Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02846

Experiment: Motility test in 1X LB; 1 day; inner cut; 0.3% agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02844 and MPMX20_02845 are separated by 107 nucleotidesMPMX20_02845 and MPMX20_02846 are separated by 86 nucleotidesMPMX20_02846 and MPMX20_02847 are separated by 54 nucleotidesMPMX20_02847 and MPMX20_02848 are separated by 98 nucleotides MPMX20_02844: MPMX20_02844 - D-cysteine desulfhydrase, at 2,997,548 to 2,998,534 _02844 MPMX20_02845: MPMX20_02845 - L-cystine-binding protein FliY, at 2,998,642 to 2,999,442 _02845 MPMX20_02846: MPMX20_02846 - Regulator of sigma S factor FliZ, at 2,999,529 to 3,000,080 _02846 MPMX20_02847: MPMX20_02847 - RNA polymerase sigma factor FliA, at 3,000,135 to 3,000,854 _02847 MPMX20_02848: MPMX20_02848 - hypothetical protein, at 3,000,953 to 3,002,080 _02848 Position (kb) 2999 3000 3001Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2998.530 kb on + strandat 2998.538 kb on - strandat 2998.538 kb on - strandat 2998.538 kb on - strandat 2998.538 kb on - strandat 2998.540 kb on - strandat 2998.542 kb on + strandat 2998.551 kb on - strandat 2998.553 kb on + strandat 2998.553 kb on + strandat 2998.553 kb on + strandat 2998.557 kb on - strandat 2998.647 kb on - strandat 2998.653 kb on + strandat 2998.730 kb on + strand, within MPMX20_02845at 2998.744 kb on + strand, within MPMX20_02845at 2998.784 kb on - strand, within MPMX20_02845at 2998.803 kb on - strand, within MPMX20_02845at 2998.807 kb on - strand, within MPMX20_02845at 2998.833 kb on + strand, within MPMX20_02845at 2998.880 kb on + strand, within MPMX20_02845at 2998.911 kb on + strand, within MPMX20_02845at 2998.934 kb on - strand, within MPMX20_02845at 2998.936 kb on - strand, within MPMX20_02845at 2998.942 kb on - strand, within MPMX20_02845at 2998.949 kb on - strand, within MPMX20_02845at 2998.964 kb on - strand, within MPMX20_02845at 2998.967 kb on - strand, within MPMX20_02845at 2999.047 kb on - strand, within MPMX20_02845at 2999.069 kb on + strand, within MPMX20_02845at 2999.071 kb on + strand, within MPMX20_02845at 2999.086 kb on + strand, within MPMX20_02845at 2999.106 kb on + strand, within MPMX20_02845at 2999.106 kb on + strand, within MPMX20_02845at 2999.114 kb on - strand, within MPMX20_02845at 2999.114 kb on - strand, within MPMX20_02845at 2999.131 kb on - strand, within MPMX20_02845at 2999.145 kb on + strand, within MPMX20_02845at 2999.187 kb on + strand, within MPMX20_02845at 2999.289 kb on - strand, within MPMX20_02845at 2999.294 kb on - strand, within MPMX20_02845at 2999.303 kb on + strand, within MPMX20_02845at 2999.336 kb on - strand, within MPMX20_02845at 2999.378 kb on + strandat 2999.386 kb on - strandat 2999.393 kb on + strandat 2999.401 kb on - strandat 2999.405 kb on + strandat 2999.422 kb on + strandat 2999.422 kb on + strandat 2999.422 kb on + strandat 2999.422 kb on + strandat 2999.422 kb on + strandat 2999.430 kb on - strandat 2999.430 kb on - strandat 2999.474 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.495 kb on + strandat 2999.496 kb on + strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.503 kb on - strandat 2999.504 kb on + strandat 2999.553 kb on + strandat 2999.568 kb on - strandat 2999.605 kb on + strand, within MPMX20_02846at 2999.605 kb on + strand, within MPMX20_02846at 2999.605 kb on + strand, within MPMX20_02846at 2999.608 kb on - strand, within MPMX20_02846at 2999.613 kb on - strand, within MPMX20_02846at 2999.613 kb on - strand, within MPMX20_02846at 2999.613 kb on - strand, within MPMX20_02846at 2999.613 kb on - strand, within MPMX20_02846at 2999.613 kb on - strand, within MPMX20_02846at 2999.615 kb on + strand, within MPMX20_02846at 2999.615 kb on + strand, within MPMX20_02846at 2999.615 kb on + strand, within MPMX20_02846at 2999.628 kb on - strand, within MPMX20_02846at 2999.640 kb on + strand, within MPMX20_02846at 2999.648 kb on - strand, within MPMX20_02846at 2999.683 kb on + strand, within MPMX20_02846at 2999.685 kb on + strand, within MPMX20_02846at 2999.691 kb on - strand, within MPMX20_02846at 2999.691 kb on - strand, within MPMX20_02846at 2999.691 kb on - strand, within MPMX20_02846at 2999.720 kb on + strand, within MPMX20_02846at 2999.724 kb on - strand, within MPMX20_02846at 2999.744 kb on - strand, within MPMX20_02846at 2999.749 kb on - strand, within MPMX20_02846at 2999.757 kb on + strand, within MPMX20_02846at 2999.772 kb on - strand, within MPMX20_02846at 2999.778 kb on - strand, within MPMX20_02846at 2999.824 kb on - strand, within MPMX20_02846at 2999.829 kb on + strand, within MPMX20_02846at 2999.837 kb on - strand, within MPMX20_02846at 2999.839 kb on + strand, within MPMX20_02846at 2999.844 kb on + strand, within MPMX20_02846at 2999.844 kb on + strand, within MPMX20_02846at 2999.844 kb on + strand, within MPMX20_02846at 2999.882 kb on - strand, within MPMX20_02846at 2999.891 kb on + strand, within MPMX20_02846at 3000.031 kb on - strandat 3000.031 kb on - strandat 3000.040 kb on - strandat 3000.095 kb on + strandat 3000.134 kb on + strandat 3000.134 kb on + strandat 3000.141 kb on - strandat 3000.188 kb on - strandat 3000.202 kb on - strandat 3000.202 kb on - strandat 3000.210 kb on + strand, within MPMX20_02847at 3000.210 kb on + strand, within MPMX20_02847at 3000.220 kb on + strand, within MPMX20_02847at 3000.243 kb on - strand, within MPMX20_02847at 3000.269 kb on - strand, within MPMX20_02847at 3000.275 kb on - strand, within MPMX20_02847at 3000.286 kb on + strand, within MPMX20_02847at 3000.286 kb on + strand, within MPMX20_02847at 3000.286 kb on + strand, within MPMX20_02847at 3000.286 kb on + strand, within MPMX20_02847at 3000.294 kb on - strand, within MPMX20_02847at 3000.294 kb on - strand, within MPMX20_02847at 3000.294 kb on - strand, within MPMX20_02847at 3000.357 kb on - strand, within MPMX20_02847at 3000.370 kb on + strand, within MPMX20_02847at 3000.370 kb on + strand, within MPMX20_02847at 3000.380 kb on + strand, within MPMX20_02847at 3000.390 kb on + strand, within MPMX20_02847at 3000.393 kb on + strand, within MPMX20_02847at 3000.401 kb on - strand, within MPMX20_02847at 3000.421 kb on + strand, within MPMX20_02847at 3000.421 kb on + strand, within MPMX20_02847at 3000.421 kb on - strand, within MPMX20_02847at 3000.480 kb on + strand, within MPMX20_02847at 3000.539 kb on + strand, within MPMX20_02847at 3000.577 kb on + strand, within MPMX20_02847at 3000.580 kb on - strand, within MPMX20_02847at 3000.580 kb on - strand, within MPMX20_02847at 3000.582 kb on + strand, within MPMX20_02847at 3000.588 kb on - strand, within MPMX20_02847at 3000.633 kb on + strand, within MPMX20_02847at 3000.683 kb on + strand, within MPMX20_02847at 3000.723 kb on - strand, within MPMX20_02847at 3000.765 kb on + strand, within MPMX20_02847at 3000.765 kb on + strand, within MPMX20_02847at 3000.765 kb on + strand, within MPMX20_02847at 3000.772 kb on + strand, within MPMX20_02847at 3000.772 kb on + strand, within MPMX20_02847at 3000.773 kb on - strand, within MPMX20_02847at 3000.773 kb on - strand, within MPMX20_02847at 3000.773 kb on - strand, within MPMX20_02847at 3000.785 kb on + strandat 3000.791 kb on - strandat 3000.791 kb on - strandat 3000.793 kb on + strandat 3000.800 kb on - strandat 3000.813 kb on + strandat 3000.821 kb on + strandat 3000.830 kb on - strandat 3000.833 kb on + strandat 3000.838 kb on + strandat 3000.838 kb on + strandat 3000.838 kb on - strandat 3000.846 kb on - strandat 3000.852 kb on + strandat 3000.858 kb on + strandat 3000.858 kb on + strandat 3000.858 kb on + strandat 3000.863 kb on + strandat 3000.863 kb on + strandat 3000.863 kb on + strandat 3000.863 kb on + strandat 3000.863 kb on + strandat 3000.863 kb on + strandat 3000.863 kb on + strandat 3000.863 kb on + strandat 3000.866 kb on - strandat 3000.871 kb on - strandat 3000.871 kb on - strandat 3000.917 kb on - strandat 3000.920 kb on + strandat 3000.920 kb on + strandat 3000.920 kb on + strandat 3000.928 kb on - strandat 3000.928 kb on - strandat 3000.995 kb on - strandat 3001.004 kb on + strandat 3001.004 kb on + strandat 3001.004 kb on + strandat 3001.004 kb on + strandat 3001.009 kb on + strandat 3001.009 kb on + strandat 3001.009 kb on + strandat 3001.009 kb on + strandat 3001.012 kb on - strandat 3001.012 kb on - strandat 3001.012 kb on - strandat 3001.017 kb on - strandat 3001.017 kb on - strandat 3001.017 kb on - strandat 3001.017 kb on - strandat 3001.017 kb on - strandat 3001.017 kb on - strandat 3001.020 kb on + strandat 3001.021 kb on - strandat 3001.030 kb on + strandat 3001.037 kb on - strandat 3001.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; inner cut; 0.3% agar
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2,998,530 + +0.4
2,998,538 - -0.5
2,998,538 - +0.3
2,998,538 - -0.3
2,998,538 - -0.4
2,998,540 - -0.8
2,998,542 + +0.3
2,998,551 - -0.8
2,998,553 + +1.8
2,998,553 + -0.4
2,998,553 + -0.4
2,998,557 - +1.5
2,998,647 - +1.5
2,998,653 + +1.2
2,998,730 + MPMX20_02845 0.11 +0.8
2,998,744 + MPMX20_02845 0.13 +0.2
2,998,784 - MPMX20_02845 0.18 +2.0
2,998,803 - MPMX20_02845 0.20 +0.6
2,998,807 - MPMX20_02845 0.21 -0.0
2,998,833 + MPMX20_02845 0.24 +0.2
2,998,880 + MPMX20_02845 0.30 +0.2
2,998,911 + MPMX20_02845 0.34 +0.5
2,998,934 - MPMX20_02845 0.36 +0.2
2,998,936 - MPMX20_02845 0.37 -0.9
2,998,942 - MPMX20_02845 0.37 +0.0
2,998,949 - MPMX20_02845 0.38 -1.1
2,998,964 - MPMX20_02845 0.40 +0.9
2,998,967 - MPMX20_02845 0.41 +0.3
2,999,047 - MPMX20_02845 0.51 +0.4
2,999,069 + MPMX20_02845 0.53 +1.0
2,999,071 + MPMX20_02845 0.54 -0.1
2,999,086 + MPMX20_02845 0.55 -0.8
2,999,106 + MPMX20_02845 0.58 +0.3
2,999,106 + MPMX20_02845 0.58 -1.2
2,999,114 - MPMX20_02845 0.59 +0.7
2,999,114 - MPMX20_02845 0.59 +0.8
2,999,131 - MPMX20_02845 0.61 +0.4
2,999,145 + MPMX20_02845 0.63 -1.8
2,999,187 + MPMX20_02845 0.68 -0.0
2,999,289 - MPMX20_02845 0.81 -1.8
2,999,294 - MPMX20_02845 0.81 +0.6
2,999,303 + MPMX20_02845 0.83 -0.1
2,999,336 - MPMX20_02845 0.87 +0.9
2,999,378 + +1.8
2,999,386 - -0.4
2,999,393 + +0.7
2,999,401 - +0.1
2,999,405 + -0.7
2,999,422 + +0.5
2,999,422 + +0.3
2,999,422 + +0.8
2,999,422 + +1.4
2,999,422 + +0.5
2,999,430 - -0.7
2,999,430 - +0.7
2,999,474 + -0.4
2,999,495 + +1.0
2,999,495 + +0.7
2,999,495 + -1.3
2,999,495 + -0.7
2,999,495 + +1.8
2,999,495 + -0.0
2,999,495 + -0.5
2,999,495 + -0.2
2,999,495 + -0.6
2,999,495 + +0.4
2,999,495 + -0.2
2,999,496 + +0.2
2,999,503 - +0.4
2,999,503 - +0.4
2,999,503 - +1.9
2,999,503 - +0.3
2,999,503 - +0.2
2,999,503 - -0.7
2,999,503 - +1.7
2,999,503 - +1.5
2,999,503 - -0.1
2,999,503 - -0.1
2,999,503 - +0.5
2,999,503 - -1.1
2,999,503 - +1.6
2,999,504 + -0.5
2,999,553 + +2.2
2,999,568 - +1.2
2,999,605 + MPMX20_02846 0.14 -0.1
2,999,605 + MPMX20_02846 0.14 +0.2
2,999,605 + MPMX20_02846 0.14 -0.4
2,999,608 - MPMX20_02846 0.14 +0.7
2,999,613 - MPMX20_02846 0.15 +0.4
2,999,613 - MPMX20_02846 0.15 +0.6
2,999,613 - MPMX20_02846 0.15 -1.1
2,999,613 - MPMX20_02846 0.15 -0.7
2,999,613 - MPMX20_02846 0.15 +0.1
2,999,615 + MPMX20_02846 0.16 -0.4
2,999,615 + MPMX20_02846 0.16 +0.4
2,999,615 + MPMX20_02846 0.16 +0.3
2,999,628 - MPMX20_02846 0.18 -2.0
2,999,640 + MPMX20_02846 0.20 -2.5
2,999,648 - MPMX20_02846 0.22 -0.8
2,999,683 + MPMX20_02846 0.28 -1.4
2,999,685 + MPMX20_02846 0.28 +2.2
2,999,691 - MPMX20_02846 0.29 -0.0
2,999,691 - MPMX20_02846 0.29 +0.4
2,999,691 - MPMX20_02846 0.29 -1.7
2,999,720 + MPMX20_02846 0.35 -0.6
2,999,724 - MPMX20_02846 0.35 +1.2
2,999,744 - MPMX20_02846 0.39 -1.3
2,999,749 - MPMX20_02846 0.40 -0.5
2,999,757 + MPMX20_02846 0.41 +2.2
2,999,772 - MPMX20_02846 0.44 -0.4
2,999,778 - MPMX20_02846 0.45 +0.4
2,999,824 - MPMX20_02846 0.53 -1.2
2,999,829 + MPMX20_02846 0.54 -1.0
2,999,837 - MPMX20_02846 0.56 +0.8
2,999,839 + MPMX20_02846 0.56 +0.0
2,999,844 + MPMX20_02846 0.57 -0.9
2,999,844 + MPMX20_02846 0.57 -0.4
2,999,844 + MPMX20_02846 0.57 -0.4
2,999,882 - MPMX20_02846 0.64 -0.4
2,999,891 + MPMX20_02846 0.66 -0.6
3,000,031 - -0.7
3,000,031 - +0.6
3,000,040 - +0.5
3,000,095 + -2.0
3,000,134 + -0.0
3,000,134 + -0.4
3,000,141 - -1.0
3,000,188 - +1.2
3,000,202 - -1.3
3,000,202 - -1.6
3,000,210 + MPMX20_02847 0.10 -0.3
3,000,210 + MPMX20_02847 0.10 -2.0
3,000,220 + MPMX20_02847 0.12 -0.9
3,000,243 - MPMX20_02847 0.15 -1.3
3,000,269 - MPMX20_02847 0.19 -1.1
3,000,275 - MPMX20_02847 0.19 -0.8
3,000,286 + MPMX20_02847 0.21 -1.4
3,000,286 + MPMX20_02847 0.21 -1.6
3,000,286 + MPMX20_02847 0.21 -1.6
3,000,286 + MPMX20_02847 0.21 +1.2
3,000,294 - MPMX20_02847 0.22 -0.6
3,000,294 - MPMX20_02847 0.22 -2.5
3,000,294 - MPMX20_02847 0.22 -1.4
3,000,357 - MPMX20_02847 0.31 -1.3
3,000,370 + MPMX20_02847 0.33 -1.7
3,000,370 + MPMX20_02847 0.33 -1.6
3,000,380 + MPMX20_02847 0.34 -2.1
3,000,390 + MPMX20_02847 0.35 -0.9
3,000,393 + MPMX20_02847 0.36 -0.8
3,000,401 - MPMX20_02847 0.37 -0.8
3,000,421 + MPMX20_02847 0.40 -1.6
3,000,421 + MPMX20_02847 0.40 -1.5
3,000,421 - MPMX20_02847 0.40 -1.0
3,000,480 + MPMX20_02847 0.48 -1.3
3,000,539 + MPMX20_02847 0.56 -0.0
3,000,577 + MPMX20_02847 0.61 +0.1
3,000,580 - MPMX20_02847 0.62 -1.7
3,000,580 - MPMX20_02847 0.62 -0.6
3,000,582 + MPMX20_02847 0.62 -1.4
3,000,588 - MPMX20_02847 0.63 -0.1
3,000,633 + MPMX20_02847 0.69 -2.3
3,000,683 + MPMX20_02847 0.76 -2.2
3,000,723 - MPMX20_02847 0.82 +1.8
3,000,765 + MPMX20_02847 0.88 -0.8
3,000,765 + MPMX20_02847 0.88 -0.0
3,000,765 + MPMX20_02847 0.88 -0.4
3,000,772 + MPMX20_02847 0.88 -2.0
3,000,772 + MPMX20_02847 0.88 -0.9
3,000,773 - MPMX20_02847 0.89 -0.4
3,000,773 - MPMX20_02847 0.89 -2.1
3,000,773 - MPMX20_02847 0.89 -1.0
3,000,785 + -0.9
3,000,791 - -1.0
3,000,791 - -0.1
3,000,793 + -3.4
3,000,800 - -2.1
3,000,813 + -1.3
3,000,821 + -0.7
3,000,830 - +0.2
3,000,833 + -1.6
3,000,838 + -1.6
3,000,838 + -2.6
3,000,838 - -2.1
3,000,846 - -2.4
3,000,852 + -2.6
3,000,858 + -1.2
3,000,858 + -1.7
3,000,858 + -1.3
3,000,863 + -1.0
3,000,863 + -1.4
3,000,863 + -1.2
3,000,863 + -0.2
3,000,863 + -1.0
3,000,863 + -1.3
3,000,863 + -0.9
3,000,863 + -0.2
3,000,866 - -0.4
3,000,871 - -0.4
3,000,871 - -1.1
3,000,917 - -1.5
3,000,920 + -2.0
3,000,920 + -1.4
3,000,920 + -2.4
3,000,928 - -0.5
3,000,928 - -2.3
3,000,995 - +0.4
3,001,004 + -0.4
3,001,004 + -1.1
3,001,004 + -0.2
3,001,004 + +0.2
3,001,009 + -1.2
3,001,009 + -0.8
3,001,009 + +0.4
3,001,009 + +0.2
3,001,012 - +0.4
3,001,012 - -0.7
3,001,012 - +1.5
3,001,017 - -0.1
3,001,017 - -0.0
3,001,017 - +1.2
3,001,017 - -0.8
3,001,017 - -0.4
3,001,017 - -0.0
3,001,020 + -1.0
3,001,021 - +1.4
3,001,030 + -0.5
3,001,037 - +0.8
3,001,050 - +0.0

Or see this region's nucleotide sequence