Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03977 and MPMX20_03978 are separated by 0 nucleotides MPMX20_03978 and MPMX20_03979 are separated by 146 nucleotides MPMX20_03979 and MPMX20_03980 overlap by 4 nucleotides
MPMX20_03977: MPMX20_03977 - hypothetical protein, at 4,171,178 to 4,172,347
_03977
MPMX20_03978: MPMX20_03978 - NADPH-dependent ferric-chelate reductase, at 4,172,348 to 4,173,112
_03978
MPMX20_03979: MPMX20_03979 - Transcriptional regulator YqjI, at 4,173,259 to 4,173,753
_03979
MPMX20_03980: MPMX20_03980 - hypothetical protein, at 4,173,750 to 4,175,309
_03980
Position (kb)
4172
4173
4174 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4171.484 kb on - strand, within MPMX20_03977 at 4171.519 kb on + strand, within MPMX20_03977 at 4171.540 kb on + strand, within MPMX20_03977 at 4171.591 kb on + strand, within MPMX20_03977 at 4171.675 kb on - strand, within MPMX20_03977 at 4171.793 kb on + strand, within MPMX20_03977 at 4171.910 kb on - strand, within MPMX20_03977 at 4171.922 kb on + strand, within MPMX20_03977 at 4171.955 kb on - strand, within MPMX20_03977 at 4171.966 kb on - strand, within MPMX20_03977 at 4171.970 kb on + strand, within MPMX20_03977 at 4171.971 kb on + strand, within MPMX20_03977 at 4172.053 kb on + strand, within MPMX20_03977 at 4172.089 kb on + strand, within MPMX20_03977 at 4172.094 kb on + strand, within MPMX20_03977 at 4172.173 kb on + strand, within MPMX20_03977 at 4172.173 kb on + strand, within MPMX20_03977 at 4172.218 kb on + strand, within MPMX20_03977 at 4172.238 kb on - strand at 4172.309 kb on + strand at 4172.327 kb on + strand at 4172.335 kb on - strand at 4172.504 kb on - strand, within MPMX20_03978 at 4172.537 kb on - strand, within MPMX20_03978 at 4172.567 kb on + strand, within MPMX20_03978 at 4172.597 kb on - strand, within MPMX20_03978 at 4172.687 kb on + strand, within MPMX20_03978 at 4172.689 kb on - strand, within MPMX20_03978 at 4172.690 kb on - strand, within MPMX20_03978 at 4172.765 kb on - strand, within MPMX20_03978 at 4172.821 kb on + strand, within MPMX20_03978 at 4172.840 kb on + strand, within MPMX20_03978 at 4172.840 kb on + strand, within MPMX20_03978 at 4172.840 kb on + strand, within MPMX20_03978 at 4172.847 kb on + strand, within MPMX20_03978 at 4172.847 kb on + strand, within MPMX20_03978 at 4172.847 kb on + strand, within MPMX20_03978 at 4172.847 kb on + strand, within MPMX20_03978 at 4172.848 kb on - strand, within MPMX20_03978 at 4172.855 kb on - strand, within MPMX20_03978 at 4172.855 kb on - strand, within MPMX20_03978 at 4172.917 kb on + strand, within MPMX20_03978 at 4172.922 kb on - strand, within MPMX20_03978 at 4173.027 kb on + strand, within MPMX20_03978 at 4173.091 kb on - strand at 4173.094 kb on + strand at 4173.114 kb on + strand at 4173.116 kb on - strand at 4173.121 kb on - strand at 4173.372 kb on + strand, within MPMX20_03979 at 4173.382 kb on + strand, within MPMX20_03979 at 4173.410 kb on + strand, within MPMX20_03979 at 4173.416 kb on + strand, within MPMX20_03979 at 4173.424 kb on - strand, within MPMX20_03979 at 4173.424 kb on - strand, within MPMX20_03979 at 4173.453 kb on + strand, within MPMX20_03979 at 4173.454 kb on + strand, within MPMX20_03979 at 4173.461 kb on - strand, within MPMX20_03979 at 4173.462 kb on - strand, within MPMX20_03979 at 4173.525 kb on + strand, within MPMX20_03979 at 4173.525 kb on + strand, within MPMX20_03979 at 4173.593 kb on + strand, within MPMX20_03979 at 4173.639 kb on + strand, within MPMX20_03979 at 4173.647 kb on - strand, within MPMX20_03979 at 4173.647 kb on - strand, within MPMX20_03979 at 4173.649 kb on + strand, within MPMX20_03979 at 4173.700 kb on - strand, within MPMX20_03979 at 4173.710 kb on - strand at 4173.727 kb on + strand at 4173.727 kb on + strand at 4173.727 kb on + strand at 4173.727 kb on + strand at 4173.735 kb on - strand at 4173.747 kb on + strand at 4173.755 kb on - strand at 4173.756 kb on - strand at 4173.766 kb on - strand at 4173.801 kb on + strand at 4173.801 kb on - strand at 4173.851 kb on - strand at 4173.874 kb on - strand at 4173.926 kb on + strand, within MPMX20_03980 at 4173.926 kb on + strand, within MPMX20_03980 at 4173.926 kb on + strand, within MPMX20_03980 at 4173.934 kb on - strand, within MPMX20_03980 at 4173.934 kb on - strand, within MPMX20_03980 at 4173.944 kb on - strand, within MPMX20_03980 at 4173.974 kb on - strand, within MPMX20_03980 at 4173.994 kb on - strand, within MPMX20_03980 at 4174.022 kb on + strand, within MPMX20_03980 at 4174.022 kb on + strand, within MPMX20_03980 at 4174.022 kb on + strand, within MPMX20_03980 at 4174.022 kb on + strand, within MPMX20_03980 at 4174.030 kb on - strand, within MPMX20_03980 at 4174.035 kb on - strand, within MPMX20_03980 at 4174.088 kb on - strand, within MPMX20_03980 at 4174.090 kb on + strand, within MPMX20_03980 at 4174.103 kb on - strand, within MPMX20_03980
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar remove 4,171,484 - MPMX20_03977 0.26 -0.8 4,171,519 + MPMX20_03977 0.29 -0.0 4,171,540 + MPMX20_03977 0.31 +0.3 4,171,591 + MPMX20_03977 0.35 +0.8 4,171,675 - MPMX20_03977 0.42 -0.2 4,171,793 + MPMX20_03977 0.53 -0.6 4,171,910 - MPMX20_03977 0.63 -0.9 4,171,922 + MPMX20_03977 0.64 -0.9 4,171,955 - MPMX20_03977 0.66 +0.2 4,171,966 - MPMX20_03977 0.67 +0.6 4,171,970 + MPMX20_03977 0.68 -0.7 4,171,971 + MPMX20_03977 0.68 +0.2 4,172,053 + MPMX20_03977 0.75 -2.6 4,172,089 + MPMX20_03977 0.78 -0.3 4,172,094 + MPMX20_03977 0.78 -1.6 4,172,173 + MPMX20_03977 0.85 -1.0 4,172,173 + MPMX20_03977 0.85 +0.0 4,172,218 + MPMX20_03977 0.89 +0.5 4,172,238 - -0.6 4,172,309 + -0.5 4,172,327 + -0.9 4,172,335 - -0.2 4,172,504 - MPMX20_03978 0.20 +1.0 4,172,537 - MPMX20_03978 0.25 +0.4 4,172,567 + MPMX20_03978 0.29 +1.3 4,172,597 - MPMX20_03978 0.33 +1.0 4,172,687 + MPMX20_03978 0.44 -1.4 4,172,689 - MPMX20_03978 0.45 +0.5 4,172,690 - MPMX20_03978 0.45 -0.2 4,172,765 - MPMX20_03978 0.55 -0.3 4,172,821 + MPMX20_03978 0.62 -1.8 4,172,840 + MPMX20_03978 0.64 +1.2 4,172,840 + MPMX20_03978 0.64 +0.3 4,172,840 + MPMX20_03978 0.64 -0.6 4,172,847 + MPMX20_03978 0.65 -0.5 4,172,847 + MPMX20_03978 0.65 -0.5 4,172,847 + MPMX20_03978 0.65 -0.0 4,172,847 + MPMX20_03978 0.65 -0.1 4,172,848 - MPMX20_03978 0.65 +0.3 4,172,855 - MPMX20_03978 0.66 -0.7 4,172,855 - MPMX20_03978 0.66 -2.4 4,172,917 + MPMX20_03978 0.74 +0.4 4,172,922 - MPMX20_03978 0.75 -1.6 4,173,027 + MPMX20_03978 0.89 +1.5 4,173,091 - -0.2 4,173,094 + -0.6 4,173,114 + +0.8 4,173,116 - -1.6 4,173,121 - +1.1 4,173,372 + MPMX20_03979 0.23 -0.3 4,173,382 + MPMX20_03979 0.25 -0.0 4,173,410 + MPMX20_03979 0.31 +1.9 4,173,416 + MPMX20_03979 0.32 -0.2 4,173,424 - MPMX20_03979 0.33 +0.7 4,173,424 - MPMX20_03979 0.33 -2.2 4,173,453 + MPMX20_03979 0.39 +0.1 4,173,454 + MPMX20_03979 0.39 +0.1 4,173,461 - MPMX20_03979 0.41 +0.2 4,173,462 - MPMX20_03979 0.41 -1.0 4,173,525 + MPMX20_03979 0.54 -0.0 4,173,525 + MPMX20_03979 0.54 +0.5 4,173,593 + MPMX20_03979 0.67 -0.0 4,173,639 + MPMX20_03979 0.77 -0.7 4,173,647 - MPMX20_03979 0.78 +0.5 4,173,647 - MPMX20_03979 0.78 +0.2 4,173,649 + MPMX20_03979 0.79 -0.5 4,173,700 - MPMX20_03979 0.89 -2.5 4,173,710 - +0.9 4,173,727 + -1.3 4,173,727 + -1.3 4,173,727 + -0.2 4,173,727 + -1.0 4,173,735 - -1.0 4,173,747 + -0.6 4,173,755 - -1.8 4,173,756 - -0.8 4,173,766 - +0.0 4,173,801 + +0.6 4,173,801 - -0.0 4,173,851 - -0.3 4,173,874 - -0.5 4,173,926 + MPMX20_03980 0.11 -1.5 4,173,926 + MPMX20_03980 0.11 +0.4 4,173,926 + MPMX20_03980 0.11 +0.3 4,173,934 - MPMX20_03980 0.12 -0.0 4,173,934 - MPMX20_03980 0.12 -1.8 4,173,944 - MPMX20_03980 0.12 -0.9 4,173,974 - MPMX20_03980 0.14 +1.0 4,173,994 - MPMX20_03980 0.16 -1.6 4,174,022 + MPMX20_03980 0.17 +0.1 4,174,022 + MPMX20_03980 0.17 -0.5 4,174,022 + MPMX20_03980 0.17 -0.0 4,174,022 + MPMX20_03980 0.17 -0.3 4,174,030 - MPMX20_03980 0.18 -0.3 4,174,035 - MPMX20_03980 0.18 +0.1 4,174,088 - MPMX20_03980 0.22 +1.0 4,174,090 + MPMX20_03980 0.22 -1.6 4,174,103 - MPMX20_03980 0.23 +0.2
Or see this region's nucleotide sequence