Experiment: Motility test in 1X LB; 1 day; inner cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03908 and MPMX20_03909 are separated by 150 nucleotides MPMX20_03909 and MPMX20_03910 are separated by 84 nucleotides MPMX20_03910 and MPMX20_03911 are separated by 112 nucleotides MPMX20_03911 and MPMX20_03912 are separated by 145 nucleotides
MPMX20_03908: MPMX20_03908 - DNA primase, at 4,116,250 to 4,117,995
_03908
MPMX20_03909: MPMX20_03909 - RNA polymerase sigma factor RpoD, at 4,118,146 to 4,119,993
_03909
MPMX20_03910: MPMX20_03910 - G/U mismatch-specific DNA glycosylase, at 4,120,078 to 4,120,596
_03910
MPMX20_03911: MPMX20_03911 - tRNA-Met, at 4,120,709 to 4,120,784
_03911
MPMX20_03912: MPMX20_03912 - hypothetical protein, at 4,120,930 to 4,121,424
_03912
Position (kb)
4118
4119
4120 Strain fitness (log2 ratio)
-1
0
1
2 at 4118.041 kb on + strand at 4118.045 kb on + strand at 4118.083 kb on + strand at 4120.054 kb on + strand at 4120.094 kb on + strand at 4120.096 kb on - strand at 4120.118 kb on - strand at 4120.129 kb on - strand at 4120.130 kb on + strand, within MPMX20_03910 at 4120.130 kb on + strand, within MPMX20_03910 at 4120.135 kb on + strand, within MPMX20_03910 at 4120.148 kb on - strand, within MPMX20_03910 at 4120.175 kb on + strand, within MPMX20_03910 at 4120.175 kb on + strand, within MPMX20_03910 at 4120.175 kb on + strand, within MPMX20_03910 at 4120.175 kb on + strand, within MPMX20_03910 at 4120.183 kb on - strand, within MPMX20_03910 at 4120.183 kb on - strand, within MPMX20_03910 at 4120.183 kb on - strand, within MPMX20_03910 at 4120.183 kb on - strand, within MPMX20_03910 at 4120.183 kb on - strand, within MPMX20_03910 at 4120.185 kb on + strand, within MPMX20_03910 at 4120.322 kb on + strand, within MPMX20_03910 at 4120.322 kb on + strand, within MPMX20_03910 at 4120.330 kb on - strand, within MPMX20_03910 at 4120.341 kb on + strand, within MPMX20_03910 at 4120.342 kb on + strand, within MPMX20_03910 at 4120.347 kb on + strand, within MPMX20_03910 at 4120.354 kb on + strand, within MPMX20_03910 at 4120.354 kb on + strand, within MPMX20_03910 at 4120.356 kb on + strand, within MPMX20_03910 at 4120.364 kb on - strand, within MPMX20_03910 at 4120.369 kb on - strand, within MPMX20_03910 at 4120.416 kb on + strand, within MPMX20_03910 at 4120.427 kb on + strand, within MPMX20_03910 at 4120.467 kb on + strand, within MPMX20_03910 at 4120.538 kb on - strand, within MPMX20_03910 at 4120.558 kb on + strand at 4120.584 kb on + strand at 4120.584 kb on + strand at 4120.592 kb on - strand at 4120.658 kb on + strand at 4120.666 kb on - strand at 4120.666 kb on - strand at 4120.888 kb on + strand at 4120.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; inner cut; 0.3% agar remove 4,118,041 + -0.9 4,118,045 + -0.5 4,118,083 + +1.1 4,120,054 + -0.5 4,120,094 + -0.3 4,120,096 - +0.7 4,120,118 - +0.1 4,120,129 - -0.7 4,120,130 + MPMX20_03910 0.10 -1.0 4,120,130 + MPMX20_03910 0.10 -0.8 4,120,135 + MPMX20_03910 0.11 -0.3 4,120,148 - MPMX20_03910 0.13 -1.6 4,120,175 + MPMX20_03910 0.19 -1.0 4,120,175 + MPMX20_03910 0.19 +1.0 4,120,175 + MPMX20_03910 0.19 +0.1 4,120,175 + MPMX20_03910 0.19 -0.2 4,120,183 - MPMX20_03910 0.20 +0.9 4,120,183 - MPMX20_03910 0.20 -0.2 4,120,183 - MPMX20_03910 0.20 +0.9 4,120,183 - MPMX20_03910 0.20 -0.7 4,120,183 - MPMX20_03910 0.20 -0.9 4,120,185 + MPMX20_03910 0.21 -0.5 4,120,322 + MPMX20_03910 0.47 +0.3 4,120,322 + MPMX20_03910 0.47 +0.9 4,120,330 - MPMX20_03910 0.49 +1.4 4,120,341 + MPMX20_03910 0.51 -0.3 4,120,342 + MPMX20_03910 0.51 +0.2 4,120,347 + MPMX20_03910 0.52 +1.7 4,120,354 + MPMX20_03910 0.53 -1.0 4,120,354 + MPMX20_03910 0.53 +0.0 4,120,356 + MPMX20_03910 0.54 +2.1 4,120,364 - MPMX20_03910 0.55 -0.1 4,120,369 - MPMX20_03910 0.56 +0.4 4,120,416 + MPMX20_03910 0.65 -0.2 4,120,427 + MPMX20_03910 0.67 +0.1 4,120,467 + MPMX20_03910 0.75 +0.1 4,120,538 - MPMX20_03910 0.89 -0.0 4,120,558 + -0.9 4,120,584 + +0.4 4,120,584 + -0.4 4,120,592 - -1.3 4,120,658 + +0.1 4,120,666 - -0.2 4,120,666 - +0.1 4,120,888 + +0.1 4,120,966 + -0.7
Or see this region's nucleotide sequence