Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03909

Experiment: Motility test in 1X LB; 1 day; inner cut; 0.3% agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03908 and MPMX20_03909 are separated by 150 nucleotidesMPMX20_03909 and MPMX20_03910 are separated by 84 nucleotidesMPMX20_03910 and MPMX20_03911 are separated by 112 nucleotidesMPMX20_03911 and MPMX20_03912 are separated by 145 nucleotides MPMX20_03908: MPMX20_03908 - DNA primase, at 4,116,250 to 4,117,995 _03908 MPMX20_03909: MPMX20_03909 - RNA polymerase sigma factor RpoD, at 4,118,146 to 4,119,993 _03909 MPMX20_03910: MPMX20_03910 - G/U mismatch-specific DNA glycosylase, at 4,120,078 to 4,120,596 _03910 MPMX20_03911: MPMX20_03911 - tRNA-Met, at 4,120,709 to 4,120,784 _03911 MPMX20_03912: MPMX20_03912 - hypothetical protein, at 4,120,930 to 4,121,424 _03912 Position (kb) 4118 4119 4120Strain fitness (log2 ratio) -1 0 1 2at 4118.041 kb on + strandat 4118.045 kb on + strandat 4118.083 kb on + strandat 4120.054 kb on + strandat 4120.094 kb on + strandat 4120.096 kb on - strandat 4120.118 kb on - strandat 4120.129 kb on - strandat 4120.130 kb on + strand, within MPMX20_03910at 4120.130 kb on + strand, within MPMX20_03910at 4120.135 kb on + strand, within MPMX20_03910at 4120.148 kb on - strand, within MPMX20_03910at 4120.175 kb on + strand, within MPMX20_03910at 4120.175 kb on + strand, within MPMX20_03910at 4120.175 kb on + strand, within MPMX20_03910at 4120.175 kb on + strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.185 kb on + strand, within MPMX20_03910at 4120.322 kb on + strand, within MPMX20_03910at 4120.322 kb on + strand, within MPMX20_03910at 4120.330 kb on - strand, within MPMX20_03910at 4120.341 kb on + strand, within MPMX20_03910at 4120.342 kb on + strand, within MPMX20_03910at 4120.347 kb on + strand, within MPMX20_03910at 4120.354 kb on + strand, within MPMX20_03910at 4120.354 kb on + strand, within MPMX20_03910at 4120.356 kb on + strand, within MPMX20_03910at 4120.364 kb on - strand, within MPMX20_03910at 4120.369 kb on - strand, within MPMX20_03910at 4120.416 kb on + strand, within MPMX20_03910at 4120.427 kb on + strand, within MPMX20_03910at 4120.467 kb on + strand, within MPMX20_03910at 4120.538 kb on - strand, within MPMX20_03910at 4120.558 kb on + strandat 4120.584 kb on + strandat 4120.584 kb on + strandat 4120.592 kb on - strandat 4120.658 kb on + strandat 4120.666 kb on - strandat 4120.666 kb on - strandat 4120.888 kb on + strandat 4120.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; inner cut; 0.3% agar
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4,118,041 + -0.9
4,118,045 + -0.5
4,118,083 + +1.1
4,120,054 + -0.5
4,120,094 + -0.3
4,120,096 - +0.7
4,120,118 - +0.1
4,120,129 - -0.7
4,120,130 + MPMX20_03910 0.10 -1.0
4,120,130 + MPMX20_03910 0.10 -0.8
4,120,135 + MPMX20_03910 0.11 -0.3
4,120,148 - MPMX20_03910 0.13 -1.6
4,120,175 + MPMX20_03910 0.19 -1.0
4,120,175 + MPMX20_03910 0.19 +1.0
4,120,175 + MPMX20_03910 0.19 +0.1
4,120,175 + MPMX20_03910 0.19 -0.2
4,120,183 - MPMX20_03910 0.20 +0.9
4,120,183 - MPMX20_03910 0.20 -0.2
4,120,183 - MPMX20_03910 0.20 +0.9
4,120,183 - MPMX20_03910 0.20 -0.7
4,120,183 - MPMX20_03910 0.20 -0.9
4,120,185 + MPMX20_03910 0.21 -0.5
4,120,322 + MPMX20_03910 0.47 +0.3
4,120,322 + MPMX20_03910 0.47 +0.9
4,120,330 - MPMX20_03910 0.49 +1.4
4,120,341 + MPMX20_03910 0.51 -0.3
4,120,342 + MPMX20_03910 0.51 +0.2
4,120,347 + MPMX20_03910 0.52 +1.7
4,120,354 + MPMX20_03910 0.53 -1.0
4,120,354 + MPMX20_03910 0.53 +0.0
4,120,356 + MPMX20_03910 0.54 +2.1
4,120,364 - MPMX20_03910 0.55 -0.1
4,120,369 - MPMX20_03910 0.56 +0.4
4,120,416 + MPMX20_03910 0.65 -0.2
4,120,427 + MPMX20_03910 0.67 +0.1
4,120,467 + MPMX20_03910 0.75 +0.1
4,120,538 - MPMX20_03910 0.89 -0.0
4,120,558 + -0.9
4,120,584 + +0.4
4,120,584 + -0.4
4,120,592 - -1.3
4,120,658 + +0.1
4,120,666 - -0.2
4,120,666 - +0.1
4,120,888 + +0.1
4,120,966 + -0.7

Or see this region's nucleotide sequence