Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00895

Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00894 and MPMX20_00895 are separated by 74 nucleotidesMPMX20_00895 and MPMX20_00896 are separated by 52 nucleotides MPMX20_00894: MPMX20_00894 - hypothetical protein, at 942,801 to 943,625 _00894 MPMX20_00895: MPMX20_00895 - putative methyltransferase YcgJ, at 943,700 to 944,473 _00895 MPMX20_00896: MPMX20_00896 - Membrane-bound lytic murein transglycosylase D, at 944,526 to 945,890 _00896 Position (kb) 943 944 945Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 942.769 kb on + strandat 942.769 kb on + strandat 942.777 kb on - strandat 942.804 kb on - strandat 942.856 kb on - strandat 942.886 kb on - strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.933 kb on + strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.941 kb on - strand, within MPMX20_00894at 942.974 kb on - strand, within MPMX20_00894at 943.033 kb on + strand, within MPMX20_00894at 943.066 kb on + strand, within MPMX20_00894at 943.074 kb on - strand, within MPMX20_00894at 943.076 kb on + strand, within MPMX20_00894at 943.081 kb on + strand, within MPMX20_00894at 943.089 kb on - strand, within MPMX20_00894at 943.154 kb on + strand, within MPMX20_00894at 943.238 kb on + strand, within MPMX20_00894at 943.308 kb on - strand, within MPMX20_00894at 943.308 kb on - strand, within MPMX20_00894at 943.320 kb on - strand, within MPMX20_00894at 943.325 kb on - strand, within MPMX20_00894at 943.325 kb on - strand, within MPMX20_00894at 943.401 kb on + strand, within MPMX20_00894at 943.549 kb on + strandat 943.607 kb on + strandat 943.647 kb on + strandat 943.649 kb on - strandat 943.712 kb on - strandat 943.718 kb on + strandat 943.726 kb on - strandat 943.726 kb on - strandat 943.753 kb on + strandat 943.758 kb on + strandat 943.763 kb on + strandat 943.765 kb on + strandat 943.773 kb on + strandat 943.778 kb on + strand, within MPMX20_00895at 943.781 kb on - strand, within MPMX20_00895at 943.799 kb on - strand, within MPMX20_00895at 943.827 kb on - strand, within MPMX20_00895at 943.850 kb on + strand, within MPMX20_00895at 943.914 kb on - strand, within MPMX20_00895at 943.914 kb on - strand, within MPMX20_00895at 943.952 kb on - strand, within MPMX20_00895at 943.991 kb on + strand, within MPMX20_00895at 943.996 kb on + strand, within MPMX20_00895at 943.999 kb on - strand, within MPMX20_00895at 944.009 kb on + strand, within MPMX20_00895at 944.070 kb on + strand, within MPMX20_00895at 944.072 kb on + strand, within MPMX20_00895at 944.107 kb on - strand, within MPMX20_00895at 944.195 kb on - strand, within MPMX20_00895at 944.246 kb on + strand, within MPMX20_00895at 944.269 kb on + strand, within MPMX20_00895at 944.332 kb on - strand, within MPMX20_00895at 944.345 kb on + strand, within MPMX20_00895at 944.377 kb on - strand, within MPMX20_00895at 944.377 kb on - strand, within MPMX20_00895at 944.411 kb on - strandat 944.665 kb on + strand, within MPMX20_00896at 944.711 kb on - strand, within MPMX20_00896at 944.719 kb on - strand, within MPMX20_00896at 944.731 kb on + strand, within MPMX20_00896at 944.733 kb on - strand, within MPMX20_00896at 944.759 kb on + strand, within MPMX20_00896at 944.759 kb on + strand, within MPMX20_00896at 944.759 kb on + strand, within MPMX20_00896at 944.767 kb on - strand, within MPMX20_00896at 944.767 kb on - strand, within MPMX20_00896at 944.767 kb on - strand, within MPMX20_00896at 944.774 kb on + strand, within MPMX20_00896at 944.782 kb on - strand, within MPMX20_00896at 944.782 kb on - strand, within MPMX20_00896at 944.852 kb on + strand, within MPMX20_00896at 944.860 kb on - strand, within MPMX20_00896at 944.945 kb on + strand, within MPMX20_00896at 944.948 kb on - strand, within MPMX20_00896at 944.954 kb on - strand, within MPMX20_00896at 944.966 kb on + strand, within MPMX20_00896at 944.966 kb on + strand, within MPMX20_00896at 944.974 kb on - strand, within MPMX20_00896at 944.976 kb on - strand, within MPMX20_00896at 944.991 kb on - strand, within MPMX20_00896at 944.996 kb on + strand, within MPMX20_00896at 945.004 kb on - strand, within MPMX20_00896at 945.122 kb on - strand, within MPMX20_00896at 945.122 kb on - strand, within MPMX20_00896at 945.124 kb on + strand, within MPMX20_00896at 945.127 kb on + strand, within MPMX20_00896at 945.134 kb on + strand, within MPMX20_00896at 945.134 kb on + strand, within MPMX20_00896at 945.135 kb on - strand, within MPMX20_00896at 945.140 kb on - strand, within MPMX20_00896at 945.285 kb on + strand, within MPMX20_00896at 945.286 kb on - strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.303 kb on - strand, within MPMX20_00896at 945.303 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.409 kb on - strand, within MPMX20_00896

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar
remove
942,769 + -1.3
942,769 + +0.7
942,777 - -1.2
942,804 - +1.2
942,856 - -1.6
942,886 - MPMX20_00894 0.10 -0.6
942,933 + MPMX20_00894 0.16 -1.5
942,933 + MPMX20_00894 0.16 -0.5
942,933 + MPMX20_00894 0.16 -1.8
942,933 + MPMX20_00894 0.16 +0.1
942,933 + MPMX20_00894 0.16 +0.3
942,933 + MPMX20_00894 0.16 -1.3
942,933 + MPMX20_00894 0.16 -1.4
942,933 + MPMX20_00894 0.16 -0.7
942,933 + MPMX20_00894 0.16 -1.4
942,933 + MPMX20_00894 0.16 -2.1
942,933 + MPMX20_00894 0.16 -1.7
942,933 + MPMX20_00894 0.16 -2.4
942,933 + MPMX20_00894 0.16 -1.7
942,941 - MPMX20_00894 0.17 -2.1
942,941 - MPMX20_00894 0.17 +0.7
942,941 - MPMX20_00894 0.17 -0.2
942,941 - MPMX20_00894 0.17 +0.3
942,941 - MPMX20_00894 0.17 -2.4
942,941 - MPMX20_00894 0.17 -0.9
942,941 - MPMX20_00894 0.17 -0.6
942,941 - MPMX20_00894 0.17 -1.2
942,941 - MPMX20_00894 0.17 -0.1
942,941 - MPMX20_00894 0.17 -1.4
942,941 - MPMX20_00894 0.17 -0.7
942,941 - MPMX20_00894 0.17 -1.1
942,974 - MPMX20_00894 0.21 -1.2
943,033 + MPMX20_00894 0.28 -2.5
943,066 + MPMX20_00894 0.32 -2.4
943,074 - MPMX20_00894 0.33 -0.8
943,076 + MPMX20_00894 0.33 -2.6
943,081 + MPMX20_00894 0.34 -1.9
943,089 - MPMX20_00894 0.35 -0.5
943,154 + MPMX20_00894 0.43 -0.9
943,238 + MPMX20_00894 0.53 -1.6
943,308 - MPMX20_00894 0.61 +0.1
943,308 - MPMX20_00894 0.61 -0.5
943,320 - MPMX20_00894 0.63 -0.8
943,325 - MPMX20_00894 0.64 -1.2
943,325 - MPMX20_00894 0.64 -1.3
943,401 + MPMX20_00894 0.73 -2.6
943,549 + -0.9
943,607 + -0.4
943,647 + -0.3
943,649 - -1.1
943,712 - +0.5
943,718 + -0.4
943,726 - -0.0
943,726 - +0.5
943,753 + +0.9
943,758 + +0.1
943,763 + -1.3
943,765 + +0.3
943,773 + +0.2
943,778 + MPMX20_00895 0.10 +1.3
943,781 - MPMX20_00895 0.10 +0.5
943,799 - MPMX20_00895 0.13 -0.2
943,827 - MPMX20_00895 0.16 +0.8
943,850 + MPMX20_00895 0.19 +1.3
943,914 - MPMX20_00895 0.28 +0.3
943,914 - MPMX20_00895 0.28 -1.1
943,952 - MPMX20_00895 0.33 -0.8
943,991 + MPMX20_00895 0.38 -0.8
943,996 + MPMX20_00895 0.38 +1.3
943,999 - MPMX20_00895 0.39 -0.3
944,009 + MPMX20_00895 0.40 -0.3
944,070 + MPMX20_00895 0.48 -0.9
944,072 + MPMX20_00895 0.48 +2.5
944,107 - MPMX20_00895 0.53 +0.1
944,195 - MPMX20_00895 0.64 -0.2
944,246 + MPMX20_00895 0.71 +0.3
944,269 + MPMX20_00895 0.74 +0.6
944,332 - MPMX20_00895 0.82 -0.5
944,345 + MPMX20_00895 0.83 -0.2
944,377 - MPMX20_00895 0.87 -0.0
944,377 - MPMX20_00895 0.87 +0.9
944,411 - -0.1
944,665 + MPMX20_00896 0.10 +1.7
944,711 - MPMX20_00896 0.14 -1.3
944,719 - MPMX20_00896 0.14 -0.5
944,731 + MPMX20_00896 0.15 -0.5
944,733 - MPMX20_00896 0.15 -0.6
944,759 + MPMX20_00896 0.17 +0.3
944,759 + MPMX20_00896 0.17 +0.6
944,759 + MPMX20_00896 0.17 -0.3
944,767 - MPMX20_00896 0.18 +0.1
944,767 - MPMX20_00896 0.18 -1.7
944,767 - MPMX20_00896 0.18 -0.8
944,774 + MPMX20_00896 0.18 -1.5
944,782 - MPMX20_00896 0.19 -0.3
944,782 - MPMX20_00896 0.19 -1.5
944,852 + MPMX20_00896 0.24 -0.6
944,860 - MPMX20_00896 0.24 -1.0
944,945 + MPMX20_00896 0.31 -1.3
944,948 - MPMX20_00896 0.31 -0.3
944,954 - MPMX20_00896 0.31 -1.3
944,966 + MPMX20_00896 0.32 +1.3
944,966 + MPMX20_00896 0.32 +0.4
944,974 - MPMX20_00896 0.33 -4.2
944,976 - MPMX20_00896 0.33 -0.6
944,991 - MPMX20_00896 0.34 +0.1
944,996 + MPMX20_00896 0.34 -0.5
945,004 - MPMX20_00896 0.35 -0.4
945,122 - MPMX20_00896 0.44 -1.7
945,122 - MPMX20_00896 0.44 +0.2
945,124 + MPMX20_00896 0.44 +0.2
945,127 + MPMX20_00896 0.44 -1.1
945,134 + MPMX20_00896 0.45 -0.2
945,134 + MPMX20_00896 0.45 +1.7
945,135 - MPMX20_00896 0.45 -2.2
945,140 - MPMX20_00896 0.45 -1.3
945,285 + MPMX20_00896 0.56 +0.2
945,286 - MPMX20_00896 0.56 -0.2
945,297 + MPMX20_00896 0.56 -1.1
945,297 + MPMX20_00896 0.56 -0.0
945,297 + MPMX20_00896 0.56 -0.7
945,297 + MPMX20_00896 0.56 -1.5
945,297 + MPMX20_00896 0.56 -2.0
945,297 + MPMX20_00896 0.56 -0.5
945,297 + MPMX20_00896 0.56 +0.5
945,297 + MPMX20_00896 0.56 +0.3
945,297 + MPMX20_00896 0.56 -1.0
945,297 + MPMX20_00896 0.56 +0.5
945,297 + MPMX20_00896 0.56 -2.4
945,297 + MPMX20_00896 0.56 -0.4
945,303 - MPMX20_00896 0.57 -1.5
945,303 - MPMX20_00896 0.57 -1.9
945,305 - MPMX20_00896 0.57 -0.3
945,305 - MPMX20_00896 0.57 -0.9
945,305 - MPMX20_00896 0.57 -0.6
945,305 - MPMX20_00896 0.57 +0.2
945,305 - MPMX20_00896 0.57 +0.1
945,305 - MPMX20_00896 0.57 +1.7
945,305 - MPMX20_00896 0.57 -1.1
945,305 - MPMX20_00896 0.57 +1.1
945,305 - MPMX20_00896 0.57 +2.7
945,305 - MPMX20_00896 0.57 -0.6
945,305 - MPMX20_00896 0.57 -0.8
945,305 - MPMX20_00896 0.57 -2.7
945,305 - MPMX20_00896 0.57 -1.6
945,409 - MPMX20_00896 0.65 -0.7

Or see this region's nucleotide sequence