Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03460 and MPMX20_03461 are separated by 431 nucleotides MPMX20_03461 and MPMX20_03462 are separated by 129 nucleotides MPMX20_03462 and MPMX20_03463 overlap by 4 nucleotides
MPMX20_03460: MPMX20_03460 - 16S ribosomal RNA, at 3,649,422 to 3,650,957
_03460
MPMX20_03461: MPMX20_03461 - Chaperone protein ClpB, at 3,651,389 to 3,653,962
_03461
MPMX20_03462: MPMX20_03462 - Polyphenol oxidase, at 3,654,092 to 3,654,823
_03462
MPMX20_03463: MPMX20_03463 - Ribosomal large subunit pseudouridine synthase D, at 3,654,820 to 3,655,800
_03463
Position (kb)
3651
3652
3653
3654 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3651.226 kb on + strand at 3651.331 kb on - strand at 3651.459 kb on - strand at 3651.533 kb on - strand at 3651.552 kb on - strand at 3651.602 kb on + strand at 3651.609 kb on + strand at 3651.617 kb on - strand at 3651.617 kb on - strand at 3651.628 kb on + strand at 3651.670 kb on - strand, within MPMX20_03461 at 3651.677 kb on - strand, within MPMX20_03461 at 3651.679 kb on + strand, within MPMX20_03461 at 3651.718 kb on + strand, within MPMX20_03461 at 3651.735 kb on + strand, within MPMX20_03461 at 3651.743 kb on - strand, within MPMX20_03461 at 3651.772 kb on - strand, within MPMX20_03461 at 3651.805 kb on + strand, within MPMX20_03461 at 3651.851 kb on + strand, within MPMX20_03461 at 3651.940 kb on + strand, within MPMX20_03461 at 3652.007 kb on + strand, within MPMX20_03461 at 3652.187 kb on + strand, within MPMX20_03461 at 3652.200 kb on - strand, within MPMX20_03461 at 3652.200 kb on - strand, within MPMX20_03461 at 3652.215 kb on + strand, within MPMX20_03461 at 3652.217 kb on + strand, within MPMX20_03461 at 3652.241 kb on + strand, within MPMX20_03461 at 3652.281 kb on - strand, within MPMX20_03461 at 3652.286 kb on - strand, within MPMX20_03461 at 3652.348 kb on + strand, within MPMX20_03461 at 3652.462 kb on + strand, within MPMX20_03461 at 3652.462 kb on + strand, within MPMX20_03461 at 3652.493 kb on - strand, within MPMX20_03461 at 3652.556 kb on + strand, within MPMX20_03461 at 3652.591 kb on + strand, within MPMX20_03461 at 3652.626 kb on + strand, within MPMX20_03461 at 3652.632 kb on + strand, within MPMX20_03461 at 3652.714 kb on + strand, within MPMX20_03461 at 3652.714 kb on + strand, within MPMX20_03461 at 3652.722 kb on - strand, within MPMX20_03461 at 3652.724 kb on + strand, within MPMX20_03461 at 3652.753 kb on + strand, within MPMX20_03461 at 3652.802 kb on + strand, within MPMX20_03461 at 3652.829 kb on - strand, within MPMX20_03461 at 3652.869 kb on - strand, within MPMX20_03461 at 3652.881 kb on - strand, within MPMX20_03461 at 3652.881 kb on - strand, within MPMX20_03461 at 3652.888 kb on - strand, within MPMX20_03461 at 3653.011 kb on + strand, within MPMX20_03461 at 3653.011 kb on - strand, within MPMX20_03461 at 3653.024 kb on + strand, within MPMX20_03461 at 3653.026 kb on + strand, within MPMX20_03461 at 3653.026 kb on + strand, within MPMX20_03461 at 3653.034 kb on - strand, within MPMX20_03461 at 3653.034 kb on - strand, within MPMX20_03461 at 3653.034 kb on - strand, within MPMX20_03461 at 3653.051 kb on + strand, within MPMX20_03461 at 3653.059 kb on - strand, within MPMX20_03461 at 3653.104 kb on - strand, within MPMX20_03461 at 3653.125 kb on - strand, within MPMX20_03461 at 3653.168 kb on + strand, within MPMX20_03461 at 3653.217 kb on + strand, within MPMX20_03461 at 3653.310 kb on - strand, within MPMX20_03461 at 3653.383 kb on - strand, within MPMX20_03461 at 3653.391 kb on - strand, within MPMX20_03461 at 3653.433 kb on + strand, within MPMX20_03461 at 3653.433 kb on + strand, within MPMX20_03461 at 3653.433 kb on + strand, within MPMX20_03461 at 3653.433 kb on + strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.441 kb on - strand, within MPMX20_03461 at 3653.443 kb on + strand, within MPMX20_03461 at 3653.455 kb on + strand, within MPMX20_03461 at 3653.455 kb on + strand, within MPMX20_03461 at 3653.455 kb on + strand, within MPMX20_03461 at 3653.565 kb on - strand, within MPMX20_03461 at 3653.588 kb on - strand, within MPMX20_03461 at 3653.594 kb on + strand, within MPMX20_03461 at 3653.594 kb on + strand, within MPMX20_03461 at 3653.644 kb on + strand, within MPMX20_03461 at 3653.644 kb on + strand, within MPMX20_03461 at 3653.722 kb on - strand at 3653.736 kb on + strand at 3653.745 kb on - strand at 3653.750 kb on - strand at 3653.754 kb on - strand at 3653.754 kb on - strand at 3653.756 kb on + strand at 3653.756 kb on + strand at 3653.764 kb on - strand at 3653.778 kb on + strand at 3653.793 kb on + strand at 3653.801 kb on - strand at 3653.894 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.919 kb on - strand at 3653.926 kb on - strand at 3653.926 kb on - strand at 3653.965 kb on - strand at 3653.969 kb on + strand at 3653.970 kb on + strand at 3653.977 kb on - strand at 3653.977 kb on - strand at 3653.987 kb on - strand at 3653.998 kb on + strand at 3654.013 kb on + strand at 3654.030 kb on - strand at 3654.074 kb on - strand at 3654.076 kb on + strand at 3654.079 kb on - strand at 3654.180 kb on - strand, within MPMX20_03462 at 3654.197 kb on - strand, within MPMX20_03462 at 3654.197 kb on - strand, within MPMX20_03462 at 3654.312 kb on - strand, within MPMX20_03462 at 3654.315 kb on + strand, within MPMX20_03462 at 3654.322 kb on + strand, within MPMX20_03462 at 3654.330 kb on - strand, within MPMX20_03462 at 3654.349 kb on + strand, within MPMX20_03462 at 3654.357 kb on - strand, within MPMX20_03462 at 3654.366 kb on + strand, within MPMX20_03462 at 3654.369 kb on - strand, within MPMX20_03462 at 3654.394 kb on + strand, within MPMX20_03462 at 3654.394 kb on + strand, within MPMX20_03462 at 3654.426 kb on + strand, within MPMX20_03462 at 3654.426 kb on + strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.538 kb on + strand, within MPMX20_03462 at 3654.546 kb on - strand, within MPMX20_03462 at 3654.593 kb on + strand, within MPMX20_03462 at 3654.609 kb on + strand, within MPMX20_03462 at 3654.617 kb on - strand, within MPMX20_03462 at 3654.627 kb on - strand, within MPMX20_03462 at 3654.627 kb on - strand, within MPMX20_03462 at 3654.696 kb on - strand, within MPMX20_03462 at 3654.697 kb on + strand, within MPMX20_03462 at 3654.742 kb on + strand, within MPMX20_03462 at 3654.760 kb on + strand at 3654.770 kb on + strand at 3654.783 kb on + strand at 3654.783 kb on + strand at 3654.783 kb on + strand at 3654.791 kb on - strand at 3654.791 kb on - strand at 3654.791 kb on - strand at 3654.791 kb on - strand at 3654.800 kb on + strand at 3654.818 kb on + strand at 3654.819 kb on + strand at 3654.826 kb on - strand at 3654.884 kb on + strand at 3654.884 kb on + strand at 3654.892 kb on - strand at 3654.929 kb on - strand, within MPMX20_03463 at 3654.959 kb on - strand, within MPMX20_03463
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar remove 3,651,226 + +3.1 3,651,331 - -2.5 3,651,459 - -0.9 3,651,533 - +0.9 3,651,552 - +1.5 3,651,602 + +1.5 3,651,609 + +0.6 3,651,617 - -1.9 3,651,617 - -1.5 3,651,628 + +0.1 3,651,670 - MPMX20_03461 0.11 -1.3 3,651,677 - MPMX20_03461 0.11 +1.1 3,651,679 + MPMX20_03461 0.11 +0.4 3,651,718 + MPMX20_03461 0.13 +0.8 3,651,735 + MPMX20_03461 0.13 +0.1 3,651,743 - MPMX20_03461 0.14 -1.8 3,651,772 - MPMX20_03461 0.15 +1.1 3,651,805 + MPMX20_03461 0.16 +1.3 3,651,851 + MPMX20_03461 0.18 -0.3 3,651,940 + MPMX20_03461 0.21 +2.1 3,652,007 + MPMX20_03461 0.24 -0.9 3,652,187 + MPMX20_03461 0.31 -0.8 3,652,200 - MPMX20_03461 0.32 -1.8 3,652,200 - MPMX20_03461 0.32 -1.2 3,652,215 + MPMX20_03461 0.32 +0.3 3,652,217 + MPMX20_03461 0.32 -0.6 3,652,241 + MPMX20_03461 0.33 -0.9 3,652,281 - MPMX20_03461 0.35 -1.8 3,652,286 - MPMX20_03461 0.35 -0.5 3,652,348 + MPMX20_03461 0.37 -2.4 3,652,462 + MPMX20_03461 0.42 +0.2 3,652,462 + MPMX20_03461 0.42 +0.1 3,652,493 - MPMX20_03461 0.43 -1.7 3,652,556 + MPMX20_03461 0.45 +0.5 3,652,591 + MPMX20_03461 0.47 -1.0 3,652,626 + MPMX20_03461 0.48 -0.3 3,652,632 + MPMX20_03461 0.48 -0.6 3,652,714 + MPMX20_03461 0.51 -1.5 3,652,714 + MPMX20_03461 0.51 -1.0 3,652,722 - MPMX20_03461 0.52 -0.5 3,652,724 + MPMX20_03461 0.52 +0.4 3,652,753 + MPMX20_03461 0.53 +1.2 3,652,802 + MPMX20_03461 0.55 +0.4 3,652,829 - MPMX20_03461 0.56 +1.5 3,652,869 - MPMX20_03461 0.57 +0.4 3,652,881 - MPMX20_03461 0.58 -0.3 3,652,881 - MPMX20_03461 0.58 +0.0 3,652,888 - MPMX20_03461 0.58 +0.4 3,653,011 + MPMX20_03461 0.63 -0.5 3,653,011 - MPMX20_03461 0.63 +1.3 3,653,024 + MPMX20_03461 0.64 +1.2 3,653,026 + MPMX20_03461 0.64 +0.2 3,653,026 + MPMX20_03461 0.64 +1.5 3,653,034 - MPMX20_03461 0.64 -1.8 3,653,034 - MPMX20_03461 0.64 +0.6 3,653,034 - MPMX20_03461 0.64 -1.4 3,653,051 + MPMX20_03461 0.65 +0.6 3,653,059 - MPMX20_03461 0.65 -0.5 3,653,104 - MPMX20_03461 0.67 +1.1 3,653,125 - MPMX20_03461 0.67 +1.3 3,653,168 + MPMX20_03461 0.69 +1.5 3,653,217 + MPMX20_03461 0.71 -1.0 3,653,310 - MPMX20_03461 0.75 -0.3 3,653,383 - MPMX20_03461 0.77 +0.5 3,653,391 - MPMX20_03461 0.78 -0.6 3,653,433 + MPMX20_03461 0.79 +0.4 3,653,433 + MPMX20_03461 0.79 +0.6 3,653,433 + MPMX20_03461 0.79 -2.2 3,653,433 + MPMX20_03461 0.79 +0.5 3,653,441 - MPMX20_03461 0.80 -1.8 3,653,441 - MPMX20_03461 0.80 -0.8 3,653,441 - MPMX20_03461 0.80 +0.5 3,653,441 - MPMX20_03461 0.80 -1.3 3,653,441 - MPMX20_03461 0.80 +0.3 3,653,441 - MPMX20_03461 0.80 +0.1 3,653,441 - MPMX20_03461 0.80 -0.2 3,653,441 - MPMX20_03461 0.80 +0.9 3,653,441 - MPMX20_03461 0.80 +1.4 3,653,441 - MPMX20_03461 0.80 +0.3 3,653,443 + MPMX20_03461 0.80 -0.3 3,653,455 + MPMX20_03461 0.80 -0.9 3,653,455 + MPMX20_03461 0.80 -0.6 3,653,455 + MPMX20_03461 0.80 -0.3 3,653,565 - MPMX20_03461 0.85 +0.4 3,653,588 - MPMX20_03461 0.85 +0.6 3,653,594 + MPMX20_03461 0.86 +0.6 3,653,594 + MPMX20_03461 0.86 +0.1 3,653,644 + MPMX20_03461 0.88 +0.9 3,653,644 + MPMX20_03461 0.88 +0.3 3,653,722 - -0.5 3,653,736 + +0.2 3,653,745 - -0.5 3,653,750 - -0.0 3,653,754 - +0.5 3,653,754 - +0.2 3,653,756 + -2.2 3,653,756 + -0.7 3,653,764 - +0.2 3,653,778 + +0.3 3,653,793 + +1.5 3,653,801 - +2.1 3,653,894 + -0.6 3,653,899 + +0.8 3,653,899 + -0.9 3,653,899 + -2.5 3,653,899 + +0.5 3,653,899 + +0.1 3,653,899 + -0.6 3,653,899 + +0.2 3,653,899 + -0.5 3,653,899 + -0.8 3,653,899 + +0.5 3,653,899 + -0.1 3,653,899 + +0.1 3,653,899 + -1.6 3,653,899 + +0.5 3,653,899 + +1.0 3,653,899 + +1.1 3,653,899 + +1.7 3,653,899 + -0.7 3,653,907 - +0.2 3,653,907 - -1.7 3,653,907 - +1.5 3,653,907 - -0.8 3,653,907 - -2.0 3,653,907 - +0.1 3,653,907 - +0.5 3,653,907 - -1.8 3,653,907 - -1.8 3,653,919 - -0.3 3,653,926 - -1.2 3,653,926 - -0.0 3,653,965 - -2.5 3,653,969 + +0.7 3,653,970 + -0.8 3,653,977 - +0.7 3,653,977 - -1.0 3,653,987 - -2.1 3,653,998 + +1.0 3,654,013 + +1.0 3,654,030 - -0.6 3,654,074 - -0.0 3,654,076 + -2.2 3,654,079 - +0.8 3,654,180 - MPMX20_03462 0.12 +1.5 3,654,197 - MPMX20_03462 0.14 -0.5 3,654,197 - MPMX20_03462 0.14 -3.4 3,654,312 - MPMX20_03462 0.30 -0.7 3,654,315 + MPMX20_03462 0.30 +1.0 3,654,322 + MPMX20_03462 0.31 +0.7 3,654,330 - MPMX20_03462 0.33 -0.1 3,654,349 + MPMX20_03462 0.35 -0.8 3,654,357 - MPMX20_03462 0.36 -0.0 3,654,366 + MPMX20_03462 0.37 +0.1 3,654,369 - MPMX20_03462 0.38 -1.4 3,654,394 + MPMX20_03462 0.41 -1.1 3,654,394 + MPMX20_03462 0.41 +0.5 3,654,426 + MPMX20_03462 0.46 -1.2 3,654,426 + MPMX20_03462 0.46 +0.7 3,654,434 - MPMX20_03462 0.47 +0.8 3,654,434 - MPMX20_03462 0.47 -0.5 3,654,434 - MPMX20_03462 0.47 +0.3 3,654,434 - MPMX20_03462 0.47 -0.6 3,654,434 - MPMX20_03462 0.47 -1.5 3,654,434 - MPMX20_03462 0.47 -3.5 3,654,436 + MPMX20_03462 0.47 -2.0 3,654,436 + MPMX20_03462 0.47 -0.7 3,654,436 + MPMX20_03462 0.47 -2.5 3,654,436 + MPMX20_03462 0.47 -2.3 3,654,436 + MPMX20_03462 0.47 +0.2 3,654,436 + MPMX20_03462 0.47 -0.9 3,654,436 + MPMX20_03462 0.47 +1.1 3,654,436 + MPMX20_03462 0.47 -0.8 3,654,444 - MPMX20_03462 0.48 +1.0 3,654,444 - MPMX20_03462 0.48 +0.8 3,654,444 - MPMX20_03462 0.48 +0.5 3,654,444 - MPMX20_03462 0.48 -0.4 3,654,538 + MPMX20_03462 0.61 +0.4 3,654,546 - MPMX20_03462 0.62 +1.7 3,654,593 + MPMX20_03462 0.68 -0.7 3,654,609 + MPMX20_03462 0.71 +1.5 3,654,617 - MPMX20_03462 0.72 -1.9 3,654,627 - MPMX20_03462 0.73 -0.5 3,654,627 - MPMX20_03462 0.73 -0.5 3,654,696 - MPMX20_03462 0.83 -0.5 3,654,697 + MPMX20_03462 0.83 -0.5 3,654,742 + MPMX20_03462 0.89 +0.4 3,654,760 + +2.1 3,654,770 + -0.3 3,654,783 + -1.6 3,654,783 + -0.8 3,654,783 + -2.3 3,654,791 - +0.2 3,654,791 - -3.0 3,654,791 - +0.5 3,654,791 - +0.1 3,654,800 + +0.5 3,654,818 + +1.2 3,654,819 + -0.7 3,654,826 - +1.0 3,654,884 + -0.8 3,654,884 + -0.8 3,654,892 - -0.5 3,654,929 - MPMX20_03463 0.11 -2.2 3,654,959 - MPMX20_03463 0.14 -1.0
Or see this region's nucleotide sequence