Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01770

Experiment: Motility test in 1X LB; 1 day; inner cut; 0.3% agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01767 and MPMX20_01768 are separated by 140 nucleotidesMPMX20_01768 and MPMX20_01769 are separated by 16 nucleotidesMPMX20_01769 and MPMX20_01770 are separated by 110 nucleotidesMPMX20_01770 and MPMX20_01771 are separated by 6 nucleotidesMPMX20_01771 and MPMX20_01772 are separated by 15 nucleotides MPMX20_01767: MPMX20_01767 - 7-methyl-GTP pyrophosphatase, at 1,861,326 to 1,861,910 _01767 MPMX20_01768: MPMX20_01768 - Large ribosomal RNA subunit accumulation protein YceD, at 1,862,051 to 1,862,572 _01768 MPMX20_01769: MPMX20_01769 - 50S ribosomal protein L32, at 1,862,589 to 1,862,762 _01769 MPMX20_01770: MPMX20_01770 - Phosphate acyltransferase, at 1,862,873 to 1,863,877 _01770 MPMX20_01771: MPMX20_01771 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 1,863,884 to 1,864,837 _01771 MPMX20_01772: MPMX20_01772 - Malonyl CoA-acyl carrier protein transacylase, at 1,864,853 to 1,865,782 _01772 Position (kb) 1862 1863 1864Strain fitness (log2 ratio) -3 -2 -1 0 1at 1861.877 kb on + strandat 1861.878 kb on + strandat 1861.878 kb on + strandat 1861.878 kb on + strandat 1861.879 kb on + strandat 1861.924 kb on + strandat 1861.989 kb on + strandat 1862.096 kb on + strandat 1862.140 kb on + strand, within MPMX20_01768at 1862.168 kb on + strand, within MPMX20_01768at 1862.178 kb on + strand, within MPMX20_01768at 1862.180 kb on + strand, within MPMX20_01768at 1862.190 kb on + strand, within MPMX20_01768at 1862.260 kb on + strand, within MPMX20_01768at 1862.275 kb on - strand, within MPMX20_01768at 1862.326 kb on + strand, within MPMX20_01768at 1862.344 kb on + strand, within MPMX20_01768at 1862.473 kb on + strand, within MPMX20_01768at 1862.570 kb on + strandat 1862.585 kb on + strandat 1862.849 kb on + strandat 1862.857 kb on - strandat 1862.901 kb on - strandat 1863.018 kb on - strand, within MPMX20_01770at 1863.025 kb on + strand, within MPMX20_01770at 1863.033 kb on - strand, within MPMX20_01770at 1863.091 kb on + strand, within MPMX20_01770at 1863.129 kb on - strand, within MPMX20_01770at 1863.150 kb on - strand, within MPMX20_01770at 1863.239 kb on + strand, within MPMX20_01770at 1863.261 kb on - strand, within MPMX20_01770at 1863.306 kb on + strand, within MPMX20_01770at 1863.306 kb on + strand, within MPMX20_01770at 1863.314 kb on - strand, within MPMX20_01770at 1863.314 kb on - strand, within MPMX20_01770at 1863.396 kb on - strand, within MPMX20_01770at 1863.399 kb on + strand, within MPMX20_01770at 1863.416 kb on + strand, within MPMX20_01770at 1863.416 kb on + strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.424 kb on - strand, within MPMX20_01770at 1863.485 kb on + strand, within MPMX20_01770at 1863.521 kb on + strand, within MPMX20_01770at 1863.572 kb on - strand, within MPMX20_01770at 1863.598 kb on + strand, within MPMX20_01770at 1863.691 kb on + strand, within MPMX20_01770at 1863.691 kb on + strand, within MPMX20_01770at 1863.699 kb on - strand, within MPMX20_01770at 1863.699 kb on - strand, within MPMX20_01770at 1863.699 kb on - strand, within MPMX20_01770at 1863.706 kb on + strand, within MPMX20_01770at 1863.706 kb on + strand, within MPMX20_01770at 1863.706 kb on + strand, within MPMX20_01770at 1863.714 kb on - strand, within MPMX20_01770at 1863.714 kb on - strand, within MPMX20_01770at 1863.714 kb on - strand, within MPMX20_01770at 1863.878 kb on + strandat 1863.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; inner cut; 0.3% agar
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1,861,877 + +1.5
1,861,878 + +0.5
1,861,878 + +0.8
1,861,878 + +0.4
1,861,879 + +0.4
1,861,924 + -0.1
1,861,989 + +1.1
1,862,096 + -0.9
1,862,140 + MPMX20_01768 0.17 -0.5
1,862,168 + MPMX20_01768 0.22 +0.1
1,862,178 + MPMX20_01768 0.24 +0.5
1,862,180 + MPMX20_01768 0.25 +0.1
1,862,190 + MPMX20_01768 0.27 -0.9
1,862,260 + MPMX20_01768 0.40 +0.1
1,862,275 - MPMX20_01768 0.43 +0.1
1,862,326 + MPMX20_01768 0.53 +1.7
1,862,344 + MPMX20_01768 0.56 +1.1
1,862,473 + MPMX20_01768 0.81 +0.1
1,862,570 + +0.1
1,862,585 + -1.9
1,862,849 + +0.0
1,862,857 - -0.9
1,862,901 - +0.1
1,863,018 - MPMX20_01770 0.14 -0.1
1,863,025 + MPMX20_01770 0.15 -0.4
1,863,033 - MPMX20_01770 0.16 -0.7
1,863,091 + MPMX20_01770 0.22 -1.1
1,863,129 - MPMX20_01770 0.25 -1.4
1,863,150 - MPMX20_01770 0.28 +0.5
1,863,239 + MPMX20_01770 0.36 -0.9
1,863,261 - MPMX20_01770 0.39 +0.7
1,863,306 + MPMX20_01770 0.43 -0.5
1,863,306 + MPMX20_01770 0.43 -1.6
1,863,314 - MPMX20_01770 0.44 -1.1
1,863,314 - MPMX20_01770 0.44 -2.0
1,863,396 - MPMX20_01770 0.52 -0.9
1,863,399 + MPMX20_01770 0.52 -1.8
1,863,416 + MPMX20_01770 0.54 -1.1
1,863,416 + MPMX20_01770 0.54 -1.9
1,863,424 - MPMX20_01770 0.55 -1.4
1,863,424 - MPMX20_01770 0.55 -0.9
1,863,424 - MPMX20_01770 0.55 +0.0
1,863,424 - MPMX20_01770 0.55 -1.2
1,863,424 - MPMX20_01770 0.55 -0.1
1,863,424 - MPMX20_01770 0.55 -0.5
1,863,424 - MPMX20_01770 0.55 -2.4
1,863,485 + MPMX20_01770 0.61 -2.1
1,863,521 + MPMX20_01770 0.64 -1.6
1,863,572 - MPMX20_01770 0.70 +0.1
1,863,598 + MPMX20_01770 0.72 -1.2
1,863,691 + MPMX20_01770 0.81 -2.2
1,863,691 + MPMX20_01770 0.81 -1.4
1,863,699 - MPMX20_01770 0.82 +1.1
1,863,699 - MPMX20_01770 0.82 -1.7
1,863,699 - MPMX20_01770 0.82 -2.6
1,863,706 + MPMX20_01770 0.83 -2.3
1,863,706 + MPMX20_01770 0.83 -1.5
1,863,706 + MPMX20_01770 0.83 -1.5
1,863,714 - MPMX20_01770 0.84 -1.7
1,863,714 - MPMX20_01770 0.84 -3.1
1,863,714 - MPMX20_01770 0.84 -0.4
1,863,878 + +0.0
1,863,878 + -2.5

Or see this region's nucleotide sequence