Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03461

Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03460 and MPMX20_03461 are separated by 431 nucleotidesMPMX20_03461 and MPMX20_03462 are separated by 129 nucleotidesMPMX20_03462 and MPMX20_03463 overlap by 4 nucleotides MPMX20_03460: MPMX20_03460 - 16S ribosomal RNA, at 3,649,422 to 3,650,957 _03460 MPMX20_03461: MPMX20_03461 - Chaperone protein ClpB, at 3,651,389 to 3,653,962 _03461 MPMX20_03462: MPMX20_03462 - Polyphenol oxidase, at 3,654,092 to 3,654,823 _03462 MPMX20_03463: MPMX20_03463 - Ribosomal large subunit pseudouridine synthase D, at 3,654,820 to 3,655,800 _03463 Position (kb) 3651 3652 3653 3654Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3651.226 kb on + strandat 3651.331 kb on - strandat 3651.459 kb on - strandat 3651.533 kb on - strandat 3651.552 kb on - strandat 3651.602 kb on + strandat 3651.609 kb on + strandat 3651.617 kb on - strandat 3651.617 kb on - strandat 3651.628 kb on + strandat 3651.670 kb on - strand, within MPMX20_03461at 3651.677 kb on - strand, within MPMX20_03461at 3651.679 kb on + strand, within MPMX20_03461at 3651.718 kb on + strand, within MPMX20_03461at 3651.735 kb on + strand, within MPMX20_03461at 3651.743 kb on - strand, within MPMX20_03461at 3651.772 kb on - strand, within MPMX20_03461at 3651.805 kb on + strand, within MPMX20_03461at 3651.851 kb on + strand, within MPMX20_03461at 3651.940 kb on + strand, within MPMX20_03461at 3652.007 kb on + strand, within MPMX20_03461at 3652.187 kb on + strand, within MPMX20_03461at 3652.200 kb on - strand, within MPMX20_03461at 3652.200 kb on - strand, within MPMX20_03461at 3652.215 kb on + strand, within MPMX20_03461at 3652.217 kb on + strand, within MPMX20_03461at 3652.241 kb on + strand, within MPMX20_03461at 3652.281 kb on - strand, within MPMX20_03461at 3652.286 kb on - strand, within MPMX20_03461at 3652.348 kb on + strand, within MPMX20_03461at 3652.462 kb on + strand, within MPMX20_03461at 3652.462 kb on + strand, within MPMX20_03461at 3652.493 kb on - strand, within MPMX20_03461at 3652.556 kb on + strand, within MPMX20_03461at 3652.591 kb on + strand, within MPMX20_03461at 3652.626 kb on + strand, within MPMX20_03461at 3652.632 kb on + strand, within MPMX20_03461at 3652.714 kb on + strand, within MPMX20_03461at 3652.714 kb on + strand, within MPMX20_03461at 3652.722 kb on - strand, within MPMX20_03461at 3652.724 kb on + strand, within MPMX20_03461at 3652.753 kb on + strand, within MPMX20_03461at 3652.802 kb on + strand, within MPMX20_03461at 3652.829 kb on - strand, within MPMX20_03461at 3652.869 kb on - strand, within MPMX20_03461at 3652.881 kb on - strand, within MPMX20_03461at 3652.881 kb on - strand, within MPMX20_03461at 3652.888 kb on - strand, within MPMX20_03461at 3653.011 kb on + strand, within MPMX20_03461at 3653.011 kb on - strand, within MPMX20_03461at 3653.024 kb on + strand, within MPMX20_03461at 3653.026 kb on + strand, within MPMX20_03461at 3653.026 kb on + strand, within MPMX20_03461at 3653.034 kb on - strand, within MPMX20_03461at 3653.034 kb on - strand, within MPMX20_03461at 3653.034 kb on - strand, within MPMX20_03461at 3653.051 kb on + strand, within MPMX20_03461at 3653.059 kb on - strand, within MPMX20_03461at 3653.104 kb on - strand, within MPMX20_03461at 3653.125 kb on - strand, within MPMX20_03461at 3653.168 kb on + strand, within MPMX20_03461at 3653.217 kb on + strand, within MPMX20_03461at 3653.310 kb on - strand, within MPMX20_03461at 3653.383 kb on - strand, within MPMX20_03461at 3653.391 kb on - strand, within MPMX20_03461at 3653.433 kb on + strand, within MPMX20_03461at 3653.433 kb on + strand, within MPMX20_03461at 3653.433 kb on + strand, within MPMX20_03461at 3653.433 kb on + strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.441 kb on - strand, within MPMX20_03461at 3653.443 kb on + strand, within MPMX20_03461at 3653.455 kb on + strand, within MPMX20_03461at 3653.455 kb on + strand, within MPMX20_03461at 3653.455 kb on + strand, within MPMX20_03461at 3653.565 kb on - strand, within MPMX20_03461at 3653.588 kb on - strand, within MPMX20_03461at 3653.594 kb on + strand, within MPMX20_03461at 3653.594 kb on + strand, within MPMX20_03461at 3653.644 kb on + strand, within MPMX20_03461at 3653.644 kb on + strand, within MPMX20_03461at 3653.722 kb on - strandat 3653.736 kb on + strandat 3653.745 kb on - strandat 3653.750 kb on - strandat 3653.754 kb on - strandat 3653.754 kb on - strandat 3653.756 kb on + strandat 3653.756 kb on + strandat 3653.764 kb on - strandat 3653.778 kb on + strandat 3653.793 kb on + strandat 3653.801 kb on - strandat 3653.894 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.899 kb on + strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.907 kb on - strandat 3653.919 kb on - strandat 3653.926 kb on - strandat 3653.926 kb on - strandat 3653.965 kb on - strandat 3653.969 kb on + strandat 3653.970 kb on + strandat 3653.977 kb on - strandat 3653.977 kb on - strandat 3653.987 kb on - strandat 3653.998 kb on + strandat 3654.013 kb on + strandat 3654.030 kb on - strandat 3654.074 kb on - strandat 3654.076 kb on + strandat 3654.079 kb on - strandat 3654.180 kb on - strand, within MPMX20_03462at 3654.197 kb on - strand, within MPMX20_03462at 3654.197 kb on - strand, within MPMX20_03462at 3654.312 kb on - strand, within MPMX20_03462at 3654.315 kb on + strand, within MPMX20_03462at 3654.322 kb on + strand, within MPMX20_03462at 3654.330 kb on - strand, within MPMX20_03462at 3654.349 kb on + strand, within MPMX20_03462at 3654.357 kb on - strand, within MPMX20_03462at 3654.366 kb on + strand, within MPMX20_03462at 3654.369 kb on - strand, within MPMX20_03462at 3654.394 kb on + strand, within MPMX20_03462at 3654.394 kb on + strand, within MPMX20_03462at 3654.426 kb on + strand, within MPMX20_03462at 3654.426 kb on + strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.434 kb on - strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.436 kb on + strand, within MPMX20_03462at 3654.444 kb on - strand, within MPMX20_03462at 3654.444 kb on - strand, within MPMX20_03462at 3654.444 kb on - strand, within MPMX20_03462at 3654.444 kb on - strand, within MPMX20_03462at 3654.538 kb on + strand, within MPMX20_03462at 3654.546 kb on - strand, within MPMX20_03462at 3654.593 kb on + strand, within MPMX20_03462at 3654.609 kb on + strand, within MPMX20_03462at 3654.617 kb on - strand, within MPMX20_03462at 3654.627 kb on - strand, within MPMX20_03462at 3654.627 kb on - strand, within MPMX20_03462at 3654.696 kb on - strand, within MPMX20_03462at 3654.697 kb on + strand, within MPMX20_03462at 3654.742 kb on + strand, within MPMX20_03462at 3654.760 kb on + strandat 3654.770 kb on + strandat 3654.783 kb on + strandat 3654.783 kb on + strandat 3654.783 kb on + strandat 3654.791 kb on - strandat 3654.791 kb on - strandat 3654.791 kb on - strandat 3654.791 kb on - strandat 3654.800 kb on + strandat 3654.818 kb on + strandat 3654.819 kb on + strandat 3654.826 kb on - strandat 3654.884 kb on + strandat 3654.884 kb on + strandat 3654.892 kb on - strandat 3654.929 kb on - strand, within MPMX20_03463at 3654.959 kb on - strand, within MPMX20_03463

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar
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3,651,226 + +3.1
3,651,331 - -2.5
3,651,459 - -0.9
3,651,533 - +0.9
3,651,552 - +1.5
3,651,602 + +1.5
3,651,609 + +0.6
3,651,617 - -1.9
3,651,617 - -1.5
3,651,628 + +0.1
3,651,670 - MPMX20_03461 0.11 -1.3
3,651,677 - MPMX20_03461 0.11 +1.1
3,651,679 + MPMX20_03461 0.11 +0.4
3,651,718 + MPMX20_03461 0.13 +0.8
3,651,735 + MPMX20_03461 0.13 +0.1
3,651,743 - MPMX20_03461 0.14 -1.8
3,651,772 - MPMX20_03461 0.15 +1.1
3,651,805 + MPMX20_03461 0.16 +1.3
3,651,851 + MPMX20_03461 0.18 -0.3
3,651,940 + MPMX20_03461 0.21 +2.1
3,652,007 + MPMX20_03461 0.24 -0.9
3,652,187 + MPMX20_03461 0.31 -0.8
3,652,200 - MPMX20_03461 0.32 -1.8
3,652,200 - MPMX20_03461 0.32 -1.2
3,652,215 + MPMX20_03461 0.32 +0.3
3,652,217 + MPMX20_03461 0.32 -0.6
3,652,241 + MPMX20_03461 0.33 -0.9
3,652,281 - MPMX20_03461 0.35 -1.8
3,652,286 - MPMX20_03461 0.35 -0.5
3,652,348 + MPMX20_03461 0.37 -2.4
3,652,462 + MPMX20_03461 0.42 +0.2
3,652,462 + MPMX20_03461 0.42 +0.1
3,652,493 - MPMX20_03461 0.43 -1.7
3,652,556 + MPMX20_03461 0.45 +0.5
3,652,591 + MPMX20_03461 0.47 -1.0
3,652,626 + MPMX20_03461 0.48 -0.3
3,652,632 + MPMX20_03461 0.48 -0.6
3,652,714 + MPMX20_03461 0.51 -1.5
3,652,714 + MPMX20_03461 0.51 -1.0
3,652,722 - MPMX20_03461 0.52 -0.5
3,652,724 + MPMX20_03461 0.52 +0.4
3,652,753 + MPMX20_03461 0.53 +1.2
3,652,802 + MPMX20_03461 0.55 +0.4
3,652,829 - MPMX20_03461 0.56 +1.5
3,652,869 - MPMX20_03461 0.57 +0.4
3,652,881 - MPMX20_03461 0.58 -0.3
3,652,881 - MPMX20_03461 0.58 +0.0
3,652,888 - MPMX20_03461 0.58 +0.4
3,653,011 + MPMX20_03461 0.63 -0.5
3,653,011 - MPMX20_03461 0.63 +1.3
3,653,024 + MPMX20_03461 0.64 +1.2
3,653,026 + MPMX20_03461 0.64 +0.2
3,653,026 + MPMX20_03461 0.64 +1.5
3,653,034 - MPMX20_03461 0.64 -1.8
3,653,034 - MPMX20_03461 0.64 +0.6
3,653,034 - MPMX20_03461 0.64 -1.4
3,653,051 + MPMX20_03461 0.65 +0.6
3,653,059 - MPMX20_03461 0.65 -0.5
3,653,104 - MPMX20_03461 0.67 +1.1
3,653,125 - MPMX20_03461 0.67 +1.3
3,653,168 + MPMX20_03461 0.69 +1.5
3,653,217 + MPMX20_03461 0.71 -1.0
3,653,310 - MPMX20_03461 0.75 -0.3
3,653,383 - MPMX20_03461 0.77 +0.5
3,653,391 - MPMX20_03461 0.78 -0.6
3,653,433 + MPMX20_03461 0.79 +0.4
3,653,433 + MPMX20_03461 0.79 +0.6
3,653,433 + MPMX20_03461 0.79 -2.2
3,653,433 + MPMX20_03461 0.79 +0.5
3,653,441 - MPMX20_03461 0.80 -1.8
3,653,441 - MPMX20_03461 0.80 -0.8
3,653,441 - MPMX20_03461 0.80 +0.5
3,653,441 - MPMX20_03461 0.80 -1.3
3,653,441 - MPMX20_03461 0.80 +0.3
3,653,441 - MPMX20_03461 0.80 +0.1
3,653,441 - MPMX20_03461 0.80 -0.2
3,653,441 - MPMX20_03461 0.80 +0.9
3,653,441 - MPMX20_03461 0.80 +1.4
3,653,441 - MPMX20_03461 0.80 +0.3
3,653,443 + MPMX20_03461 0.80 -0.3
3,653,455 + MPMX20_03461 0.80 -0.9
3,653,455 + MPMX20_03461 0.80 -0.6
3,653,455 + MPMX20_03461 0.80 -0.3
3,653,565 - MPMX20_03461 0.85 +0.4
3,653,588 - MPMX20_03461 0.85 +0.6
3,653,594 + MPMX20_03461 0.86 +0.6
3,653,594 + MPMX20_03461 0.86 +0.1
3,653,644 + MPMX20_03461 0.88 +0.9
3,653,644 + MPMX20_03461 0.88 +0.3
3,653,722 - -0.5
3,653,736 + +0.2
3,653,745 - -0.5
3,653,750 - -0.0
3,653,754 - +0.5
3,653,754 - +0.2
3,653,756 + -2.2
3,653,756 + -0.7
3,653,764 - +0.2
3,653,778 + +0.3
3,653,793 + +1.5
3,653,801 - +2.1
3,653,894 + -0.6
3,653,899 + +0.8
3,653,899 + -0.9
3,653,899 + -2.5
3,653,899 + +0.5
3,653,899 + +0.1
3,653,899 + -0.6
3,653,899 + +0.2
3,653,899 + -0.5
3,653,899 + -0.8
3,653,899 + +0.5
3,653,899 + -0.1
3,653,899 + +0.1
3,653,899 + -1.6
3,653,899 + +0.5
3,653,899 + +1.0
3,653,899 + +1.1
3,653,899 + +1.7
3,653,899 + -0.7
3,653,907 - +0.2
3,653,907 - -1.7
3,653,907 - +1.5
3,653,907 - -0.8
3,653,907 - -2.0
3,653,907 - +0.1
3,653,907 - +0.5
3,653,907 - -1.8
3,653,907 - -1.8
3,653,919 - -0.3
3,653,926 - -1.2
3,653,926 - -0.0
3,653,965 - -2.5
3,653,969 + +0.7
3,653,970 + -0.8
3,653,977 - +0.7
3,653,977 - -1.0
3,653,987 - -2.1
3,653,998 + +1.0
3,654,013 + +1.0
3,654,030 - -0.6
3,654,074 - -0.0
3,654,076 + -2.2
3,654,079 - +0.8
3,654,180 - MPMX20_03462 0.12 +1.5
3,654,197 - MPMX20_03462 0.14 -0.5
3,654,197 - MPMX20_03462 0.14 -3.4
3,654,312 - MPMX20_03462 0.30 -0.7
3,654,315 + MPMX20_03462 0.30 +1.0
3,654,322 + MPMX20_03462 0.31 +0.7
3,654,330 - MPMX20_03462 0.33 -0.1
3,654,349 + MPMX20_03462 0.35 -0.8
3,654,357 - MPMX20_03462 0.36 -0.0
3,654,366 + MPMX20_03462 0.37 +0.1
3,654,369 - MPMX20_03462 0.38 -1.4
3,654,394 + MPMX20_03462 0.41 -1.1
3,654,394 + MPMX20_03462 0.41 +0.5
3,654,426 + MPMX20_03462 0.46 -1.2
3,654,426 + MPMX20_03462 0.46 +0.7
3,654,434 - MPMX20_03462 0.47 +0.8
3,654,434 - MPMX20_03462 0.47 -0.5
3,654,434 - MPMX20_03462 0.47 +0.3
3,654,434 - MPMX20_03462 0.47 -0.6
3,654,434 - MPMX20_03462 0.47 -1.5
3,654,434 - MPMX20_03462 0.47 -3.5
3,654,436 + MPMX20_03462 0.47 -2.0
3,654,436 + MPMX20_03462 0.47 -0.7
3,654,436 + MPMX20_03462 0.47 -2.5
3,654,436 + MPMX20_03462 0.47 -2.3
3,654,436 + MPMX20_03462 0.47 +0.2
3,654,436 + MPMX20_03462 0.47 -0.9
3,654,436 + MPMX20_03462 0.47 +1.1
3,654,436 + MPMX20_03462 0.47 -0.8
3,654,444 - MPMX20_03462 0.48 +1.0
3,654,444 - MPMX20_03462 0.48 +0.8
3,654,444 - MPMX20_03462 0.48 +0.5
3,654,444 - MPMX20_03462 0.48 -0.4
3,654,538 + MPMX20_03462 0.61 +0.4
3,654,546 - MPMX20_03462 0.62 +1.7
3,654,593 + MPMX20_03462 0.68 -0.7
3,654,609 + MPMX20_03462 0.71 +1.5
3,654,617 - MPMX20_03462 0.72 -1.9
3,654,627 - MPMX20_03462 0.73 -0.5
3,654,627 - MPMX20_03462 0.73 -0.5
3,654,696 - MPMX20_03462 0.83 -0.5
3,654,697 + MPMX20_03462 0.83 -0.5
3,654,742 + MPMX20_03462 0.89 +0.4
3,654,760 + +2.1
3,654,770 + -0.3
3,654,783 + -1.6
3,654,783 + -0.8
3,654,783 + -2.3
3,654,791 - +0.2
3,654,791 - -3.0
3,654,791 - +0.5
3,654,791 - +0.1
3,654,800 + +0.5
3,654,818 + +1.2
3,654,819 + -0.7
3,654,826 - +1.0
3,654,884 + -0.8
3,654,884 + -0.8
3,654,892 - -0.5
3,654,929 - MPMX20_03463 0.11 -2.2
3,654,959 - MPMX20_03463 0.14 -1.0

Or see this region's nucleotide sequence