Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02944

Experiment: Motility test in 1X LB; 1 day; inner cut; 0.3% agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02942 and MPMX20_02943 overlap by 4 nucleotidesMPMX20_02943 and MPMX20_02944 are separated by 2 nucleotidesMPMX20_02944 and MPMX20_02945 overlap by 1 nucleotidesMPMX20_02945 and MPMX20_02946 are separated by 9 nucleotides MPMX20_02942: MPMX20_02942 - Flagellar motor switch protein FliM, at 3,071,959 to 3,072,963 _02942 MPMX20_02943: MPMX20_02943 - Flagellar motor switch protein FliN, at 3,072,960 to 3,073,373 _02943 MPMX20_02944: MPMX20_02944 - Flagellar protein FliO, at 3,073,376 to 3,073,750 _02944 MPMX20_02945: MPMX20_02945 - Flagellar biosynthetic protein FliP, at 3,073,750 to 3,074,487 _02945 MPMX20_02946: MPMX20_02946 - Flagellar biosynthetic protein FliQ, at 3,074,497 to 3,074,766 _02946 Position (kb) 3073 3074Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3072.392 kb on + strand, within MPMX20_02942at 3072.401 kb on + strand, within MPMX20_02942at 3072.401 kb on + strand, within MPMX20_02942at 3072.419 kb on - strand, within MPMX20_02942at 3072.437 kb on - strand, within MPMX20_02942at 3072.455 kb on - strand, within MPMX20_02942at 3072.537 kb on - strand, within MPMX20_02942at 3072.548 kb on + strand, within MPMX20_02942at 3072.586 kb on + strand, within MPMX20_02942at 3072.608 kb on - strand, within MPMX20_02942at 3072.635 kb on - strand, within MPMX20_02942at 3072.688 kb on - strand, within MPMX20_02942at 3072.726 kb on + strand, within MPMX20_02942at 3072.859 kb on - strand, within MPMX20_02942at 3072.944 kb on + strandat 3072.954 kb on + strandat 3072.962 kb on - strandat 3072.999 kb on + strandat 3072.999 kb on + strandat 3073.153 kb on + strand, within MPMX20_02943at 3073.161 kb on - strand, within MPMX20_02943at 3073.180 kb on + strand, within MPMX20_02943at 3073.180 kb on + strand, within MPMX20_02943at 3073.210 kb on + strand, within MPMX20_02943at 3073.218 kb on - strand, within MPMX20_02943at 3073.218 kb on - strand, within MPMX20_02943at 3073.272 kb on - strand, within MPMX20_02943at 3073.278 kb on + strand, within MPMX20_02943at 3073.278 kb on + strand, within MPMX20_02943at 3073.283 kb on + strand, within MPMX20_02943at 3073.283 kb on + strand, within MPMX20_02943at 3073.283 kb on + strand, within MPMX20_02943at 3073.283 kb on + strand, within MPMX20_02943at 3073.291 kb on - strand, within MPMX20_02943at 3073.291 kb on - strand, within MPMX20_02943at 3073.291 kb on - strand, within MPMX20_02943at 3073.360 kb on - strandat 3073.397 kb on + strandat 3073.410 kb on - strandat 3073.414 kb on + strand, within MPMX20_02944at 3073.424 kb on + strand, within MPMX20_02944at 3073.424 kb on + strand, within MPMX20_02944at 3073.427 kb on - strand, within MPMX20_02944at 3073.427 kb on - strand, within MPMX20_02944at 3073.435 kb on + strand, within MPMX20_02944at 3073.438 kb on - strand, within MPMX20_02944at 3073.487 kb on - strand, within MPMX20_02944at 3073.510 kb on - strand, within MPMX20_02944at 3073.533 kb on + strand, within MPMX20_02944at 3073.535 kb on + strand, within MPMX20_02944at 3073.559 kb on - strand, within MPMX20_02944at 3073.563 kb on + strand, within MPMX20_02944at 3073.565 kb on - strand, within MPMX20_02944at 3073.607 kb on - strand, within MPMX20_02944at 3073.618 kb on - strand, within MPMX20_02944at 3073.618 kb on - strand, within MPMX20_02944at 3073.720 kb on - strandat 3073.827 kb on + strand, within MPMX20_02945at 3073.827 kb on + strand, within MPMX20_02945at 3073.831 kb on - strand, within MPMX20_02945at 3073.835 kb on - strand, within MPMX20_02945at 3073.835 kb on - strand, within MPMX20_02945at 3073.843 kb on - strand, within MPMX20_02945at 3073.860 kb on - strand, within MPMX20_02945at 3073.870 kb on - strand, within MPMX20_02945at 3073.974 kb on - strand, within MPMX20_02945at 3073.978 kb on + strand, within MPMX20_02945at 3073.991 kb on - strand, within MPMX20_02945at 3074.014 kb on + strand, within MPMX20_02945at 3074.014 kb on - strand, within MPMX20_02945at 3074.019 kb on + strand, within MPMX20_02945at 3074.070 kb on + strand, within MPMX20_02945at 3074.070 kb on + strand, within MPMX20_02945at 3074.078 kb on - strand, within MPMX20_02945at 3074.081 kb on + strand, within MPMX20_02945at 3074.130 kb on + strand, within MPMX20_02945at 3074.164 kb on - strand, within MPMX20_02945at 3074.208 kb on + strand, within MPMX20_02945at 3074.216 kb on - strand, within MPMX20_02945at 3074.216 kb on - strand, within MPMX20_02945at 3074.216 kb on - strand, within MPMX20_02945at 3074.260 kb on - strand, within MPMX20_02945at 3074.333 kb on + strand, within MPMX20_02945at 3074.354 kb on + strand, within MPMX20_02945at 3074.396 kb on + strand, within MPMX20_02945at 3074.396 kb on + strand, within MPMX20_02945at 3074.401 kb on + strand, within MPMX20_02945at 3074.404 kb on - strand, within MPMX20_02945at 3074.404 kb on - strand, within MPMX20_02945at 3074.409 kb on + strand, within MPMX20_02945at 3074.431 kb on - strandat 3074.459 kb on + strandat 3074.509 kb on - strandat 3074.509 kb on - strandat 3074.595 kb on + strand, within MPMX20_02946at 3074.603 kb on - strand, within MPMX20_02946at 3074.625 kb on + strand, within MPMX20_02946at 3074.742 kb on - strandat 3074.742 kb on - strandat 3074.748 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; inner cut; 0.3% agar
remove
3,072,392 + MPMX20_02942 0.43 +1.2
3,072,401 + MPMX20_02942 0.44 -1.6
3,072,401 + MPMX20_02942 0.44 -1.2
3,072,419 - MPMX20_02942 0.46 -1.2
3,072,437 - MPMX20_02942 0.48 -1.6
3,072,455 - MPMX20_02942 0.49 -3.5
3,072,537 - MPMX20_02942 0.58 -1.3
3,072,548 + MPMX20_02942 0.59 +0.0
3,072,586 + MPMX20_02942 0.62 -2.1
3,072,608 - MPMX20_02942 0.65 -0.5
3,072,635 - MPMX20_02942 0.67 -1.2
3,072,688 - MPMX20_02942 0.73 -0.6
3,072,726 + MPMX20_02942 0.76 +1.0
3,072,859 - MPMX20_02942 0.90 -1.6
3,072,944 + -0.3
3,072,954 + -1.3
3,072,962 - -1.6
3,072,999 + -0.8
3,072,999 + -0.4
3,073,153 + MPMX20_02943 0.47 -1.1
3,073,161 - MPMX20_02943 0.49 -0.4
3,073,180 + MPMX20_02943 0.53 -0.2
3,073,180 + MPMX20_02943 0.53 -0.4
3,073,210 + MPMX20_02943 0.60 -0.4
3,073,218 - MPMX20_02943 0.62 -0.2
3,073,218 - MPMX20_02943 0.62 -0.7
3,073,272 - MPMX20_02943 0.75 -1.7
3,073,278 + MPMX20_02943 0.77 -1.0
3,073,278 + MPMX20_02943 0.77 -1.7
3,073,283 + MPMX20_02943 0.78 -1.2
3,073,283 + MPMX20_02943 0.78 +0.8
3,073,283 + MPMX20_02943 0.78 -2.5
3,073,283 + MPMX20_02943 0.78 +0.5
3,073,291 - MPMX20_02943 0.80 -2.4
3,073,291 - MPMX20_02943 0.80 -3.2
3,073,291 - MPMX20_02943 0.80 -0.1
3,073,360 - +0.1
3,073,397 + -1.4
3,073,410 - -0.8
3,073,414 + MPMX20_02944 0.10 -0.0
3,073,424 + MPMX20_02944 0.13 -0.5
3,073,424 + MPMX20_02944 0.13 -0.8
3,073,427 - MPMX20_02944 0.14 +1.2
3,073,427 - MPMX20_02944 0.14 -2.2
3,073,435 + MPMX20_02944 0.16 -1.5
3,073,438 - MPMX20_02944 0.17 -1.2
3,073,487 - MPMX20_02944 0.30 -2.0
3,073,510 - MPMX20_02944 0.36 -1.3
3,073,533 + MPMX20_02944 0.42 -2.2
3,073,535 + MPMX20_02944 0.42 -0.9
3,073,559 - MPMX20_02944 0.49 -1.4
3,073,563 + MPMX20_02944 0.50 -1.8
3,073,565 - MPMX20_02944 0.50 -1.3
3,073,607 - MPMX20_02944 0.62 -2.5
3,073,618 - MPMX20_02944 0.65 -1.1
3,073,618 - MPMX20_02944 0.65 -1.2
3,073,720 - -3.8
3,073,827 + MPMX20_02945 0.10 -0.9
3,073,827 + MPMX20_02945 0.10 -0.8
3,073,831 - MPMX20_02945 0.11 -1.6
3,073,835 - MPMX20_02945 0.12 -3.4
3,073,835 - MPMX20_02945 0.12 -0.1
3,073,843 - MPMX20_02945 0.13 -2.0
3,073,860 - MPMX20_02945 0.15 +0.2
3,073,870 - MPMX20_02945 0.16 -1.1
3,073,974 - MPMX20_02945 0.30 -1.9
3,073,978 + MPMX20_02945 0.31 -2.8
3,073,991 - MPMX20_02945 0.33 -1.0
3,074,014 + MPMX20_02945 0.36 -0.6
3,074,014 - MPMX20_02945 0.36 -2.2
3,074,019 + MPMX20_02945 0.36 -0.8
3,074,070 + MPMX20_02945 0.43 -0.4
3,074,070 + MPMX20_02945 0.43 -0.8
3,074,078 - MPMX20_02945 0.44 -1.6
3,074,081 + MPMX20_02945 0.45 -0.4
3,074,130 + MPMX20_02945 0.51 +0.2
3,074,164 - MPMX20_02945 0.56 -4.6
3,074,208 + MPMX20_02945 0.62 -0.3
3,074,216 - MPMX20_02945 0.63 -0.9
3,074,216 - MPMX20_02945 0.63 -0.8
3,074,216 - MPMX20_02945 0.63 -1.7
3,074,260 - MPMX20_02945 0.69 -1.3
3,074,333 + MPMX20_02945 0.79 -2.2
3,074,354 + MPMX20_02945 0.82 -1.1
3,074,396 + MPMX20_02945 0.88 -0.3
3,074,396 + MPMX20_02945 0.88 +0.6
3,074,401 + MPMX20_02945 0.88 -0.0
3,074,404 - MPMX20_02945 0.89 -1.1
3,074,404 - MPMX20_02945 0.89 -0.2
3,074,409 + MPMX20_02945 0.89 -2.4
3,074,431 - -2.0
3,074,459 + -0.2
3,074,509 - -0.2
3,074,509 - -1.2
3,074,595 + MPMX20_02946 0.36 -1.5
3,074,603 - MPMX20_02946 0.39 -0.7
3,074,625 + MPMX20_02946 0.47 -2.7
3,074,742 - -1.4
3,074,742 - -0.8
3,074,748 + -0.7

Or see this region's nucleotide sequence