Experiment: Motility test in 1X LB; 1 day; inner cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01767 and MPMX20_01768 are separated by 140 nucleotides MPMX20_01768 and MPMX20_01769 are separated by 16 nucleotides MPMX20_01769 and MPMX20_01770 are separated by 110 nucleotides MPMX20_01770 and MPMX20_01771 are separated by 6 nucleotides MPMX20_01771 and MPMX20_01772 are separated by 15 nucleotides
MPMX20_01767: MPMX20_01767 - 7-methyl-GTP pyrophosphatase, at 1,861,326 to 1,861,910
_01767
MPMX20_01768: MPMX20_01768 - Large ribosomal RNA subunit accumulation protein YceD, at 1,862,051 to 1,862,572
_01768
MPMX20_01769: MPMX20_01769 - 50S ribosomal protein L32, at 1,862,589 to 1,862,762
_01769
MPMX20_01770: MPMX20_01770 - Phosphate acyltransferase, at 1,862,873 to 1,863,877
_01770
MPMX20_01771: MPMX20_01771 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 1,863,884 to 1,864,837
_01771
MPMX20_01772: MPMX20_01772 - Malonyl CoA-acyl carrier protein transacylase, at 1,864,853 to 1,865,782
_01772
Position (kb)
1862
1863
1864 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1861.877 kb on + strand at 1861.878 kb on + strand at 1861.878 kb on + strand at 1861.878 kb on + strand at 1861.879 kb on + strand at 1861.924 kb on + strand at 1861.989 kb on + strand at 1862.096 kb on + strand at 1862.140 kb on + strand, within MPMX20_01768 at 1862.168 kb on + strand, within MPMX20_01768 at 1862.178 kb on + strand, within MPMX20_01768 at 1862.180 kb on + strand, within MPMX20_01768 at 1862.190 kb on + strand, within MPMX20_01768 at 1862.260 kb on + strand, within MPMX20_01768 at 1862.275 kb on - strand, within MPMX20_01768 at 1862.326 kb on + strand, within MPMX20_01768 at 1862.344 kb on + strand, within MPMX20_01768 at 1862.473 kb on + strand, within MPMX20_01768 at 1862.570 kb on + strand at 1862.585 kb on + strand at 1862.849 kb on + strand at 1862.857 kb on - strand at 1862.901 kb on - strand at 1863.018 kb on - strand, within MPMX20_01770 at 1863.025 kb on + strand, within MPMX20_01770 at 1863.033 kb on - strand, within MPMX20_01770 at 1863.091 kb on + strand, within MPMX20_01770 at 1863.129 kb on - strand, within MPMX20_01770 at 1863.150 kb on - strand, within MPMX20_01770 at 1863.239 kb on + strand, within MPMX20_01770 at 1863.261 kb on - strand, within MPMX20_01770 at 1863.306 kb on + strand, within MPMX20_01770 at 1863.306 kb on + strand, within MPMX20_01770 at 1863.314 kb on - strand, within MPMX20_01770 at 1863.314 kb on - strand, within MPMX20_01770 at 1863.396 kb on - strand, within MPMX20_01770 at 1863.399 kb on + strand, within MPMX20_01770 at 1863.416 kb on + strand, within MPMX20_01770 at 1863.416 kb on + strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.424 kb on - strand, within MPMX20_01770 at 1863.485 kb on + strand, within MPMX20_01770 at 1863.521 kb on + strand, within MPMX20_01770 at 1863.572 kb on - strand, within MPMX20_01770 at 1863.598 kb on + strand, within MPMX20_01770 at 1863.691 kb on + strand, within MPMX20_01770 at 1863.691 kb on + strand, within MPMX20_01770 at 1863.699 kb on - strand, within MPMX20_01770 at 1863.699 kb on - strand, within MPMX20_01770 at 1863.699 kb on - strand, within MPMX20_01770 at 1863.706 kb on + strand, within MPMX20_01770 at 1863.706 kb on + strand, within MPMX20_01770 at 1863.706 kb on + strand, within MPMX20_01770 at 1863.714 kb on - strand, within MPMX20_01770 at 1863.714 kb on - strand, within MPMX20_01770 at 1863.714 kb on - strand, within MPMX20_01770 at 1863.878 kb on + strand at 1863.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; inner cut; 0.3% agar remove 1,861,877 + +1.5 1,861,878 + +0.5 1,861,878 + +0.8 1,861,878 + +0.4 1,861,879 + +0.4 1,861,924 + -0.1 1,861,989 + +1.1 1,862,096 + -0.9 1,862,140 + MPMX20_01768 0.17 -0.5 1,862,168 + MPMX20_01768 0.22 +0.1 1,862,178 + MPMX20_01768 0.24 +0.5 1,862,180 + MPMX20_01768 0.25 +0.1 1,862,190 + MPMX20_01768 0.27 -0.9 1,862,260 + MPMX20_01768 0.40 +0.1 1,862,275 - MPMX20_01768 0.43 +0.1 1,862,326 + MPMX20_01768 0.53 +1.7 1,862,344 + MPMX20_01768 0.56 +1.1 1,862,473 + MPMX20_01768 0.81 +0.1 1,862,570 + +0.1 1,862,585 + -1.9 1,862,849 + +0.0 1,862,857 - -0.9 1,862,901 - +0.1 1,863,018 - MPMX20_01770 0.14 -0.1 1,863,025 + MPMX20_01770 0.15 -0.4 1,863,033 - MPMX20_01770 0.16 -0.7 1,863,091 + MPMX20_01770 0.22 -1.1 1,863,129 - MPMX20_01770 0.25 -1.4 1,863,150 - MPMX20_01770 0.28 +0.5 1,863,239 + MPMX20_01770 0.36 -0.9 1,863,261 - MPMX20_01770 0.39 +0.7 1,863,306 + MPMX20_01770 0.43 -0.5 1,863,306 + MPMX20_01770 0.43 -1.6 1,863,314 - MPMX20_01770 0.44 -1.1 1,863,314 - MPMX20_01770 0.44 -2.0 1,863,396 - MPMX20_01770 0.52 -0.9 1,863,399 + MPMX20_01770 0.52 -1.8 1,863,416 + MPMX20_01770 0.54 -1.1 1,863,416 + MPMX20_01770 0.54 -1.9 1,863,424 - MPMX20_01770 0.55 -1.4 1,863,424 - MPMX20_01770 0.55 -0.9 1,863,424 - MPMX20_01770 0.55 +0.0 1,863,424 - MPMX20_01770 0.55 -1.2 1,863,424 - MPMX20_01770 0.55 -0.1 1,863,424 - MPMX20_01770 0.55 -0.5 1,863,424 - MPMX20_01770 0.55 -2.4 1,863,485 + MPMX20_01770 0.61 -2.1 1,863,521 + MPMX20_01770 0.64 -1.6 1,863,572 - MPMX20_01770 0.70 +0.1 1,863,598 + MPMX20_01770 0.72 -1.2 1,863,691 + MPMX20_01770 0.81 -2.2 1,863,691 + MPMX20_01770 0.81 -1.4 1,863,699 - MPMX20_01770 0.82 +1.1 1,863,699 - MPMX20_01770 0.82 -1.7 1,863,699 - MPMX20_01770 0.82 -2.6 1,863,706 + MPMX20_01770 0.83 -2.3 1,863,706 + MPMX20_01770 0.83 -1.5 1,863,706 + MPMX20_01770 0.83 -1.5 1,863,714 - MPMX20_01770 0.84 -1.7 1,863,714 - MPMX20_01770 0.84 -3.1 1,863,714 - MPMX20_01770 0.84 -0.4 1,863,878 + +0.0 1,863,878 + -2.5
Or see this region's nucleotide sequence