Experiment: Motility test in 1X LB; 1 day; inner cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02844 and MPMX20_02845 are separated by 107 nucleotides MPMX20_02845 and MPMX20_02846 are separated by 86 nucleotides MPMX20_02846 and MPMX20_02847 are separated by 54 nucleotides MPMX20_02847 and MPMX20_02848 are separated by 98 nucleotides
MPMX20_02844: MPMX20_02844 - D-cysteine desulfhydrase, at 2,997,548 to 2,998,534
_02844
MPMX20_02845: MPMX20_02845 - L-cystine-binding protein FliY, at 2,998,642 to 2,999,442
_02845
MPMX20_02846: MPMX20_02846 - Regulator of sigma S factor FliZ, at 2,999,529 to 3,000,080
_02846
MPMX20_02847: MPMX20_02847 - RNA polymerase sigma factor FliA, at 3,000,135 to 3,000,854
_02847
MPMX20_02848: MPMX20_02848 - hypothetical protein, at 3,000,953 to 3,002,080
_02848
Position (kb)
2999
3000
3001 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2998.530 kb on + strand at 2998.538 kb on - strand at 2998.538 kb on - strand at 2998.538 kb on - strand at 2998.538 kb on - strand at 2998.540 kb on - strand at 2998.542 kb on + strand at 2998.551 kb on - strand at 2998.553 kb on + strand at 2998.553 kb on + strand at 2998.553 kb on + strand at 2998.557 kb on - strand at 2998.647 kb on - strand at 2998.653 kb on + strand at 2998.730 kb on + strand, within MPMX20_02845 at 2998.744 kb on + strand, within MPMX20_02845 at 2998.784 kb on - strand, within MPMX20_02845 at 2998.803 kb on - strand, within MPMX20_02845 at 2998.807 kb on - strand, within MPMX20_02845 at 2998.833 kb on + strand, within MPMX20_02845 at 2998.880 kb on + strand, within MPMX20_02845 at 2998.911 kb on + strand, within MPMX20_02845 at 2998.934 kb on - strand, within MPMX20_02845 at 2998.936 kb on - strand, within MPMX20_02845 at 2998.942 kb on - strand, within MPMX20_02845 at 2998.949 kb on - strand, within MPMX20_02845 at 2998.964 kb on - strand, within MPMX20_02845 at 2998.967 kb on - strand, within MPMX20_02845 at 2999.047 kb on - strand, within MPMX20_02845 at 2999.069 kb on + strand, within MPMX20_02845 at 2999.071 kb on + strand, within MPMX20_02845 at 2999.086 kb on + strand, within MPMX20_02845 at 2999.106 kb on + strand, within MPMX20_02845 at 2999.106 kb on + strand, within MPMX20_02845 at 2999.114 kb on - strand, within MPMX20_02845 at 2999.114 kb on - strand, within MPMX20_02845 at 2999.131 kb on - strand, within MPMX20_02845 at 2999.145 kb on + strand, within MPMX20_02845 at 2999.187 kb on + strand, within MPMX20_02845 at 2999.289 kb on - strand, within MPMX20_02845 at 2999.294 kb on - strand, within MPMX20_02845 at 2999.303 kb on + strand, within MPMX20_02845 at 2999.336 kb on - strand, within MPMX20_02845 at 2999.378 kb on + strand at 2999.386 kb on - strand at 2999.393 kb on + strand at 2999.401 kb on - strand at 2999.405 kb on + strand at 2999.422 kb on + strand at 2999.422 kb on + strand at 2999.422 kb on + strand at 2999.422 kb on + strand at 2999.422 kb on + strand at 2999.430 kb on - strand at 2999.430 kb on - strand at 2999.474 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.495 kb on + strand at 2999.496 kb on + strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.503 kb on - strand at 2999.504 kb on + strand at 2999.553 kb on + strand at 2999.568 kb on - strand at 2999.605 kb on + strand, within MPMX20_02846 at 2999.605 kb on + strand, within MPMX20_02846 at 2999.605 kb on + strand, within MPMX20_02846 at 2999.608 kb on - strand, within MPMX20_02846 at 2999.613 kb on - strand, within MPMX20_02846 at 2999.613 kb on - strand, within MPMX20_02846 at 2999.613 kb on - strand, within MPMX20_02846 at 2999.613 kb on - strand, within MPMX20_02846 at 2999.613 kb on - strand, within MPMX20_02846 at 2999.615 kb on + strand, within MPMX20_02846 at 2999.615 kb on + strand, within MPMX20_02846 at 2999.615 kb on + strand, within MPMX20_02846 at 2999.628 kb on - strand, within MPMX20_02846 at 2999.640 kb on + strand, within MPMX20_02846 at 2999.648 kb on - strand, within MPMX20_02846 at 2999.683 kb on + strand, within MPMX20_02846 at 2999.685 kb on + strand, within MPMX20_02846 at 2999.691 kb on - strand, within MPMX20_02846 at 2999.691 kb on - strand, within MPMX20_02846 at 2999.691 kb on - strand, within MPMX20_02846 at 2999.720 kb on + strand, within MPMX20_02846 at 2999.724 kb on - strand, within MPMX20_02846 at 2999.744 kb on - strand, within MPMX20_02846 at 2999.749 kb on - strand, within MPMX20_02846 at 2999.757 kb on + strand, within MPMX20_02846 at 2999.772 kb on - strand, within MPMX20_02846 at 2999.778 kb on - strand, within MPMX20_02846 at 2999.824 kb on - strand, within MPMX20_02846 at 2999.829 kb on + strand, within MPMX20_02846 at 2999.837 kb on - strand, within MPMX20_02846 at 2999.839 kb on + strand, within MPMX20_02846 at 2999.844 kb on + strand, within MPMX20_02846 at 2999.844 kb on + strand, within MPMX20_02846 at 2999.844 kb on + strand, within MPMX20_02846 at 2999.882 kb on - strand, within MPMX20_02846 at 2999.891 kb on + strand, within MPMX20_02846 at 3000.031 kb on - strand at 3000.031 kb on - strand at 3000.040 kb on - strand at 3000.095 kb on + strand at 3000.134 kb on + strand at 3000.134 kb on + strand at 3000.141 kb on - strand at 3000.188 kb on - strand at 3000.202 kb on - strand at 3000.202 kb on - strand at 3000.210 kb on + strand, within MPMX20_02847 at 3000.210 kb on + strand, within MPMX20_02847 at 3000.220 kb on + strand, within MPMX20_02847 at 3000.243 kb on - strand, within MPMX20_02847 at 3000.269 kb on - strand, within MPMX20_02847 at 3000.275 kb on - strand, within MPMX20_02847 at 3000.286 kb on + strand, within MPMX20_02847 at 3000.286 kb on + strand, within MPMX20_02847 at 3000.286 kb on + strand, within MPMX20_02847 at 3000.286 kb on + strand, within MPMX20_02847 at 3000.294 kb on - strand, within MPMX20_02847 at 3000.294 kb on - strand, within MPMX20_02847 at 3000.294 kb on - strand, within MPMX20_02847 at 3000.357 kb on - strand, within MPMX20_02847 at 3000.370 kb on + strand, within MPMX20_02847 at 3000.370 kb on + strand, within MPMX20_02847 at 3000.380 kb on + strand, within MPMX20_02847 at 3000.390 kb on + strand, within MPMX20_02847 at 3000.393 kb on + strand, within MPMX20_02847 at 3000.401 kb on - strand, within MPMX20_02847 at 3000.421 kb on + strand, within MPMX20_02847 at 3000.421 kb on + strand, within MPMX20_02847 at 3000.421 kb on - strand, within MPMX20_02847 at 3000.480 kb on + strand, within MPMX20_02847 at 3000.539 kb on + strand, within MPMX20_02847 at 3000.577 kb on + strand, within MPMX20_02847 at 3000.580 kb on - strand, within MPMX20_02847 at 3000.580 kb on - strand, within MPMX20_02847 at 3000.582 kb on + strand, within MPMX20_02847 at 3000.588 kb on - strand, within MPMX20_02847 at 3000.633 kb on + strand, within MPMX20_02847 at 3000.683 kb on + strand, within MPMX20_02847 at 3000.723 kb on - strand, within MPMX20_02847 at 3000.765 kb on + strand, within MPMX20_02847 at 3000.765 kb on + strand, within MPMX20_02847 at 3000.765 kb on + strand, within MPMX20_02847 at 3000.772 kb on + strand, within MPMX20_02847 at 3000.772 kb on + strand, within MPMX20_02847 at 3000.773 kb on - strand, within MPMX20_02847 at 3000.773 kb on - strand, within MPMX20_02847 at 3000.773 kb on - strand, within MPMX20_02847 at 3000.785 kb on + strand at 3000.791 kb on - strand at 3000.791 kb on - strand at 3000.793 kb on + strand at 3000.800 kb on - strand at 3000.813 kb on + strand at 3000.821 kb on + strand at 3000.830 kb on - strand at 3000.833 kb on + strand at 3000.838 kb on + strand at 3000.838 kb on + strand at 3000.838 kb on - strand at 3000.846 kb on - strand at 3000.852 kb on + strand at 3000.858 kb on + strand at 3000.858 kb on + strand at 3000.858 kb on + strand at 3000.863 kb on + strand at 3000.863 kb on + strand at 3000.863 kb on + strand at 3000.863 kb on + strand at 3000.863 kb on + strand at 3000.863 kb on + strand at 3000.863 kb on + strand at 3000.863 kb on + strand at 3000.866 kb on - strand at 3000.871 kb on - strand at 3000.871 kb on - strand at 3000.917 kb on - strand at 3000.920 kb on + strand at 3000.920 kb on + strand at 3000.920 kb on + strand at 3000.928 kb on - strand at 3000.928 kb on - strand at 3000.995 kb on - strand at 3001.004 kb on + strand at 3001.004 kb on + strand at 3001.004 kb on + strand at 3001.004 kb on + strand at 3001.009 kb on + strand at 3001.009 kb on + strand at 3001.009 kb on + strand at 3001.009 kb on + strand at 3001.012 kb on - strand at 3001.012 kb on - strand at 3001.012 kb on - strand at 3001.017 kb on - strand at 3001.017 kb on - strand at 3001.017 kb on - strand at 3001.017 kb on - strand at 3001.017 kb on - strand at 3001.017 kb on - strand at 3001.020 kb on + strand at 3001.021 kb on - strand at 3001.030 kb on + strand at 3001.037 kb on - strand at 3001.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; inner cut; 0.3% agar remove 2,998,530 + +0.4 2,998,538 - -0.5 2,998,538 - +0.3 2,998,538 - -0.3 2,998,538 - -0.4 2,998,540 - -0.8 2,998,542 + +0.3 2,998,551 - -0.8 2,998,553 + +1.8 2,998,553 + -0.4 2,998,553 + -0.4 2,998,557 - +1.5 2,998,647 - +1.5 2,998,653 + +1.2 2,998,730 + MPMX20_02845 0.11 +0.8 2,998,744 + MPMX20_02845 0.13 +0.2 2,998,784 - MPMX20_02845 0.18 +2.0 2,998,803 - MPMX20_02845 0.20 +0.6 2,998,807 - MPMX20_02845 0.21 -0.0 2,998,833 + MPMX20_02845 0.24 +0.2 2,998,880 + MPMX20_02845 0.30 +0.2 2,998,911 + MPMX20_02845 0.34 +0.5 2,998,934 - MPMX20_02845 0.36 +0.2 2,998,936 - MPMX20_02845 0.37 -0.9 2,998,942 - MPMX20_02845 0.37 +0.0 2,998,949 - MPMX20_02845 0.38 -1.1 2,998,964 - MPMX20_02845 0.40 +0.9 2,998,967 - MPMX20_02845 0.41 +0.3 2,999,047 - MPMX20_02845 0.51 +0.4 2,999,069 + MPMX20_02845 0.53 +1.0 2,999,071 + MPMX20_02845 0.54 -0.1 2,999,086 + MPMX20_02845 0.55 -0.8 2,999,106 + MPMX20_02845 0.58 +0.3 2,999,106 + MPMX20_02845 0.58 -1.2 2,999,114 - MPMX20_02845 0.59 +0.7 2,999,114 - MPMX20_02845 0.59 +0.8 2,999,131 - MPMX20_02845 0.61 +0.4 2,999,145 + MPMX20_02845 0.63 -1.8 2,999,187 + MPMX20_02845 0.68 -0.0 2,999,289 - MPMX20_02845 0.81 -1.8 2,999,294 - MPMX20_02845 0.81 +0.6 2,999,303 + MPMX20_02845 0.83 -0.1 2,999,336 - MPMX20_02845 0.87 +0.9 2,999,378 + +1.8 2,999,386 - -0.4 2,999,393 + +0.7 2,999,401 - +0.1 2,999,405 + -0.7 2,999,422 + +0.5 2,999,422 + +0.3 2,999,422 + +0.8 2,999,422 + +1.4 2,999,422 + +0.5 2,999,430 - -0.7 2,999,430 - +0.7 2,999,474 + -0.4 2,999,495 + +1.0 2,999,495 + +0.7 2,999,495 + -1.3 2,999,495 + -0.7 2,999,495 + +1.8 2,999,495 + -0.0 2,999,495 + -0.5 2,999,495 + -0.2 2,999,495 + -0.6 2,999,495 + +0.4 2,999,495 + -0.2 2,999,496 + +0.2 2,999,503 - +0.4 2,999,503 - +0.4 2,999,503 - +1.9 2,999,503 - +0.3 2,999,503 - +0.2 2,999,503 - -0.7 2,999,503 - +1.7 2,999,503 - +1.5 2,999,503 - -0.1 2,999,503 - -0.1 2,999,503 - +0.5 2,999,503 - -1.1 2,999,503 - +1.6 2,999,504 + -0.5 2,999,553 + +2.2 2,999,568 - +1.2 2,999,605 + MPMX20_02846 0.14 -0.1 2,999,605 + MPMX20_02846 0.14 +0.2 2,999,605 + MPMX20_02846 0.14 -0.4 2,999,608 - MPMX20_02846 0.14 +0.7 2,999,613 - MPMX20_02846 0.15 +0.4 2,999,613 - MPMX20_02846 0.15 +0.6 2,999,613 - MPMX20_02846 0.15 -1.1 2,999,613 - MPMX20_02846 0.15 -0.7 2,999,613 - MPMX20_02846 0.15 +0.1 2,999,615 + MPMX20_02846 0.16 -0.4 2,999,615 + MPMX20_02846 0.16 +0.4 2,999,615 + MPMX20_02846 0.16 +0.3 2,999,628 - MPMX20_02846 0.18 -2.0 2,999,640 + MPMX20_02846 0.20 -2.5 2,999,648 - MPMX20_02846 0.22 -0.8 2,999,683 + MPMX20_02846 0.28 -1.4 2,999,685 + MPMX20_02846 0.28 +2.2 2,999,691 - MPMX20_02846 0.29 -0.0 2,999,691 - MPMX20_02846 0.29 +0.4 2,999,691 - MPMX20_02846 0.29 -1.7 2,999,720 + MPMX20_02846 0.35 -0.6 2,999,724 - MPMX20_02846 0.35 +1.2 2,999,744 - MPMX20_02846 0.39 -1.3 2,999,749 - MPMX20_02846 0.40 -0.5 2,999,757 + MPMX20_02846 0.41 +2.2 2,999,772 - MPMX20_02846 0.44 -0.4 2,999,778 - MPMX20_02846 0.45 +0.4 2,999,824 - MPMX20_02846 0.53 -1.2 2,999,829 + MPMX20_02846 0.54 -1.0 2,999,837 - MPMX20_02846 0.56 +0.8 2,999,839 + MPMX20_02846 0.56 +0.0 2,999,844 + MPMX20_02846 0.57 -0.9 2,999,844 + MPMX20_02846 0.57 -0.4 2,999,844 + MPMX20_02846 0.57 -0.4 2,999,882 - MPMX20_02846 0.64 -0.4 2,999,891 + MPMX20_02846 0.66 -0.6 3,000,031 - -0.7 3,000,031 - +0.6 3,000,040 - +0.5 3,000,095 + -2.0 3,000,134 + -0.0 3,000,134 + -0.4 3,000,141 - -1.0 3,000,188 - +1.2 3,000,202 - -1.3 3,000,202 - -1.6 3,000,210 + MPMX20_02847 0.10 -0.3 3,000,210 + MPMX20_02847 0.10 -2.0 3,000,220 + MPMX20_02847 0.12 -0.9 3,000,243 - MPMX20_02847 0.15 -1.3 3,000,269 - MPMX20_02847 0.19 -1.1 3,000,275 - MPMX20_02847 0.19 -0.8 3,000,286 + MPMX20_02847 0.21 -1.4 3,000,286 + MPMX20_02847 0.21 -1.6 3,000,286 + MPMX20_02847 0.21 -1.6 3,000,286 + MPMX20_02847 0.21 +1.2 3,000,294 - MPMX20_02847 0.22 -0.6 3,000,294 - MPMX20_02847 0.22 -2.5 3,000,294 - MPMX20_02847 0.22 -1.4 3,000,357 - MPMX20_02847 0.31 -1.3 3,000,370 + MPMX20_02847 0.33 -1.7 3,000,370 + MPMX20_02847 0.33 -1.6 3,000,380 + MPMX20_02847 0.34 -2.1 3,000,390 + MPMX20_02847 0.35 -0.9 3,000,393 + MPMX20_02847 0.36 -0.8 3,000,401 - MPMX20_02847 0.37 -0.8 3,000,421 + MPMX20_02847 0.40 -1.6 3,000,421 + MPMX20_02847 0.40 -1.5 3,000,421 - MPMX20_02847 0.40 -1.0 3,000,480 + MPMX20_02847 0.48 -1.3 3,000,539 + MPMX20_02847 0.56 -0.0 3,000,577 + MPMX20_02847 0.61 +0.1 3,000,580 - MPMX20_02847 0.62 -1.7 3,000,580 - MPMX20_02847 0.62 -0.6 3,000,582 + MPMX20_02847 0.62 -1.4 3,000,588 - MPMX20_02847 0.63 -0.1 3,000,633 + MPMX20_02847 0.69 -2.3 3,000,683 + MPMX20_02847 0.76 -2.2 3,000,723 - MPMX20_02847 0.82 +1.8 3,000,765 + MPMX20_02847 0.88 -0.8 3,000,765 + MPMX20_02847 0.88 -0.0 3,000,765 + MPMX20_02847 0.88 -0.4 3,000,772 + MPMX20_02847 0.88 -2.0 3,000,772 + MPMX20_02847 0.88 -0.9 3,000,773 - MPMX20_02847 0.89 -0.4 3,000,773 - MPMX20_02847 0.89 -2.1 3,000,773 - MPMX20_02847 0.89 -1.0 3,000,785 + -0.9 3,000,791 - -1.0 3,000,791 - -0.1 3,000,793 + -3.4 3,000,800 - -2.1 3,000,813 + -1.3 3,000,821 + -0.7 3,000,830 - +0.2 3,000,833 + -1.6 3,000,838 + -1.6 3,000,838 + -2.6 3,000,838 - -2.1 3,000,846 - -2.4 3,000,852 + -2.6 3,000,858 + -1.2 3,000,858 + -1.7 3,000,858 + -1.3 3,000,863 + -1.0 3,000,863 + -1.4 3,000,863 + -1.2 3,000,863 + -0.2 3,000,863 + -1.0 3,000,863 + -1.3 3,000,863 + -0.9 3,000,863 + -0.2 3,000,866 - -0.4 3,000,871 - -0.4 3,000,871 - -1.1 3,000,917 - -1.5 3,000,920 + -2.0 3,000,920 + -1.4 3,000,920 + -2.4 3,000,928 - -0.5 3,000,928 - -2.3 3,000,995 - +0.4 3,001,004 + -0.4 3,001,004 + -1.1 3,001,004 + -0.2 3,001,004 + +0.2 3,001,009 + -1.2 3,001,009 + -0.8 3,001,009 + +0.4 3,001,009 + +0.2 3,001,012 - +0.4 3,001,012 - -0.7 3,001,012 - +1.5 3,001,017 - -0.1 3,001,017 - -0.0 3,001,017 - +1.2 3,001,017 - -0.8 3,001,017 - -0.4 3,001,017 - -0.0 3,001,020 + -1.0 3,001,021 - +1.4 3,001,030 + -0.5 3,001,037 - +0.8 3,001,050 - +0.0
Or see this region's nucleotide sequence