Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01664

Experiment: Motility test in 1X LB; 1 day; outer cut; 0.3% agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01662 and MPMX20_01663 are separated by 90 nucleotidesMPMX20_01663 and MPMX20_01664 overlap by 4 nucleotidesMPMX20_01664 and MPMX20_01665 overlap by 4 nucleotidesMPMX20_01665 and MPMX20_01666 are separated by 10 nucleotides MPMX20_01662: MPMX20_01662 - hypothetical protein, at 1,761,028 to 1,761,960 _01662 MPMX20_01663: MPMX20_01663 - hypothetical protein, at 1,762,051 to 1,762,437 _01663 MPMX20_01664: MPMX20_01664 - 1-carboxybiuret hydrolase subunit AtzE, at 1,762,434 to 1,763,831 _01664 MPMX20_01665: MPMX20_01665 - hypothetical protein, at 1,763,828 to 1,764,016 _01665 MPMX20_01666: MPMX20_01666 - Oxamate amidohydrolase proenzyme, at 1,764,027 to 1,765,610 _01666 Position (kb) 1762 1763 1764Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1761.468 kb on + strand, within MPMX20_01662at 1761.468 kb on + strand, within MPMX20_01662at 1761.476 kb on - strand, within MPMX20_01662at 1761.476 kb on - strand, within MPMX20_01662at 1761.484 kb on + strand, within MPMX20_01662at 1761.588 kb on - strand, within MPMX20_01662at 1761.603 kb on - strand, within MPMX20_01662at 1761.633 kb on - strand, within MPMX20_01662at 1761.661 kb on - strand, within MPMX20_01662at 1761.664 kb on + strand, within MPMX20_01662at 1761.717 kb on + strand, within MPMX20_01662at 1761.723 kb on - strand, within MPMX20_01662at 1761.735 kb on + strand, within MPMX20_01662at 1761.735 kb on + strand, within MPMX20_01662at 1761.743 kb on - strand, within MPMX20_01662at 1761.780 kb on + strand, within MPMX20_01662at 1761.875 kb on + strandat 1761.880 kb on + strandat 1761.900 kb on + strandat 1761.900 kb on + strandat 1761.905 kb on + strandat 1761.913 kb on - strandat 1761.963 kb on + strandat 1761.971 kb on - strandat 1761.993 kb on - strandat 1762.003 kb on - strandat 1762.039 kb on + strandat 1762.049 kb on - strandat 1762.074 kb on - strandat 1762.074 kb on - strandat 1762.172 kb on + strand, within MPMX20_01663at 1762.172 kb on + strand, within MPMX20_01663at 1762.180 kb on - strand, within MPMX20_01663at 1762.180 kb on - strand, within MPMX20_01663at 1762.180 kb on - strand, within MPMX20_01663at 1762.180 kb on - strand, within MPMX20_01663at 1762.181 kb on + strand, within MPMX20_01663at 1762.271 kb on + strand, within MPMX20_01663at 1762.286 kb on - strand, within MPMX20_01663at 1762.298 kb on - strand, within MPMX20_01663at 1762.316 kb on + strand, within MPMX20_01663at 1762.324 kb on - strand, within MPMX20_01663at 1762.346 kb on - strand, within MPMX20_01663at 1762.357 kb on - strand, within MPMX20_01663at 1762.375 kb on + strand, within MPMX20_01663at 1762.381 kb on - strand, within MPMX20_01663at 1762.388 kb on - strand, within MPMX20_01663at 1762.421 kb on - strandat 1762.579 kb on - strand, within MPMX20_01664at 1762.623 kb on + strand, within MPMX20_01664at 1762.640 kb on - strand, within MPMX20_01664at 1762.818 kb on - strand, within MPMX20_01664at 1762.863 kb on - strand, within MPMX20_01664at 1762.929 kb on - strand, within MPMX20_01664at 1762.973 kb on - strand, within MPMX20_01664at 1762.973 kb on - strand, within MPMX20_01664at 1763.085 kb on + strand, within MPMX20_01664at 1763.093 kb on - strand, within MPMX20_01664at 1763.141 kb on - strand, within MPMX20_01664at 1763.203 kb on - strand, within MPMX20_01664at 1763.258 kb on - strand, within MPMX20_01664at 1763.331 kb on - strand, within MPMX20_01664at 1763.407 kb on - strand, within MPMX20_01664at 1763.493 kb on + strand, within MPMX20_01664at 1763.515 kb on - strand, within MPMX20_01664at 1763.542 kb on - strand, within MPMX20_01664at 1763.544 kb on + strand, within MPMX20_01664at 1763.544 kb on + strand, within MPMX20_01664at 1763.549 kb on + strand, within MPMX20_01664at 1763.549 kb on + strand, within MPMX20_01664at 1763.562 kb on - strand, within MPMX20_01664at 1763.708 kb on - strandat 1763.714 kb on - strandat 1763.737 kb on - strandat 1763.802 kb on - strandat 1763.825 kb on + strandat 1763.825 kb on + strandat 1763.842 kb on + strandat 1763.845 kb on - strandat 1763.920 kb on - strand, within MPMX20_01665at 1763.924 kb on - strand, within MPMX20_01665at 1763.950 kb on + strand, within MPMX20_01665at 1763.950 kb on + strand, within MPMX20_01665at 1763.953 kb on - strand, within MPMX20_01665at 1764.078 kb on - strandat 1764.078 kb on - strandat 1764.114 kb on + strandat 1764.114 kb on + strandat 1764.114 kb on + strandat 1764.206 kb on + strand, within MPMX20_01666at 1764.235 kb on - strand, within MPMX20_01666at 1764.237 kb on - strand, within MPMX20_01666at 1764.250 kb on - strand, within MPMX20_01666at 1764.270 kb on + strand, within MPMX20_01666at 1764.278 kb on + strand, within MPMX20_01666at 1764.278 kb on + strand, within MPMX20_01666at 1764.286 kb on - strand, within MPMX20_01666at 1764.293 kb on - strand, within MPMX20_01666at 1764.467 kb on - strand, within MPMX20_01666at 1764.620 kb on - strand, within MPMX20_01666at 1764.682 kb on + strand, within MPMX20_01666at 1764.718 kb on - strand, within MPMX20_01666at 1764.725 kb on - strand, within MPMX20_01666at 1764.796 kb on + strand, within MPMX20_01666at 1764.820 kb on - strand, within MPMX20_01666

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; outer cut; 0.3% agar
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1,761,468 + MPMX20_01662 0.47 -0.7
1,761,468 + MPMX20_01662 0.47 -0.1
1,761,476 - MPMX20_01662 0.48 -1.6
1,761,476 - MPMX20_01662 0.48 +0.7
1,761,484 + MPMX20_01662 0.49 -0.5
1,761,588 - MPMX20_01662 0.60 -0.6
1,761,603 - MPMX20_01662 0.62 +1.6
1,761,633 - MPMX20_01662 0.65 +0.6
1,761,661 - MPMX20_01662 0.68 +0.1
1,761,664 + MPMX20_01662 0.68 -3.4
1,761,717 + MPMX20_01662 0.74 +0.2
1,761,723 - MPMX20_01662 0.74 +0.0
1,761,735 + MPMX20_01662 0.76 -0.3
1,761,735 + MPMX20_01662 0.76 -0.4
1,761,743 - MPMX20_01662 0.77 +0.2
1,761,780 + MPMX20_01662 0.81 -0.2
1,761,875 + -0.7
1,761,880 + -0.9
1,761,900 + +0.0
1,761,900 + -1.6
1,761,905 + -0.9
1,761,913 - +0.6
1,761,963 + -0.8
1,761,971 - +1.3
1,761,993 - +0.3
1,762,003 - +1.9
1,762,039 + -1.7
1,762,049 - -2.4
1,762,074 - -0.2
1,762,074 - +0.8
1,762,172 + MPMX20_01663 0.31 -0.4
1,762,172 + MPMX20_01663 0.31 +1.3
1,762,180 - MPMX20_01663 0.33 +0.4
1,762,180 - MPMX20_01663 0.33 +1.3
1,762,180 - MPMX20_01663 0.33 +1.3
1,762,180 - MPMX20_01663 0.33 +1.4
1,762,181 + MPMX20_01663 0.34 -0.7
1,762,271 + MPMX20_01663 0.57 -0.4
1,762,286 - MPMX20_01663 0.61 +0.7
1,762,298 - MPMX20_01663 0.64 -1.1
1,762,316 + MPMX20_01663 0.68 +0.0
1,762,324 - MPMX20_01663 0.71 +0.6
1,762,346 - MPMX20_01663 0.76 -0.2
1,762,357 - MPMX20_01663 0.79 -1.0
1,762,375 + MPMX20_01663 0.84 +1.0
1,762,381 - MPMX20_01663 0.85 -0.8
1,762,388 - MPMX20_01663 0.87 -0.2
1,762,421 - +0.5
1,762,579 - MPMX20_01664 0.10 -2.1
1,762,623 + MPMX20_01664 0.14 +1.8
1,762,640 - MPMX20_01664 0.15 -0.3
1,762,818 - MPMX20_01664 0.27 -1.7
1,762,863 - MPMX20_01664 0.31 +1.1
1,762,929 - MPMX20_01664 0.35 +0.3
1,762,973 - MPMX20_01664 0.39 +1.3
1,762,973 - MPMX20_01664 0.39 -0.4
1,763,085 + MPMX20_01664 0.47 +0.8
1,763,093 - MPMX20_01664 0.47 +0.9
1,763,141 - MPMX20_01664 0.51 +0.8
1,763,203 - MPMX20_01664 0.55 -2.5
1,763,258 - MPMX20_01664 0.59 +0.3
1,763,331 - MPMX20_01664 0.64 -0.4
1,763,407 - MPMX20_01664 0.70 +0.3
1,763,493 + MPMX20_01664 0.76 +1.5
1,763,515 - MPMX20_01664 0.77 -1.3
1,763,542 - MPMX20_01664 0.79 -1.5
1,763,544 + MPMX20_01664 0.79 -0.0
1,763,544 + MPMX20_01664 0.79 +2.3
1,763,549 + MPMX20_01664 0.80 +0.2
1,763,549 + MPMX20_01664 0.80 +1.2
1,763,562 - MPMX20_01664 0.81 -0.6
1,763,708 - +0.1
1,763,714 - -0.4
1,763,737 - +0.2
1,763,802 - +0.1
1,763,825 + -0.6
1,763,825 + -0.0
1,763,842 + -0.0
1,763,845 - -0.6
1,763,920 - MPMX20_01665 0.49 -0.5
1,763,924 - MPMX20_01665 0.51 -0.7
1,763,950 + MPMX20_01665 0.65 -0.7
1,763,950 + MPMX20_01665 0.65 -2.5
1,763,953 - MPMX20_01665 0.66 -2.2
1,764,078 - -0.5
1,764,078 - +0.8
1,764,114 + -0.0
1,764,114 + +0.9
1,764,114 + +0.8
1,764,206 + MPMX20_01666 0.11 +1.3
1,764,235 - MPMX20_01666 0.13 -0.5
1,764,237 - MPMX20_01666 0.13 +0.8
1,764,250 - MPMX20_01666 0.14 +0.6
1,764,270 + MPMX20_01666 0.15 -0.3
1,764,278 + MPMX20_01666 0.16 +0.9
1,764,278 + MPMX20_01666 0.16 -1.0
1,764,286 - MPMX20_01666 0.16 -0.4
1,764,293 - MPMX20_01666 0.17 -2.9
1,764,467 - MPMX20_01666 0.28 +0.6
1,764,620 - MPMX20_01666 0.37 -1.8
1,764,682 + MPMX20_01666 0.41 +1.6
1,764,718 - MPMX20_01666 0.44 +1.7
1,764,725 - MPMX20_01666 0.44 -0.2
1,764,796 + MPMX20_01666 0.49 -0.3
1,764,820 - MPMX20_01666 0.50 +0.2

Or see this region's nucleotide sequence