Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04101 and MPMX20_04102 are separated by 231 nucleotides MPMX20_04102 and MPMX20_04103 are separated by 13 nucleotides
MPMX20_04101: MPMX20_04101 - Intermembrane phospholipid transport system ATP-binding protein MlaF, at 4,295,370 to 4,296,182
_04101
MPMX20_04102: MPMX20_04102 - Inner membrane protein YrbG, at 4,296,414 to 4,297,391
_04102
MPMX20_04103: MPMX20_04103 - Arabinose 5-phosphate isomerase KdsD, at 4,297,405 to 4,298,391
_04103
Position (kb)
4296
4297
4298 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4295.426 kb on + strand at 4295.426 kb on + strand at 4295.434 kb on - strand at 4295.434 kb on - strand at 4295.434 kb on - strand at 4295.457 kb on + strand, within MPMX20_04101 at 4295.527 kb on + strand, within MPMX20_04101 at 4295.615 kb on + strand, within MPMX20_04101 at 4295.615 kb on + strand, within MPMX20_04101 at 4295.623 kb on - strand, within MPMX20_04101 at 4295.626 kb on + strand, within MPMX20_04101 at 4295.626 kb on + strand, within MPMX20_04101 at 4295.626 kb on + strand, within MPMX20_04101 at 4295.634 kb on - strand, within MPMX20_04101 at 4295.654 kb on + strand, within MPMX20_04101 at 4295.655 kb on + strand, within MPMX20_04101 at 4295.750 kb on + strand, within MPMX20_04101 at 4295.758 kb on - strand, within MPMX20_04101 at 4295.799 kb on - strand, within MPMX20_04101 at 4295.892 kb on + strand, within MPMX20_04101 at 4295.919 kb on + strand, within MPMX20_04101 at 4295.936 kb on + strand, within MPMX20_04101 at 4295.936 kb on + strand, within MPMX20_04101 at 4295.938 kb on + strand, within MPMX20_04101 at 4295.940 kb on + strand, within MPMX20_04101 at 4295.944 kb on - strand, within MPMX20_04101 at 4295.946 kb on - strand, within MPMX20_04101 at 4296.070 kb on + strand, within MPMX20_04101 at 4296.188 kb on + strand at 4296.222 kb on + strand at 4296.232 kb on + strand at 4296.232 kb on + strand at 4296.240 kb on - strand at 4296.337 kb on + strand at 4296.337 kb on + strand at 4296.337 kb on + strand at 4296.338 kb on + strand at 4296.345 kb on - strand at 4296.345 kb on - strand at 4296.347 kb on + strand at 4296.349 kb on + strand at 4296.349 kb on + strand at 4296.352 kb on - strand at 4296.352 kb on - strand at 4296.371 kb on - strand at 4296.458 kb on + strand at 4296.458 kb on + strand at 4296.461 kb on + strand at 4296.461 kb on + strand at 4296.469 kb on - strand at 4296.469 kb on - strand at 4296.469 kb on - strand at 4296.469 kb on - strand at 4296.490 kb on + strand at 4296.490 kb on + strand at 4296.498 kb on - strand at 4296.503 kb on - strand at 4296.519 kb on - strand, within MPMX20_04102 at 4296.540 kb on + strand, within MPMX20_04102 at 4296.543 kb on - strand, within MPMX20_04102 at 4296.614 kb on - strand, within MPMX20_04102 at 4296.636 kb on + strand, within MPMX20_04102 at 4296.656 kb on - strand, within MPMX20_04102 at 4296.664 kb on + strand, within MPMX20_04102 at 4296.671 kb on - strand, within MPMX20_04102 at 4296.672 kb on - strand, within MPMX20_04102 at 4296.686 kb on - strand, within MPMX20_04102 at 4296.750 kb on - strand, within MPMX20_04102 at 4296.757 kb on - strand, within MPMX20_04102 at 4296.793 kb on - strand, within MPMX20_04102 at 4296.881 kb on - strand, within MPMX20_04102 at 4296.881 kb on - strand, within MPMX20_04102 at 4297.008 kb on - strand, within MPMX20_04102 at 4297.050 kb on - strand, within MPMX20_04102 at 4297.088 kb on + strand, within MPMX20_04102 at 4297.144 kb on - strand, within MPMX20_04102 at 4297.184 kb on - strand, within MPMX20_04102 at 4297.185 kb on - strand, within MPMX20_04102 at 4297.196 kb on + strand, within MPMX20_04102 at 4297.204 kb on - strand, within MPMX20_04102 at 4297.218 kb on + strand, within MPMX20_04102 at 4297.277 kb on + strand, within MPMX20_04102 at 4297.312 kb on + strand at 4297.323 kb on + strand at 4297.356 kb on + strand at 4297.361 kb on + strand at 4297.369 kb on - strand at 4297.385 kb on - strand at 4297.467 kb on - strand at 4297.474 kb on + strand at 4297.480 kb on + strand at 4297.488 kb on - strand at 4297.490 kb on + strand at 4297.498 kb on - strand at 4297.580 kb on + strand, within MPMX20_04103 at 4297.580 kb on + strand, within MPMX20_04103 at 4297.713 kb on + strand, within MPMX20_04103 at 4297.713 kb on + strand, within MPMX20_04103 at 4297.749 kb on + strand, within MPMX20_04103 at 4297.829 kb on + strand, within MPMX20_04103 at 4297.841 kb on + strand, within MPMX20_04103 at 4297.855 kb on + strand, within MPMX20_04103 at 4297.908 kb on + strand, within MPMX20_04103 at 4297.916 kb on - strand, within MPMX20_04103 at 4297.916 kb on - strand, within MPMX20_04103 at 4297.952 kb on + strand, within MPMX20_04103 at 4298.008 kb on - strand, within MPMX20_04103 at 4298.014 kb on - strand, within MPMX20_04103 at 4298.019 kb on + strand, within MPMX20_04103 at 4298.037 kb on - strand, within MPMX20_04103 at 4298.039 kb on + strand, within MPMX20_04103 at 4298.049 kb on - strand, within MPMX20_04103 at 4298.198 kb on + strand, within MPMX20_04103 at 4298.198 kb on + strand, within MPMX20_04103 at 4298.217 kb on + strand, within MPMX20_04103 at 4298.217 kb on + strand, within MPMX20_04103 at 4298.245 kb on - strand, within MPMX20_04103 at 4298.262 kb on + strand, within MPMX20_04103 at 4298.320 kb on - strand at 4298.348 kb on + strand at 4298.380 kb on + strand at 4298.380 kb on + strand at 4298.380 kb on + strand at 4298.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar remove 4,295,426 + -1.5 4,295,426 + -1.2 4,295,434 - -2.8 4,295,434 - -0.6 4,295,434 - +0.5 4,295,457 + MPMX20_04101 0.11 +0.6 4,295,527 + MPMX20_04101 0.19 -1.3 4,295,615 + MPMX20_04101 0.30 -0.2 4,295,615 + MPMX20_04101 0.30 -0.2 4,295,623 - MPMX20_04101 0.31 +0.3 4,295,626 + MPMX20_04101 0.31 +0.5 4,295,626 + MPMX20_04101 0.31 -2.3 4,295,626 + MPMX20_04101 0.31 -1.8 4,295,634 - MPMX20_04101 0.32 -0.8 4,295,654 + MPMX20_04101 0.35 -0.9 4,295,655 + MPMX20_04101 0.35 +1.0 4,295,750 + MPMX20_04101 0.47 -0.7 4,295,758 - MPMX20_04101 0.48 -1.5 4,295,799 - MPMX20_04101 0.53 -0.0 4,295,892 + MPMX20_04101 0.64 -1.9 4,295,919 + MPMX20_04101 0.68 -0.4 4,295,936 + MPMX20_04101 0.70 -0.9 4,295,936 + MPMX20_04101 0.70 -0.7 4,295,938 + MPMX20_04101 0.70 -3.1 4,295,940 + MPMX20_04101 0.70 -0.5 4,295,944 - MPMX20_04101 0.71 -2.2 4,295,946 - MPMX20_04101 0.71 -0.8 4,296,070 + MPMX20_04101 0.86 +1.0 4,296,188 + -1.0 4,296,222 + +0.7 4,296,232 + -0.9 4,296,232 + -1.5 4,296,240 - -0.2 4,296,337 + -0.3 4,296,337 + -2.0 4,296,337 + -0.5 4,296,338 + -0.8 4,296,345 - -0.0 4,296,345 - +0.0 4,296,347 + -2.2 4,296,349 + -1.1 4,296,349 + -0.2 4,296,352 - -0.3 4,296,352 - -1.0 4,296,371 - -0.0 4,296,458 + -0.2 4,296,458 + -0.0 4,296,461 + -0.2 4,296,461 + -0.6 4,296,469 - -0.5 4,296,469 - -1.6 4,296,469 - -2.7 4,296,469 - -0.0 4,296,490 + -1.0 4,296,490 + +1.5 4,296,498 - -0.0 4,296,503 - +0.2 4,296,519 - MPMX20_04102 0.11 -1.7 4,296,540 + MPMX20_04102 0.13 +1.5 4,296,543 - MPMX20_04102 0.13 -0.6 4,296,614 - MPMX20_04102 0.20 -0.5 4,296,636 + MPMX20_04102 0.23 +0.5 4,296,656 - MPMX20_04102 0.25 +1.5 4,296,664 + MPMX20_04102 0.26 -0.8 4,296,671 - MPMX20_04102 0.26 -1.0 4,296,672 - MPMX20_04102 0.26 -0.9 4,296,686 - MPMX20_04102 0.28 +0.3 4,296,750 - MPMX20_04102 0.34 +0.5 4,296,757 - MPMX20_04102 0.35 +1.5 4,296,793 - MPMX20_04102 0.39 -0.5 4,296,881 - MPMX20_04102 0.48 -1.4 4,296,881 - MPMX20_04102 0.48 -1.5 4,297,008 - MPMX20_04102 0.61 -0.8 4,297,050 - MPMX20_04102 0.65 -0.6 4,297,088 + MPMX20_04102 0.69 -1.8 4,297,144 - MPMX20_04102 0.75 -2.1 4,297,184 - MPMX20_04102 0.79 +0.1 4,297,185 - MPMX20_04102 0.79 +1.4 4,297,196 + MPMX20_04102 0.80 -0.8 4,297,204 - MPMX20_04102 0.81 -0.0 4,297,218 + MPMX20_04102 0.82 -1.0 4,297,277 + MPMX20_04102 0.88 -2.7 4,297,312 + -0.9 4,297,323 + +0.2 4,297,356 + +1.0 4,297,361 + -0.1 4,297,369 - -1.8 4,297,385 - -1.5 4,297,467 - -2.5 4,297,474 + -0.0 4,297,480 + -0.5 4,297,488 - -1.0 4,297,490 + -1.5 4,297,498 - -1.3 4,297,580 + MPMX20_04103 0.18 -0.8 4,297,580 + MPMX20_04103 0.18 -1.5 4,297,713 + MPMX20_04103 0.31 +1.2 4,297,713 + MPMX20_04103 0.31 -0.7 4,297,749 + MPMX20_04103 0.35 +0.5 4,297,829 + MPMX20_04103 0.43 -0.8 4,297,841 + MPMX20_04103 0.44 +2.5 4,297,855 + MPMX20_04103 0.46 -0.0 4,297,908 + MPMX20_04103 0.51 -1.8 4,297,916 - MPMX20_04103 0.52 -1.8 4,297,916 - MPMX20_04103 0.52 -0.8 4,297,952 + MPMX20_04103 0.55 +0.1 4,298,008 - MPMX20_04103 0.61 +0.5 4,298,014 - MPMX20_04103 0.62 -1.2 4,298,019 + MPMX20_04103 0.62 +0.1 4,298,037 - MPMX20_04103 0.64 -1.3 4,298,039 + MPMX20_04103 0.64 -0.0 4,298,049 - MPMX20_04103 0.65 -0.0 4,298,198 + MPMX20_04103 0.80 -0.8 4,298,198 + MPMX20_04103 0.80 -2.0 4,298,217 + MPMX20_04103 0.82 +0.1 4,298,217 + MPMX20_04103 0.82 -0.8 4,298,245 - MPMX20_04103 0.85 -2.7 4,298,262 + MPMX20_04103 0.87 +0.8 4,298,320 - -1.0 4,298,348 + +0.4 4,298,380 + +0.2 4,298,380 + -0.8 4,298,380 + -0.3 4,298,386 + -0.0
Or see this region's nucleotide sequence