2.2 3,966,258 - +0.4 3,966,274 - -1.3 3,966,376 - MPMX20_03763 0.30 -1.5 3,966,378 + MPMX20_03763 0.31 -1.3 3,966,386 - MPMX20_03763 0.33 +0.4 3,966,386 - MPMX20_03763 0.33 -1.1 3,966,386 - MPMX20_03763 0.33 +1.0 3,966,394 - MPMX20_03763 0.35 -0.6 3,966,469 - MPMX20_03763 0.54 -0.8 3,966,486 - MPMX20_03763 0.58 -1.6 3,966,506 + MPMX20_03763 0.63 +0.3 3,966,572 + MPMX20_03763 0.80 +2.0 3,966,572 - MPMX20_03763 0.80 +1.0 3,966,580 - MPMX20_03763 0.82 -1.1 3,966,741 + -1.8 3,966,788 + MPMX20_03764 0.11 +0.0 3,966,899 - MPMX20_03764 0.21 -0.8 3,967,013 - MPMX20_03764 0.31 -2.1 3,967,072 - MPMX20_03764 0.37 +0.0 3,967,073 - MPMX20_03764 0.37 -1.4 3,967,126 + MPMX20_03764 0.41 -0.9
Or see this region's nucleotide sequence