Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01751 and MPMX20_01752 are separated by 157 nucleotides MPMX20_01752 and MPMX20_01753 are separated by 3 nucleotides MPMX20_01753 and MPMX20_01754 are separated by 11 nucleotides MPMX20_01754 and MPMX20_01755 are separated by 26 nucleotides
MPMX20_01751: MPMX20_01751 - Flagella basal body P-ring formation protein FlgA, at 1,843,572 to 1,844,231
_01751
MPMX20_01752: MPMX20_01752 - Flagellar basal body rod protein FlgB, at 1,844,389 to 1,844,805
_01752
MPMX20_01753: MPMX20_01753 - Flagellar basal-body rod protein FlgC, at 1,844,809 to 1,845,213
_01753
MPMX20_01754: MPMX20_01754 - Basal-body rod modification protein FlgD, at 1,845,225 to 1,845,935
_01754
MPMX20_01755: MPMX20_01755 - Flagellar hook protein FlgE, at 1,845,962 to 1,847,170
_01755
Position (kb)
1844
1845
1846 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1843.883 kb on + strand, within MPMX20_01751 at 1843.904 kb on + strand, within MPMX20_01751 at 1843.906 kb on + strand, within MPMX20_01751 at 1843.911 kb on + strand, within MPMX20_01751 at 1843.919 kb on - strand, within MPMX20_01751 at 1843.920 kb on + strand, within MPMX20_01751 at 1843.953 kb on + strand, within MPMX20_01751 at 1844.057 kb on + strand, within MPMX20_01751 at 1844.065 kb on - strand, within MPMX20_01751 at 1844.068 kb on - strand, within MPMX20_01751 at 1844.068 kb on - strand, within MPMX20_01751 at 1844.159 kb on + strand, within MPMX20_01751 at 1844.174 kb on + strand at 1844.175 kb on + strand at 1844.216 kb on + strand at 1844.216 kb on + strand at 1844.224 kb on - strand at 1844.224 kb on - strand at 1844.237 kb on + strand at 1844.245 kb on - strand at 1844.346 kb on + strand at 1844.346 kb on + strand at 1844.346 kb on + strand at 1844.346 kb on + strand at 1844.347 kb on - strand at 1844.389 kb on - strand at 1844.408 kb on - strand at 1844.431 kb on + strand, within MPMX20_01752 at 1844.560 kb on + strand, within MPMX20_01752 at 1844.584 kb on + strand, within MPMX20_01752 at 1844.616 kb on + strand, within MPMX20_01752 at 1844.624 kb on - strand, within MPMX20_01752 at 1844.624 kb on - strand, within MPMX20_01752 at 1844.624 kb on - strand, within MPMX20_01752 at 1844.664 kb on + strand, within MPMX20_01752 at 1844.664 kb on + strand, within MPMX20_01752 at 1844.733 kb on + strand, within MPMX20_01752 at 1844.743 kb on + strand, within MPMX20_01752 at 1844.743 kb on + strand, within MPMX20_01752 at 1844.743 kb on + strand, within MPMX20_01752 at 1844.743 kb on + strand, within MPMX20_01752 at 1844.743 kb on + strand, within MPMX20_01752 at 1844.743 kb on + strand, within MPMX20_01752 at 1844.743 kb on + strand, within MPMX20_01752 at 1844.751 kb on - strand, within MPMX20_01752 at 1844.751 kb on - strand, within MPMX20_01752 at 1844.751 kb on - strand, within MPMX20_01752 at 1844.794 kb on - strand at 1844.848 kb on - strand at 1844.859 kb on + strand, within MPMX20_01753 at 1844.859 kb on + strand, within MPMX20_01753 at 1844.859 kb on + strand, within MPMX20_01753 at 1844.866 kb on + strand, within MPMX20_01753 at 1844.866 kb on + strand, within MPMX20_01753 at 1844.867 kb on - strand, within MPMX20_01753 at 1844.867 kb on - strand, within MPMX20_01753 at 1844.867 kb on - strand, within MPMX20_01753 at 1844.868 kb on + strand, within MPMX20_01753 at 1844.874 kb on - strand, within MPMX20_01753 at 1844.928 kb on + strand, within MPMX20_01753 at 1844.936 kb on - strand, within MPMX20_01753 at 1844.936 kb on - strand, within MPMX20_01753 at 1844.936 kb on - strand, within MPMX20_01753 at 1844.936 kb on - strand, within MPMX20_01753 at 1845.130 kb on + strand, within MPMX20_01753 at 1845.160 kb on + strand, within MPMX20_01753 at 1845.160 kb on + strand, within MPMX20_01753 at 1845.160 kb on + strand, within MPMX20_01753 at 1845.162 kb on + strand, within MPMX20_01753 at 1845.162 kb on + strand, within MPMX20_01753 at 1845.162 kb on + strand, within MPMX20_01753 at 1845.162 kb on + strand, within MPMX20_01753 at 1845.162 kb on + strand, within MPMX20_01753 at 1845.170 kb on - strand, within MPMX20_01753 at 1845.170 kb on - strand, within MPMX20_01753 at 1845.186 kb on + strand at 1845.208 kb on - strand at 1845.425 kb on + strand, within MPMX20_01754 at 1845.433 kb on - strand, within MPMX20_01754 at 1845.433 kb on - strand, within MPMX20_01754 at 1845.452 kb on + strand, within MPMX20_01754 at 1845.548 kb on - strand, within MPMX20_01754 at 1845.670 kb on + strand, within MPMX20_01754 at 1845.670 kb on + strand, within MPMX20_01754 at 1845.675 kb on + strand, within MPMX20_01754 at 1845.675 kb on + strand, within MPMX20_01754 at 1845.675 kb on + strand, within MPMX20_01754 at 1845.678 kb on - strand, within MPMX20_01754 at 1845.683 kb on - strand, within MPMX20_01754 at 1845.683 kb on - strand, within MPMX20_01754 at 1845.685 kb on + strand, within MPMX20_01754 at 1845.701 kb on + strand, within MPMX20_01754 at 1845.701 kb on + strand, within MPMX20_01754 at 1845.711 kb on + strand, within MPMX20_01754 at 1845.721 kb on + strand, within MPMX20_01754 at 1845.722 kb on - strand, within MPMX20_01754 at 1845.729 kb on - strand, within MPMX20_01754 at 1845.842 kb on + strand, within MPMX20_01754 at 1845.842 kb on + strand, within MPMX20_01754 at 1845.850 kb on - strand, within MPMX20_01754 at 1845.896 kb on + strand at 1845.930 kb on + strand at 1845.937 kb on + strand at 1845.938 kb on - strand at 1845.945 kb on - strand at 1845.966 kb on - strand at 1846.095 kb on + strand, within MPMX20_01755 at 1846.141 kb on - strand, within MPMX20_01755 at 1846.178 kb on - strand, within MPMX20_01755
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar remove 1,843,883 + MPMX20_01751 0.47 -2.1 1,843,904 + MPMX20_01751 0.50 -1.2 1,843,906 + MPMX20_01751 0.51 -3.3 1,843,911 + MPMX20_01751 0.51 -1.0 1,843,919 - MPMX20_01751 0.53 -4.6 1,843,920 + MPMX20_01751 0.53 -1.6 1,843,953 + MPMX20_01751 0.58 -3.2 1,844,057 + MPMX20_01751 0.73 -1.7 1,844,065 - MPMX20_01751 0.75 -3.9 1,844,068 - MPMX20_01751 0.75 -1.0 1,844,068 - MPMX20_01751 0.75 -2.9 1,844,159 + MPMX20_01751 0.89 -5.7 1,844,174 + -2.2 1,844,175 + -3.5 1,844,216 + -2.2 1,844,216 + +0.6 1,844,224 - -1.9 1,844,224 - -0.7 1,844,237 + -1.1 1,844,245 - +0.0 1,844,346 + -3.9 1,844,346 + -2.0 1,844,346 + -2.7 1,844,346 + -1.8 1,844,347 - -1.4 1,844,389 - -1.9 1,844,408 - -2.5 1,844,431 + MPMX20_01752 0.10 -0.7 1,844,560 + MPMX20_01752 0.41 -2.4 1,844,584 + MPMX20_01752 0.47 -4.4 1,844,616 + MPMX20_01752 0.54 -3.3 1,844,624 - MPMX20_01752 0.56 +1.6 1,844,624 - MPMX20_01752 0.56 -1.2 1,844,624 - MPMX20_01752 0.56 -2.1 1,844,664 + MPMX20_01752 0.66 -4.2 1,844,664 + MPMX20_01752 0.66 -2.2 1,844,733 + MPMX20_01752 0.82 +0.0 1,844,743 + MPMX20_01752 0.85 -3.3 1,844,743 + MPMX20_01752 0.85 -3.3 1,844,743 + MPMX20_01752 0.85 +0.6 1,844,743 + MPMX20_01752 0.85 -3.2 1,844,743 + MPMX20_01752 0.85 -3.5 1,844,743 + MPMX20_01752 0.85 -1.5 1,844,743 + MPMX20_01752 0.85 -1.2 1,844,751 - MPMX20_01752 0.87 -2.9 1,844,751 - MPMX20_01752 0.87 -2.8 1,844,751 - MPMX20_01752 0.87 -0.7 1,844,794 - -2.6 1,844,848 - -3.9 1,844,859 + MPMX20_01753 0.12 -3.1 1,844,859 + MPMX20_01753 0.12 -3.4 1,844,859 + MPMX20_01753 0.12 -1.6 1,844,866 + MPMX20_01753 0.14 -4.2 1,844,866 + MPMX20_01753 0.14 -2.6 1,844,867 - MPMX20_01753 0.14 -4.0 1,844,867 - MPMX20_01753 0.14 -2.8 1,844,867 - MPMX20_01753 0.14 -0.7 1,844,868 + MPMX20_01753 0.15 -1.4 1,844,874 - MPMX20_01753 0.16 -2.1 1,844,928 + MPMX20_01753 0.29 -2.7 1,844,936 - MPMX20_01753 0.31 -3.7 1,844,936 - MPMX20_01753 0.31 -2.6 1,844,936 - MPMX20_01753 0.31 -2.2 1,844,936 - MPMX20_01753 0.31 -1.9 1,845,130 + MPMX20_01753 0.79 -4.3 1,845,160 + MPMX20_01753 0.87 -2.0 1,845,160 + MPMX20_01753 0.87 -2.9 1,845,160 + MPMX20_01753 0.87 -2.4 1,845,162 + MPMX20_01753 0.87 -4.1 1,845,162 + MPMX20_01753 0.87 -0.4 1,845,162 + MPMX20_01753 0.87 -4.2 1,845,162 + MPMX20_01753 0.87 -2.7 1,845,162 + MPMX20_01753 0.87 -4.2 1,845,170 - MPMX20_01753 0.89 +1.6 1,845,170 - MPMX20_01753 0.89 -3.6 1,845,186 + -1.7 1,845,208 - +0.6 1,845,425 + MPMX20_01754 0.28 -3.1 1,845,433 - MPMX20_01754 0.29 -1.6 1,845,433 - MPMX20_01754 0.29 -4.1 1,845,452 + MPMX20_01754 0.32 -3.1 1,845,548 - MPMX20_01754 0.45 -3.1 1,845,670 + MPMX20_01754 0.63 -2.3 1,845,670 + MPMX20_01754 0.63 -2.1 1,845,675 + MPMX20_01754 0.63 -2.1 1,845,675 + MPMX20_01754 0.63 -2.9 1,845,675 + MPMX20_01754 0.63 -2.4 1,845,678 - MPMX20_01754 0.64 -2.6 1,845,683 - MPMX20_01754 0.64 -2.5 1,845,683 - MPMX20_01754 0.64 -2.2 1,845,685 + MPMX20_01754 0.65 +1.6 1,845,701 + MPMX20_01754 0.67 -5.1 1,845,701 + MPMX20_01754 0.67 -2.5 1,845,711 + MPMX20_01754 0.68 -2.3 1,845,721 + MPMX20_01754 0.70 -2.8 1,845,722 - MPMX20_01754 0.70 -4.8 1,845,729 - MPMX20_01754 0.71 -1.7 1,845,842 + MPMX20_01754 0.87 -2.6 1,845,842 + MPMX20_01754 0.87 -2.2 1,845,850 - MPMX20_01754 0.88 -2.9 1,845,896 + -4.0 1,845,930 + -3.2 1,845,937 + -3.8 1,845,938 - -3.5 1,845,945 - -4.3 1,845,966 - -2.0 1,846,095 + MPMX20_01755 0.11 -3.7 1,846,141 - MPMX20_01755 0.15 -4.0 1,846,178 - MPMX20_01755 0.18 -4.1
Or see this region's nucleotide sequence