Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03762

Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03760 and MPMX20_03761 are separated by 36 nucleotidesMPMX20_03761 and MPMX20_03762 are separated by 74 nucleotidesMPMX20_03762 and MPMX20_03763 are separated by 125 nucleotidesMPMX20_03763 and MPMX20_03764 are separated by 23 nucleotides MPMX20_03760: MPMX20_03760 - 6-phospho-beta-glucosidase BglA, at 3,960,972 to 3,962,405 _03760 MPMX20_03761: MPMX20_03761 - putative oxidoreductase YgfF, at 3,962,442 to 3,963,185 _03761 MPMX20_03762: MPMX20_03762 - Glycine dehydrogenase (decarboxylating), at 3,963,260 to 3,966,133 _03762 MPMX20_03763: MPMX20_03763 - Glycine cleavage system H protein, at 3,966,259 to 3,966,648 _03763 MPMX20_03764: MPMX20_03764 - Aminomethyltransferase, at 3,966,672 to 3,967,766 _03764 Position (kb) 3963 3964 3965 3966 3967Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3962.261 kb on + strand, within MPMX20_03760at 3962.266 kb on + strandat 3962.274 kb on - strandat 3962.279 kb on - strandat 3962.279 kb on - strandat 3962.364 kb on - strandat 3962.400 kb on + strandat 3962.571 kb on - strand, within MPMX20_03761at 3962.583 kb on + strand, within MPMX20_03761at 3962.632 kb on - strand, within MPMX20_03761at 3962.652 kb on + strand, within MPMX20_03761at 3962.652 kb on + strand, within MPMX20_03761at 3962.657 kb on - strand, within MPMX20_03761at 3962.704 kb on + strand, within MPMX20_03761at 3962.704 kb on + strand, within MPMX20_03761at 3962.797 kb on + strand, within MPMX20_03761at 3962.805 kb on - strand, within MPMX20_03761at 3962.837 kb on + strand, within MPMX20_03761at 3962.877 kb on - strand, within MPMX20_03761at 3962.877 kb on - strand, within MPMX20_03761at 3962.884 kb on + strand, within MPMX20_03761at 3962.884 kb on + strand, within MPMX20_03761at 3962.884 kb on + strand, within MPMX20_03761at 3962.892 kb on - strand, within MPMX20_03761at 3962.892 kb on - strand, within MPMX20_03761at 3962.892 kb on - strand, within MPMX20_03761at 3962.892 kb on - strand, within MPMX20_03761at 3962.892 kb on - strand, within MPMX20_03761at 3962.900 kb on - strand, within MPMX20_03761at 3962.926 kb on - strand, within MPMX20_03761at 3962.943 kb on + strand, within MPMX20_03761at 3962.990 kb on + strand, within MPMX20_03761at 3962.996 kb on - strand, within MPMX20_03761at 3963.073 kb on + strand, within MPMX20_03761at 3963.081 kb on - strand, within MPMX20_03761at 3963.105 kb on + strand, within MPMX20_03761at 3963.105 kb on + strand, within MPMX20_03761at 3963.106 kb on + strand, within MPMX20_03761at 3963.113 kb on - strandat 3963.171 kb on - strandat 3963.215 kb on + strandat 3963.216 kb on + strandat 3963.216 kb on + strandat 3963.216 kb on + strandat 3963.216 kb on + strandat 3963.224 kb on - strandat 3963.224 kb on - strandat 3963.226 kb on + strandat 3963.226 kb on + strandat 3963.226 kb on + strandat 3963.234 kb on - strandat 3963.234 kb on - strandat 3963.241 kb on + strandat 3963.288 kb on - strandat 3963.293 kb on + strandat 3963.301 kb on - strandat 3963.309 kb on + strandat 3963.309 kb on + strandat 3963.309 kb on + strandat 3963.317 kb on - strandat 3963.317 kb on - strandat 3963.317 kb on - strandat 3963.317 kb on - strandat 3963.317 kb on - strandat 3963.317 kb on - strandat 3963.317 kb on - strandat 3963.317 kb on - strandat 3963.328 kb on + strandat 3963.371 kb on - strandat 3963.379 kb on + strandat 3963.385 kb on + strandat 3963.392 kb on + strandat 3963.435 kb on + strandat 3963.443 kb on - strandat 3963.456 kb on + strandat 3963.629 kb on - strand, within MPMX20_03762at 3963.677 kb on + strand, within MPMX20_03762at 3963.720 kb on + strand, within MPMX20_03762at 3963.723 kb on - strand, within MPMX20_03762at 3963.728 kb on - strand, within MPMX20_03762at 3963.728 kb on - strand, within MPMX20_03762at 3963.794 kb on - strand, within MPMX20_03762at 3963.794 kb on - strand, within MPMX20_03762at 3963.802 kb on + strand, within MPMX20_03762at 3963.804 kb on - strand, within MPMX20_03762at 3963.847 kb on + strand, within MPMX20_03762at 3963.855 kb on - strand, within MPMX20_03762at 3963.855 kb on - strand, within MPMX20_03762at 3963.855 kb on - strand, within MPMX20_03762at 3963.870 kb on + strand, within MPMX20_03762at 3963.913 kb on + strand, within MPMX20_03762at 3963.913 kb on + strand, within MPMX20_03762at 3963.913 kb on + strand, within MPMX20_03762at 3963.928 kb on - strand, within MPMX20_03762at 3963.928 kb on - strand, within MPMX20_03762at 3964.016 kb on - strand, within MPMX20_03762at 3964.074 kb on + strand, within MPMX20_03762at 3964.103 kb on - strand, within MPMX20_03762at 3964.107 kb on + strand, within MPMX20_03762at 3964.133 kb on - strand, within MPMX20_03762at 3964.135 kb on + strand, within MPMX20_03762at 3964.135 kb on + strand, within MPMX20_03762at 3964.243 kb on - strand, within MPMX20_03762at 3964.511 kb on - strand, within MPMX20_03762at 3964.511 kb on - strand, within MPMX20_03762at 3964.511 kb on - strand, within MPMX20_03762at 3964.521 kb on - strand, within MPMX20_03762at 3964.581 kb on + strand, within MPMX20_03762at 3964.739 kb on + strand, within MPMX20_03762at 3964.747 kb on - strand, within MPMX20_03762at 3964.817 kb on - strand, within MPMX20_03762at 3964.828 kb on + strand, within MPMX20_03762at 3964.829 kb on + strand, within MPMX20_03762at 3964.866 kb on + strand, within MPMX20_03762at 3964.872 kb on - strand, within MPMX20_03762at 3964.872 kb on - strand, within MPMX20_03762at 3964.872 kb on - strand, within MPMX20_03762at 3964.872 kb on - strand, within MPMX20_03762at 3964.872 kb on - strand, within MPMX20_03762at 3964.872 kb on - strand, within MPMX20_03762at 3964.878 kb on + strand, within MPMX20_03762at 3964.900 kb on + strand, within MPMX20_03762at 3964.908 kb on - strand, within MPMX20_03762at 3964.925 kb on + strand, within MPMX20_03762at 3964.951 kb on + strand, within MPMX20_03762at 3965.018 kb on + strand, within MPMX20_03762at 3965.086 kb on - strand, within MPMX20_03762at 3965.096 kb on - strand, within MPMX20_03762at 3965.184 kb on + strand, within MPMX20_03762at 3965.184 kb on + strand, within MPMX20_03762at 3965.192 kb on - strand, within MPMX20_03762at 3965.192 kb on - strand, within MPMX20_03762at 3965.197 kb on - strand, within MPMX20_03762at 3965.223 kb on - strand, within MPMX20_03762at 3965.241 kb on + strand, within MPMX20_03762at 3965.249 kb on - strand, within MPMX20_03762at 3965.249 kb on - strand, within MPMX20_03762at 3965.303 kb on - strand, within MPMX20_03762at 3965.321 kb on - strand, within MPMX20_03762at 3965.331 kb on - strand, within MPMX20_03762at 3965.362 kb on - strand, within MPMX20_03762at 3965.492 kb on + strand, within MPMX20_03762at 3965.518 kb on - strand, within MPMX20_03762at 3965.550 kb on - strand, within MPMX20_03762at 3965.575 kb on - strand, within MPMX20_03762at 3965.586 kb on - strand, within MPMX20_03762at 3965.586 kb on - strand, within MPMX20_03762at 3965.695 kb on - strand, within MPMX20_03762at 3965.753 kb on - strand, within MPMX20_03762at 3965.755 kb on - strand, within MPMX20_03762at 3965.768 kb on + strand, within MPMX20_03762at 3965.768 kb on + strand, within MPMX20_03762at 3965.853 kb on + strandat 3965.864 kb on + strandat 3965.864 kb on + strandat 3965.868 kb on - strandat 3965.872 kb on - strandat 3965.872 kb on - strandat 3965.888 kb on - strandat 3965.895 kb on + strandat 3965.896 kb on - strandat 3965.968 kb on - strandat 3965.983 kb on - strandat 3966.039 kb on + strandat 3966.115 kb on + strandat 3966.115 kb on + strandat 3966.115 kb on + strandat 3966.115 kb on + strandat 3966.115 kb on + strandat 3966.123 kb on - strandat 3966.123 kb on - strandat 3966.181 kb on - strandat 3966.191 kb on + strandat 3966.193 kb on - strandat 3966.196 kb on + strandat 3966.222 kb on - strandat 3966.223 kb on + strandat 3966.223 kb on + strandat 3966.226 kb on - strandat 3966.231 kb on - strandat 3966.231 kb on - strandat 3966.233 kb on + strandat 3966.257 kb on - strandat 3966.257 kb on - strandat 3966.258 kb on - strandat 3966.258 kb on - strandat 3966.274 kb on - strandat 3966.376 kb on - strand, within MPMX20_03763at 3966.378 kb on + strand, within MPMX20_03763at 3966.386 kb on - strand, within MPMX20_03763at 3966.386 kb on - strand, within MPMX20_03763at 3966.386 kb on - strand, within MPMX20_03763at 3966.394 kb on - strand, within MPMX20_03763at 3966.469 kb on - strand, within MPMX20_03763at 3966.486 kb on - strand, within MPMX20_03763at 3966.506 kb on + strand, within MPMX20_03763at 3966.572 kb on + strand, within MPMX20_03763at 3966.572 kb on - strand, within MPMX20_03763at 3966.580 kb on - strand, within MPMX20_03763at 3966.741 kb on + strandat 3966.788 kb on + strand, within MPMX20_03764at 3966.899 kb on - strand, within MPMX20_03764at 3967.013 kb on - strand, within MPMX20_03764at 3967.072 kb on - strand, within MPMX20_03764at 3967.073 kb on - strand, within MPMX20_03764at 3967.126 kb on + strand, within MPMX20_03764

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar
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3,962,261 + MPMX20_03760 0.90 +0.3
3,962,266 + -0.9
3,962,274 - +0.2
3,962,279 - +0.6
3,962,279 - -0.1
3,962,364 - -0.1
3,962,400 + -0.8
3,962,571 - MPMX20_03761 0.17 +0.3
3,962,583 + MPMX20_03761 0.19 -0.6
3,962,632 - MPMX20_03761 0.26 +1.0
3,962,652 + MPMX20_03761 0.28 -1.3
3,962,652 + MPMX20_03761 0.28 +1.1
3,962,657 - MPMX20_03761 0.29 -0.6
3,962,704 + MPMX20_03761 0.35 +0.4
3,962,704 + MPMX20_03761 0.35 +0.2
3,962,797 + MPMX20_03761 0.48 +0.4
3,962,805 - MPMX20_03761 0.49 +0.8
3,962,837 + MPMX20_03761 0.53 -0.2
3,962,877 - MPMX20_03761 0.58 +1.0
3,962,877 - MPMX20_03761 0.58 -0.5
3,962,884 + MPMX20_03761 0.59 -0.4
3,962,884 + MPMX20_03761 0.59 +0.1
3,962,884 + MPMX20_03761 0.59 -0.2
3,962,892 - MPMX20_03761 0.60 +0.0
3,962,892 - MPMX20_03761 0.60 +0.7
3,962,892 - MPMX20_03761 0.60 +0.2
3,962,892 - MPMX20_03761 0.60 -0.2
3,962,892 - MPMX20_03761 0.60 -0.3
3,962,900 - MPMX20_03761 0.62 +0.3
3,962,926 - MPMX20_03761 0.65 +0.2
3,962,943 + MPMX20_03761 0.67 +0.1
3,962,990 + MPMX20_03761 0.74 +0.9
3,962,996 - MPMX20_03761 0.74 -0.6
3,963,073 + MPMX20_03761 0.85 +0.7
3,963,081 - MPMX20_03761 0.86 -0.3
3,963,105 + MPMX20_03761 0.89 -0.9
3,963,105 + MPMX20_03761 0.89 -1.0
3,963,106 + MPMX20_03761 0.89 +1.2
3,963,113 - -3.8
3,963,171 - -0.9
3,963,215 + +1.0
3,963,216 + -0.6
3,963,216 + -1.4
3,963,216 + -2.5
3,963,216 + +0.5
3,963,224 - +1.0
3,963,224 - -1.0
3,963,226 + -0.5
3,963,226 + +0.6
3,963,226 + +0.7
3,963,234 - -0.1
3,963,234 - -0.1
3,963,241 + -1.3
3,963,288 - +1.0
3,963,293 + +0.0
3,963,301 - +0.3
3,963,309 + -1.7
3,963,309 + +1.0
3,963,309 + -0.3
3,963,317 - -2.7
3,963,317 - -0.1
3,963,317 - -1.8
3,963,317 - -1.1
3,963,317 - +0.3
3,963,317 - -0.6
3,963,317 - -1.8
3,963,317 - -1.8
3,963,328 + +1.0
3,963,371 - -2.6
3,963,379 + -1.4
3,963,385 + -1.0
3,963,392 + -0.5
3,963,435 + -1.7
3,963,443 - +0.1
3,963,456 + -1.6
3,963,629 - MPMX20_03762 0.13 -2.1
3,963,677 + MPMX20_03762 0.15 -0.4
3,963,720 + MPMX20_03762 0.16 +0.3
3,963,723 - MPMX20_03762 0.16 -1.0
3,963,728 - MPMX20_03762 0.16 -2.0
3,963,728 - MPMX20_03762 0.16 -2.1
3,963,794 - MPMX20_03762 0.19 -1.0
3,963,794 - MPMX20_03762 0.19 +0.4
3,963,802 + MPMX20_03762 0.19 -0.7
3,963,804 - MPMX20_03762 0.19 +0.1
3,963,847 + MPMX20_03762 0.20 -2.0
3,963,855 - MPMX20_03762 0.21 -1.3
3,963,855 - MPMX20_03762 0.21 -0.2
3,963,855 - MPMX20_03762 0.21 -1.1
3,963,870 + MPMX20_03762 0.21 -0.5
3,963,913 + MPMX20_03762 0.23 -0.4
3,963,913 + MPMX20_03762 0.23 -0.7
3,963,913 + MPMX20_03762 0.23 -0.2
3,963,928 - MPMX20_03762 0.23 +0.0
3,963,928 - MPMX20_03762 0.23 -0.6
3,964,016 - MPMX20_03762 0.26 -2.3
3,964,074 + MPMX20_03762 0.28 -0.5
3,964,103 - MPMX20_03762 0.29 +1.0
3,964,107 + MPMX20_03762 0.29 -0.7
3,964,133 - MPMX20_03762 0.30 -0.5
3,964,135 + MPMX20_03762 0.30 +2.0
3,964,135 + MPMX20_03762 0.30 -0.3
3,964,243 - MPMX20_03762 0.34 -0.8
3,964,511 - MPMX20_03762 0.44 -3.5
3,964,511 - MPMX20_03762 0.44 -0.9
3,964,511 - MPMX20_03762 0.44 -2.4
3,964,521 - MPMX20_03762 0.44 -1.1
3,964,581 + MPMX20_03762 0.46 -1.0
3,964,739 + MPMX20_03762 0.51 +0.4
3,964,747 - MPMX20_03762 0.52 -1.1
3,964,817 - MPMX20_03762 0.54 -0.7
3,964,828 + MPMX20_03762 0.55 +0.4
3,964,829 + MPMX20_03762 0.55 -1.0
3,964,866 + MPMX20_03762 0.56 -1.1
3,964,872 - MPMX20_03762 0.56 +0.0
3,964,872 - MPMX20_03762 0.56 -1.5
3,964,872 - MPMX20_03762 0.56 -1.5
3,964,872 - MPMX20_03762 0.56 -1.7
3,964,872 - MPMX20_03762 0.56 -1.3
3,964,872 - MPMX20_03762 0.56 -1.0
3,964,878 + MPMX20_03762 0.56 -0.6
3,964,900 + MPMX20_03762 0.57 -0.2
3,964,908 - MPMX20_03762 0.57 -1.8
3,964,925 + MPMX20_03762 0.58 -1.8
3,964,951 + MPMX20_03762 0.59 +0.6
3,965,018 + MPMX20_03762 0.61 -1.2
3,965,086 - MPMX20_03762 0.64 -1.8
3,965,096 - MPMX20_03762 0.64 -1.3
3,965,184 + MPMX20_03762 0.67 +1.6
3,965,184 + MPMX20_03762 0.67 -0.6
3,965,192 - MPMX20_03762 0.67 -1.8
3,965,192 - MPMX20_03762 0.67 +0.0
3,965,197 - MPMX20_03762 0.67 -0.6
3,965,223 - MPMX20_03762 0.68 -0.4
3,965,241 + MPMX20_03762 0.69 -2.5
3,965,249 - MPMX20_03762 0.69 -1.4
3,965,249 - MPMX20_03762 0.69 -2.3
3,965,303 - MPMX20_03762 0.71 -1.5
3,965,321 - MPMX20_03762 0.72 -1.2
3,965,331 - MPMX20_03762 0.72 -0.6
3,965,362 - MPMX20_03762 0.73 -0.3
3,965,492 + MPMX20_03762 0.78 -1.3
3,965,518 - MPMX20_03762 0.79 +1.0
3,965,550 - MPMX20_03762 0.80 -0.5
3,965,575 - MPMX20_03762 0.81 -1.3
3,965,586 - MPMX20_03762 0.81 -1.2
3,965,586 - MPMX20_03762 0.81 +1.6
3,965,695 - MPMX20_03762 0.85 +1.0
3,965,753 - MPMX20_03762 0.87 -1.0
3,965,755 - MPMX20_03762 0.87 +1.0
3,965,768 + MPMX20_03762 0.87 +0.7
3,965,768 + MPMX20_03762 0.87 -1.5
3,965,853 + -2.7
3,965,864 + -1.4
3,965,864 + -1.4
3,965,868 - -1.8
3,965,872 - -0.8
3,965,872 - +0.0
3,965,888 - -2.6
3,965,895 + +2.0
3,965,896 - -1.3
3,965,968 - -0.8
3,965,983 - +0.0
3,966,039 + +0.6
3,966,115 + +0.0
3,966,115 + -1.0
3,966,115 + -1.2
3,966,115 + -1.9
3,966,115 + -1.7
3,966,123 - -0.6
3,966,123 - -0.6
3,966,181 - -0.9
3,966,191 + -1.0
3,966,193 - +0.1
3,966,196 + -0.6
3,966,222 - -1.4
3,966,223 + -1.8
3,966,223 + -1.3
3,966,226 - -0.2
3,966,231 - +0.0
3,966,231 - -1.6
3,966,233 + -1.4
3,966,257 - -1.1
3,966,257 - -1.4
3,966,258 - -2.2
3,966,258 - +0.4
3,966,274 - -1.3
3,966,376 - MPMX20_03763 0.30 -1.5
3,966,378 + MPMX20_03763 0.31 -1.3
3,966,386 - MPMX20_03763 0.33 +0.4
3,966,386 - MPMX20_03763 0.33 -1.1
3,966,386 - MPMX20_03763 0.33 +1.0
3,966,394 - MPMX20_03763 0.35 -0.6
3,966,469 - MPMX20_03763 0.54 -0.8
3,966,486 - MPMX20_03763 0.58 -1.6
3,966,506 + MPMX20_03763 0.63 +0.3
3,966,572 + MPMX20_03763 0.80 +2.0
3,966,572 - MPMX20_03763 0.80 +1.0
3,966,580 - MPMX20_03763 0.82 -1.1
3,966,741 + -1.8
3,966,788 + MPMX20_03764 0.11 +0.0
3,966,899 - MPMX20_03764 0.21 -0.8
3,967,013 - MPMX20_03764 0.31 -2.1
3,967,072 - MPMX20_03764 0.37 +0.0
3,967,073 - MPMX20_03764 0.37 -1.4
3,967,126 + MPMX20_03764 0.41 -0.9

Or see this region's nucleotide sequence