Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04135

Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04133 and MPMX20_04134 are separated by 312 nucleotidesMPMX20_04134 and MPMX20_04135 are separated by 15 nucleotidesMPMX20_04135 and MPMX20_04136 are separated by 289 nucleotides MPMX20_04133: MPMX20_04133 - Stringent starvation protein A, at 4,333,890 to 4,334,528 _04133 MPMX20_04134: MPMX20_04134 - 30S ribosomal protein S9, at 4,334,841 to 4,335,233 _04134 MPMX20_04135: MPMX20_04135 - 50S ribosomal protein L13, at 4,335,249 to 4,335,677 _04135 MPMX20_04136: MPMX20_04136 - Cell division protein ZapE, at 4,335,967 to 4,337,091 _04136 Position (kb) 4335 4336Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4334.268 kb on - strand, within MPMX20_04133at 4334.296 kb on - strand, within MPMX20_04133at 4334.363 kb on - strand, within MPMX20_04133at 4334.449 kb on + strand, within MPMX20_04133at 4334.457 kb on - strand, within MPMX20_04133at 4334.457 kb on - strand, within MPMX20_04133at 4334.575 kb on - strandat 4334.585 kb on - strandat 4334.699 kb on + strandat 4334.699 kb on + strandat 4334.699 kb on + strandat 4334.707 kb on - strandat 4334.707 kb on - strandat 4335.926 kb on + strandat 4335.931 kb on + strandat 4335.938 kb on + strandat 4335.950 kb on - strandat 4335.960 kb on - strandat 4335.960 kb on - strandat 4335.984 kb on + strandat 4335.984 kb on + strandat 4336.058 kb on + strandat 4336.058 kb on + strandat 4336.058 kb on + strandat 4336.058 kb on + strandat 4336.066 kb on - strandat 4336.066 kb on - strandat 4336.066 kb on - strandat 4336.066 kb on - strandat 4336.066 kb on - strandat 4336.066 kb on - strandat 4336.066 kb on - strandat 4336.072 kb on + strandat 4336.101 kb on + strand, within MPMX20_04136at 4336.165 kb on - strand, within MPMX20_04136at 4336.167 kb on - strand, within MPMX20_04136at 4336.192 kb on - strand, within MPMX20_04136at 4336.194 kb on + strand, within MPMX20_04136at 4336.248 kb on + strand, within MPMX20_04136at 4336.248 kb on + strand, within MPMX20_04136at 4336.256 kb on - strand, within MPMX20_04136at 4336.271 kb on - strand, within MPMX20_04136at 4336.298 kb on + strand, within MPMX20_04136at 4336.304 kb on - strand, within MPMX20_04136at 4336.320 kb on + strand, within MPMX20_04136at 4336.333 kb on - strand, within MPMX20_04136at 4336.404 kb on + strand, within MPMX20_04136at 4336.494 kb on + strand, within MPMX20_04136at 4336.531 kb on + strand, within MPMX20_04136at 4336.539 kb on - strand, within MPMX20_04136at 4336.539 kb on - strand, within MPMX20_04136at 4336.539 kb on - strand, within MPMX20_04136at 4336.539 kb on - strand, within MPMX20_04136at 4336.584 kb on + strand, within MPMX20_04136at 4336.584 kb on + strand, within MPMX20_04136at 4336.584 kb on + strand, within MPMX20_04136at 4336.584 kb on + strand, within MPMX20_04136at 4336.584 kb on + strand, within MPMX20_04136at 4336.586 kb on - strand, within MPMX20_04136at 4336.592 kb on - strand, within MPMX20_04136at 4336.607 kb on + strand, within MPMX20_04136at 4336.607 kb on + strand, within MPMX20_04136at 4336.615 kb on - strand, within MPMX20_04136at 4336.672 kb on + strand, within MPMX20_04136

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar
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4,334,268 - MPMX20_04133 0.59 -1.4
4,334,296 - MPMX20_04133 0.64 -1.6
4,334,363 - MPMX20_04133 0.74 -1.0
4,334,449 + MPMX20_04133 0.87 -2.6
4,334,457 - MPMX20_04133 0.89 -4.1
4,334,457 - MPMX20_04133 0.89 -0.0
4,334,575 - -0.8
4,334,585 - -2.1
4,334,699 + +1.3
4,334,699 + -1.6
4,334,699 + -0.3
4,334,707 - -0.0
4,334,707 - -0.0
4,335,926 + -0.2
4,335,931 + -0.2
4,335,938 + -2.1
4,335,950 - -0.0
4,335,960 - +1.6
4,335,960 - +2.0
4,335,984 + +1.0
4,335,984 + -1.6
4,336,058 + +0.8
4,336,058 + -1.6
4,336,058 + -1.2
4,336,058 + -2.8
4,336,066 - -1.4
4,336,066 - -1.5
4,336,066 - -1.4
4,336,066 - -0.8
4,336,066 - -0.4
4,336,066 - -1.2
4,336,066 - -1.0
4,336,072 + -1.4
4,336,101 + MPMX20_04136 0.12 -0.0
4,336,165 - MPMX20_04136 0.18 -1.1
4,336,167 - MPMX20_04136 0.18 -0.2
4,336,192 - MPMX20_04136 0.20 +0.4
4,336,194 + MPMX20_04136 0.20 -2.3
4,336,248 + MPMX20_04136 0.25 -1.5
4,336,248 + MPMX20_04136 0.25 -0.5
4,336,256 - MPMX20_04136 0.26 +1.6
4,336,271 - MPMX20_04136 0.27 -1.0
4,336,298 + MPMX20_04136 0.29 -1.0
4,336,304 - MPMX20_04136 0.30 -1.1
4,336,320 + MPMX20_04136 0.31 -0.9
4,336,333 - MPMX20_04136 0.33 -1.2
4,336,404 + MPMX20_04136 0.39 +2.6
4,336,494 + MPMX20_04136 0.47 -0.5
4,336,531 + MPMX20_04136 0.50 -1.5
4,336,539 - MPMX20_04136 0.51 -1.2
4,336,539 - MPMX20_04136 0.51 -0.8
4,336,539 - MPMX20_04136 0.51 -1.2
4,336,539 - MPMX20_04136 0.51 -0.1
4,336,584 + MPMX20_04136 0.55 -0.0
4,336,584 + MPMX20_04136 0.55 -0.2
4,336,584 + MPMX20_04136 0.55 -2.5
4,336,584 + MPMX20_04136 0.55 -2.4
4,336,584 + MPMX20_04136 0.55 -1.0
4,336,586 - MPMX20_04136 0.55 -1.5
4,336,592 - MPMX20_04136 0.56 -1.2
4,336,607 + MPMX20_04136 0.57 -0.6
4,336,607 + MPMX20_04136 0.57 -0.6
4,336,615 - MPMX20_04136 0.58 -0.9
4,336,672 + MPMX20_04136 0.63 -0.8

Or see this region's nucleotide sequence