Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01752

Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01750 and MPMX20_01751 are separated by 93 nucleotidesMPMX20_01751 and MPMX20_01752 are separated by 157 nucleotidesMPMX20_01752 and MPMX20_01753 are separated by 3 nucleotidesMPMX20_01753 and MPMX20_01754 are separated by 11 nucleotides MPMX20_01750: MPMX20_01750 - Negative regulator of flagellin synthesis, at 1,843,185 to 1,843,478 _01750 MPMX20_01751: MPMX20_01751 - Flagella basal body P-ring formation protein FlgA, at 1,843,572 to 1,844,231 _01751 MPMX20_01752: MPMX20_01752 - Flagellar basal body rod protein FlgB, at 1,844,389 to 1,844,805 _01752 MPMX20_01753: MPMX20_01753 - Flagellar basal-body rod protein FlgC, at 1,844,809 to 1,845,213 _01753 MPMX20_01754: MPMX20_01754 - Basal-body rod modification protein FlgD, at 1,845,225 to 1,845,935 _01754 Position (kb) 1844 1845Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1843.428 kb on + strand, within MPMX20_01750at 1843.430 kb on + strand, within MPMX20_01750at 1843.430 kb on + strand, within MPMX20_01750at 1843.430 kb on + strand, within MPMX20_01750at 1843.430 kb on + strand, within MPMX20_01750at 1843.433 kb on + strand, within MPMX20_01750at 1843.436 kb on - strand, within MPMX20_01750at 1843.438 kb on - strand, within MPMX20_01750at 1843.438 kb on - strand, within MPMX20_01750at 1843.438 kb on - strand, within MPMX20_01750at 1843.480 kb on + strandat 1843.488 kb on - strandat 1843.488 kb on - strandat 1843.490 kb on + strandat 1843.519 kb on - strandat 1843.633 kb on - strandat 1843.633 kb on - strandat 1843.671 kb on + strand, within MPMX20_01751at 1843.679 kb on - strand, within MPMX20_01751at 1843.749 kb on - strand, within MPMX20_01751at 1843.783 kb on - strand, within MPMX20_01751at 1843.802 kb on + strand, within MPMX20_01751at 1843.883 kb on + strand, within MPMX20_01751at 1843.904 kb on + strand, within MPMX20_01751at 1843.906 kb on + strand, within MPMX20_01751at 1843.911 kb on + strand, within MPMX20_01751at 1843.919 kb on - strand, within MPMX20_01751at 1843.920 kb on + strand, within MPMX20_01751at 1843.953 kb on + strand, within MPMX20_01751at 1844.057 kb on + strand, within MPMX20_01751at 1844.065 kb on - strand, within MPMX20_01751at 1844.068 kb on - strand, within MPMX20_01751at 1844.068 kb on - strand, within MPMX20_01751at 1844.159 kb on + strand, within MPMX20_01751at 1844.174 kb on + strandat 1844.175 kb on + strandat 1844.216 kb on + strandat 1844.216 kb on + strandat 1844.224 kb on - strandat 1844.224 kb on - strandat 1844.237 kb on + strandat 1844.245 kb on - strandat 1844.346 kb on + strandat 1844.346 kb on + strandat 1844.346 kb on + strandat 1844.346 kb on + strandat 1844.347 kb on - strandat 1844.389 kb on - strandat 1844.408 kb on - strandat 1844.431 kb on + strand, within MPMX20_01752at 1844.560 kb on + strand, within MPMX20_01752at 1844.584 kb on + strand, within MPMX20_01752at 1844.616 kb on + strand, within MPMX20_01752at 1844.624 kb on - strand, within MPMX20_01752at 1844.624 kb on - strand, within MPMX20_01752at 1844.624 kb on - strand, within MPMX20_01752at 1844.664 kb on + strand, within MPMX20_01752at 1844.664 kb on + strand, within MPMX20_01752at 1844.733 kb on + strand, within MPMX20_01752at 1844.743 kb on + strand, within MPMX20_01752at 1844.743 kb on + strand, within MPMX20_01752at 1844.743 kb on + strand, within MPMX20_01752at 1844.743 kb on + strand, within MPMX20_01752at 1844.743 kb on + strand, within MPMX20_01752at 1844.743 kb on + strand, within MPMX20_01752at 1844.743 kb on + strand, within MPMX20_01752at 1844.751 kb on - strand, within MPMX20_01752at 1844.751 kb on - strand, within MPMX20_01752at 1844.751 kb on - strand, within MPMX20_01752at 1844.794 kb on - strandat 1844.848 kb on - strandat 1844.859 kb on + strand, within MPMX20_01753at 1844.859 kb on + strand, within MPMX20_01753at 1844.859 kb on + strand, within MPMX20_01753at 1844.866 kb on + strand, within MPMX20_01753at 1844.866 kb on + strand, within MPMX20_01753at 1844.867 kb on - strand, within MPMX20_01753at 1844.867 kb on - strand, within MPMX20_01753at 1844.867 kb on - strand, within MPMX20_01753at 1844.868 kb on + strand, within MPMX20_01753at 1844.874 kb on - strand, within MPMX20_01753at 1844.928 kb on + strand, within MPMX20_01753at 1844.936 kb on - strand, within MPMX20_01753at 1844.936 kb on - strand, within MPMX20_01753at 1844.936 kb on - strand, within MPMX20_01753at 1844.936 kb on - strand, within MPMX20_01753at 1845.130 kb on + strand, within MPMX20_01753at 1845.160 kb on + strand, within MPMX20_01753at 1845.160 kb on + strand, within MPMX20_01753at 1845.160 kb on + strand, within MPMX20_01753at 1845.162 kb on + strand, within MPMX20_01753at 1845.162 kb on + strand, within MPMX20_01753at 1845.162 kb on + strand, within MPMX20_01753at 1845.162 kb on + strand, within MPMX20_01753at 1845.162 kb on + strand, within MPMX20_01753at 1845.170 kb on - strand, within MPMX20_01753at 1845.170 kb on - strand, within MPMX20_01753at 1845.186 kb on + strandat 1845.208 kb on - strandat 1845.425 kb on + strand, within MPMX20_01754at 1845.433 kb on - strand, within MPMX20_01754at 1845.433 kb on - strand, within MPMX20_01754at 1845.452 kb on + strand, within MPMX20_01754at 1845.548 kb on - strand, within MPMX20_01754at 1845.670 kb on + strand, within MPMX20_01754at 1845.670 kb on + strand, within MPMX20_01754at 1845.675 kb on + strand, within MPMX20_01754at 1845.675 kb on + strand, within MPMX20_01754at 1845.675 kb on + strand, within MPMX20_01754at 1845.678 kb on - strand, within MPMX20_01754at 1845.683 kb on - strand, within MPMX20_01754at 1845.683 kb on - strand, within MPMX20_01754at 1845.685 kb on + strand, within MPMX20_01754at 1845.701 kb on + strand, within MPMX20_01754at 1845.701 kb on + strand, within MPMX20_01754at 1845.711 kb on + strand, within MPMX20_01754at 1845.721 kb on + strand, within MPMX20_01754at 1845.722 kb on - strand, within MPMX20_01754at 1845.729 kb on - strand, within MPMX20_01754

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar
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1,843,428 + MPMX20_01750 0.83 -0.9
1,843,430 + MPMX20_01750 0.83 -0.4
1,843,430 + MPMX20_01750 0.83 -0.6
1,843,430 + MPMX20_01750 0.83 -0.4
1,843,430 + MPMX20_01750 0.83 -1.3
1,843,433 + MPMX20_01750 0.84 -3.4
1,843,436 - MPMX20_01750 0.85 -1.4
1,843,438 - MPMX20_01750 0.86 -0.9
1,843,438 - MPMX20_01750 0.86 -2.3
1,843,438 - MPMX20_01750 0.86 -1.4
1,843,480 + -0.1
1,843,488 - -2.0
1,843,488 - +0.4
1,843,490 + -1.1
1,843,519 - +0.8
1,843,633 - -2.1
1,843,633 - -2.0
1,843,671 + MPMX20_01751 0.15 -2.2
1,843,679 - MPMX20_01751 0.16 -1.6
1,843,749 - MPMX20_01751 0.27 -1.2
1,843,783 - MPMX20_01751 0.32 -1.7
1,843,802 + MPMX20_01751 0.35 -2.5
1,843,883 + MPMX20_01751 0.47 -2.1
1,843,904 + MPMX20_01751 0.50 -1.2
1,843,906 + MPMX20_01751 0.51 -3.3
1,843,911 + MPMX20_01751 0.51 -1.0
1,843,919 - MPMX20_01751 0.53 -4.6
1,843,920 + MPMX20_01751 0.53 -1.6
1,843,953 + MPMX20_01751 0.58 -3.2
1,844,057 + MPMX20_01751 0.73 -1.7
1,844,065 - MPMX20_01751 0.75 -3.9
1,844,068 - MPMX20_01751 0.75 -1.0
1,844,068 - MPMX20_01751 0.75 -2.9
1,844,159 + MPMX20_01751 0.89 -5.7
1,844,174 + -2.2
1,844,175 + -3.5
1,844,216 + -2.2
1,844,216 + +0.6
1,844,224 - -1.9
1,844,224 - -0.7
1,844,237 + -1.1
1,844,245 - +0.0
1,844,346 + -3.9
1,844,346 + -2.0
1,844,346 + -2.7
1,844,346 + -1.8
1,844,347 - -1.4
1,844,389 - -1.9
1,844,408 - -2.5
1,844,431 + MPMX20_01752 0.10 -0.7
1,844,560 + MPMX20_01752 0.41 -2.4
1,844,584 + MPMX20_01752 0.47 -4.4
1,844,616 + MPMX20_01752 0.54 -3.3
1,844,624 - MPMX20_01752 0.56 +1.6
1,844,624 - MPMX20_01752 0.56 -1.2
1,844,624 - MPMX20_01752 0.56 -2.1
1,844,664 + MPMX20_01752 0.66 -4.2
1,844,664 + MPMX20_01752 0.66 -2.2
1,844,733 + MPMX20_01752 0.82 +0.0
1,844,743 + MPMX20_01752 0.85 -3.3
1,844,743 + MPMX20_01752 0.85 -3.3
1,844,743 + MPMX20_01752 0.85 +0.6
1,844,743 + MPMX20_01752 0.85 -3.2
1,844,743 + MPMX20_01752 0.85 -3.5
1,844,743 + MPMX20_01752 0.85 -1.5
1,844,743 + MPMX20_01752 0.85 -1.2
1,844,751 - MPMX20_01752 0.87 -2.9
1,844,751 - MPMX20_01752 0.87 -2.8
1,844,751 - MPMX20_01752 0.87 -0.7
1,844,794 - -2.6
1,844,848 - -3.9
1,844,859 + MPMX20_01753 0.12 -3.1
1,844,859 + MPMX20_01753 0.12 -3.4
1,844,859 + MPMX20_01753 0.12 -1.6
1,844,866 + MPMX20_01753 0.14 -4.2
1,844,866 + MPMX20_01753 0.14 -2.6
1,844,867 - MPMX20_01753 0.14 -4.0
1,844,867 - MPMX20_01753 0.14 -2.8
1,844,867 - MPMX20_01753 0.14 -0.7
1,844,868 + MPMX20_01753 0.15 -1.4
1,844,874 - MPMX20_01753 0.16 -2.1
1,844,928 + MPMX20_01753 0.29 -2.7
1,844,936 - MPMX20_01753 0.31 -3.7
1,844,936 - MPMX20_01753 0.31 -2.6
1,844,936 - MPMX20_01753 0.31 -2.2
1,844,936 - MPMX20_01753 0.31 -1.9
1,845,130 + MPMX20_01753 0.79 -4.3
1,845,160 + MPMX20_01753 0.87 -2.0
1,845,160 + MPMX20_01753 0.87 -2.9
1,845,160 + MPMX20_01753 0.87 -2.4
1,845,162 + MPMX20_01753 0.87 -4.1
1,845,162 + MPMX20_01753 0.87 -0.4
1,845,162 + MPMX20_01753 0.87 -4.2
1,845,162 + MPMX20_01753 0.87 -2.7
1,845,162 + MPMX20_01753 0.87 -4.2
1,845,170 - MPMX20_01753 0.89 +1.6
1,845,170 - MPMX20_01753 0.89 -3.6
1,845,186 + -1.7
1,845,208 - +0.6
1,845,425 + MPMX20_01754 0.28 -3.1
1,845,433 - MPMX20_01754 0.29 -1.6
1,845,433 - MPMX20_01754 0.29 -4.1
1,845,452 + MPMX20_01754 0.32 -3.1
1,845,548 - MPMX20_01754 0.45 -3.1
1,845,670 + MPMX20_01754 0.63 -2.3
1,845,670 + MPMX20_01754 0.63 -2.1
1,845,675 + MPMX20_01754 0.63 -2.1
1,845,675 + MPMX20_01754 0.63 -2.9
1,845,675 + MPMX20_01754 0.63 -2.4
1,845,678 - MPMX20_01754 0.64 -2.6
1,845,683 - MPMX20_01754 0.64 -2.5
1,845,683 - MPMX20_01754 0.64 -2.2
1,845,685 + MPMX20_01754 0.65 +1.6
1,845,701 + MPMX20_01754 0.67 -5.1
1,845,701 + MPMX20_01754 0.67 -2.5
1,845,711 + MPMX20_01754 0.68 -2.3
1,845,721 + MPMX20_01754 0.70 -2.8
1,845,722 - MPMX20_01754 0.70 -4.8
1,845,729 - MPMX20_01754 0.71 -1.7

Or see this region's nucleotide sequence