Experiment: Motility test in 1X LB; 1 day; inner cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01760 and MPMX20_01761 are separated by 75 nucleotides MPMX20_01761 and MPMX20_01762 are separated by 14 nucleotides
MPMX20_01760: MPMX20_01760 - Peptidoglycan hydrolase FlgJ, at 1,850,606 to 1,851,559
_01760
MPMX20_01761: MPMX20_01761 - Flagellar hook-associated protein 1, at 1,851,635 to 1,853,275
_01761
MPMX20_01762: MPMX20_01762 - Flagellar hook-associated protein 3, at 1,853,290 to 1,854,243
_01762
Position (kb)
1851
1852
1853
1854 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1850.681 kb on + strand at 1850.681 kb on + strand at 1850.689 kb on - strand at 1850.796 kb on - strand, within MPMX20_01760 at 1850.796 kb on - strand, within MPMX20_01760 at 1850.843 kb on + strand, within MPMX20_01760 at 1850.865 kb on + strand, within MPMX20_01760 at 1850.904 kb on - strand, within MPMX20_01760 at 1850.913 kb on + strand, within MPMX20_01760 at 1850.991 kb on - strand, within MPMX20_01760 at 1851.014 kb on + strand, within MPMX20_01760 at 1851.118 kb on - strand, within MPMX20_01760 at 1851.152 kb on + strand, within MPMX20_01760 at 1851.163 kb on + strand, within MPMX20_01760 at 1851.251 kb on - strand, within MPMX20_01760 at 1851.255 kb on + strand, within MPMX20_01760 at 1851.301 kb on + strand, within MPMX20_01760 at 1851.301 kb on + strand, within MPMX20_01760 at 1851.354 kb on + strand, within MPMX20_01760 at 1851.359 kb on + strand, within MPMX20_01760 at 1851.362 kb on - strand, within MPMX20_01760 at 1851.362 kb on - strand, within MPMX20_01760 at 1851.400 kb on + strand, within MPMX20_01760 at 1851.408 kb on + strand, within MPMX20_01760 at 1851.431 kb on - strand, within MPMX20_01760 at 1851.517 kb on + strand at 1851.640 kb on - strand at 1851.667 kb on + strand at 1851.667 kb on + strand at 1851.667 kb on + strand at 1851.667 kb on + strand at 1851.667 kb on + strand at 1851.667 kb on + strand at 1851.667 kb on + strand at 1851.672 kb on + strand at 1851.672 kb on + strand at 1851.672 kb on + strand at 1851.675 kb on - strand at 1851.675 kb on - strand at 1851.680 kb on - strand at 1851.680 kb on - strand at 1851.680 kb on - strand at 1851.680 kb on - strand at 1851.731 kb on + strand at 1851.877 kb on + strand, within MPMX20_01761 at 1851.880 kb on - strand, within MPMX20_01761 at 1851.954 kb on + strand, within MPMX20_01761 at 1851.954 kb on + strand, within MPMX20_01761 at 1851.962 kb on - strand, within MPMX20_01761 at 1852.039 kb on - strand, within MPMX20_01761 at 1852.111 kb on - strand, within MPMX20_01761 at 1852.244 kb on + strand, within MPMX20_01761 at 1852.275 kb on + strand, within MPMX20_01761 at 1852.302 kb on - strand, within MPMX20_01761 at 1852.302 kb on - strand, within MPMX20_01761 at 1852.302 kb on - strand, within MPMX20_01761 at 1852.335 kb on + strand, within MPMX20_01761 at 1852.348 kb on - strand, within MPMX20_01761 at 1852.353 kb on + strand, within MPMX20_01761 at 1852.388 kb on + strand, within MPMX20_01761 at 1852.388 kb on + strand, within MPMX20_01761 at 1852.388 kb on + strand, within MPMX20_01761 at 1852.388 kb on + strand, within MPMX20_01761 at 1852.396 kb on - strand, within MPMX20_01761 at 1852.396 kb on - strand, within MPMX20_01761 at 1852.396 kb on - strand, within MPMX20_01761 at 1852.396 kb on - strand, within MPMX20_01761 at 1852.396 kb on - strand, within MPMX20_01761 at 1852.396 kb on - strand, within MPMX20_01761 at 1852.398 kb on + strand, within MPMX20_01761 at 1852.406 kb on - strand, within MPMX20_01761 at 1852.406 kb on - strand, within MPMX20_01761 at 1852.408 kb on + strand, within MPMX20_01761 at 1852.408 kb on + strand, within MPMX20_01761 at 1852.408 kb on + strand, within MPMX20_01761 at 1852.416 kb on - strand, within MPMX20_01761 at 1852.416 kb on - strand, within MPMX20_01761 at 1852.416 kb on - strand, within MPMX20_01761 at 1852.416 kb on - strand, within MPMX20_01761 at 1852.416 kb on - strand, within MPMX20_01761 at 1852.416 kb on - strand, within MPMX20_01761 at 1852.464 kb on + strand, within MPMX20_01761 at 1852.502 kb on + strand, within MPMX20_01761 at 1852.502 kb on - strand, within MPMX20_01761 at 1852.505 kb on - strand, within MPMX20_01761 at 1852.524 kb on + strand, within MPMX20_01761 at 1852.524 kb on + strand, within MPMX20_01761 at 1852.524 kb on + strand, within MPMX20_01761 at 1852.524 kb on + strand, within MPMX20_01761 at 1852.524 kb on + strand, within MPMX20_01761 at 1852.531 kb on - strand, within MPMX20_01761 at 1852.532 kb on - strand, within MPMX20_01761 at 1852.532 kb on - strand, within MPMX20_01761 at 1852.532 kb on - strand, within MPMX20_01761 at 1852.546 kb on - strand, within MPMX20_01761 at 1852.546 kb on - strand, within MPMX20_01761 at 1852.551 kb on - strand, within MPMX20_01761 at 1852.580 kb on + strand, within MPMX20_01761 at 1852.602 kb on - strand, within MPMX20_01761 at 1852.716 kb on + strand, within MPMX20_01761 at 1852.742 kb on + strand, within MPMX20_01761 at 1852.750 kb on - strand, within MPMX20_01761 at 1852.766 kb on + strand, within MPMX20_01761 at 1852.788 kb on + strand, within MPMX20_01761 at 1852.788 kb on + strand, within MPMX20_01761 at 1852.788 kb on + strand, within MPMX20_01761 at 1852.788 kb on + strand, within MPMX20_01761 at 1852.788 kb on + strand, within MPMX20_01761 at 1852.796 kb on - strand, within MPMX20_01761 at 1852.796 kb on - strand, within MPMX20_01761 at 1852.796 kb on - strand, within MPMX20_01761 at 1852.796 kb on - strand, within MPMX20_01761 at 1852.829 kb on - strand, within MPMX20_01761 at 1852.904 kb on + strand, within MPMX20_01761 at 1852.933 kb on + strand, within MPMX20_01761 at 1853.056 kb on + strand, within MPMX20_01761 at 1853.156 kb on + strand at 1853.157 kb on + strand at 1853.157 kb on + strand at 1853.165 kb on - strand at 1853.182 kb on - strand at 1853.211 kb on - strand at 1853.211 kb on - strand at 1853.278 kb on - strand at 1853.282 kb on + strand at 1853.284 kb on - strand at 1853.290 kb on - strand at 1853.371 kb on + strand at 1853.553 kb on - strand, within MPMX20_01762 at 1853.563 kb on - strand, within MPMX20_01762 at 1853.753 kb on - strand, within MPMX20_01762 at 1853.753 kb on - strand, within MPMX20_01762 at 1853.778 kb on + strand, within MPMX20_01762 at 1853.778 kb on + strand, within MPMX20_01762 at 1853.786 kb on - strand, within MPMX20_01762 at 1853.786 kb on - strand, within MPMX20_01762 at 1853.786 kb on - strand, within MPMX20_01762 at 1853.815 kb on + strand, within MPMX20_01762 at 1853.815 kb on + strand, within MPMX20_01762 at 1853.815 kb on + strand, within MPMX20_01762 at 1853.815 kb on + strand, within MPMX20_01762 at 1853.823 kb on - strand, within MPMX20_01762 at 1853.823 kb on - strand, within MPMX20_01762 at 1853.849 kb on + strand, within MPMX20_01762 at 1853.857 kb on - strand, within MPMX20_01762 at 1853.862 kb on - strand, within MPMX20_01762 at 1853.867 kb on - strand, within MPMX20_01762 at 1853.878 kb on - strand, within MPMX20_01762 at 1853.967 kb on - strand, within MPMX20_01762 at 1854.075 kb on + strand, within MPMX20_01762 at 1854.083 kb on - strand, within MPMX20_01762 at 1854.094 kb on - strand, within MPMX20_01762 at 1854.096 kb on + strand, within MPMX20_01762 at 1854.096 kb on + strand, within MPMX20_01762 at 1854.096 kb on + strand, within MPMX20_01762 at 1854.114 kb on - strand, within MPMX20_01762 at 1854.245 kb on + strand at 1854.252 kb on - strand at 1854.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; inner cut; 0.3% agar remove 1,850,681 + -0.5 1,850,681 + -1.0 1,850,689 - -1.2 1,850,796 - MPMX20_01760 0.20 -1.1 1,850,796 - MPMX20_01760 0.20 +0.3 1,850,843 + MPMX20_01760 0.25 -0.8 1,850,865 + MPMX20_01760 0.27 +0.2 1,850,904 - MPMX20_01760 0.31 -2.1 1,850,913 + MPMX20_01760 0.32 -2.1 1,850,991 - MPMX20_01760 0.40 +0.1 1,851,014 + MPMX20_01760 0.43 -1.9 1,851,118 - MPMX20_01760 0.54 -1.1 1,851,152 + MPMX20_01760 0.57 -0.3 1,851,163 + MPMX20_01760 0.58 -1.2 1,851,251 - MPMX20_01760 0.68 -0.3 1,851,255 + MPMX20_01760 0.68 -1.5 1,851,301 + MPMX20_01760 0.73 -2.7 1,851,301 + MPMX20_01760 0.73 +0.4 1,851,354 + MPMX20_01760 0.78 -1.3 1,851,359 + MPMX20_01760 0.79 -0.9 1,851,362 - MPMX20_01760 0.79 -1.2 1,851,362 - MPMX20_01760 0.79 -2.7 1,851,400 + MPMX20_01760 0.83 +1.0 1,851,408 + MPMX20_01760 0.84 +1.1 1,851,431 - MPMX20_01760 0.86 -2.1 1,851,517 + -0.5 1,851,640 - -1.4 1,851,667 + -4.3 1,851,667 + -1.5 1,851,667 + -1.5 1,851,667 + -0.8 1,851,667 + -0.8 1,851,667 + -2.0 1,851,667 + -1.2 1,851,672 + -2.6 1,851,672 + -0.0 1,851,672 + -0.5 1,851,675 - -0.7 1,851,675 - +0.1 1,851,680 - -0.8 1,851,680 - -2.6 1,851,680 - -0.9 1,851,680 - -2.5 1,851,731 + -1.1 1,851,877 + MPMX20_01761 0.15 -3.5 1,851,880 - MPMX20_01761 0.15 -2.9 1,851,954 + MPMX20_01761 0.19 -3.4 1,851,954 + MPMX20_01761 0.19 -2.3 1,851,962 - MPMX20_01761 0.20 -0.8 1,852,039 - MPMX20_01761 0.25 -0.9 1,852,111 - MPMX20_01761 0.29 -2.4 1,852,244 + MPMX20_01761 0.37 -3.0 1,852,275 + MPMX20_01761 0.39 -1.2 1,852,302 - MPMX20_01761 0.41 -1.8 1,852,302 - MPMX20_01761 0.41 -1.4 1,852,302 - MPMX20_01761 0.41 -0.9 1,852,335 + MPMX20_01761 0.43 -1.8 1,852,348 - MPMX20_01761 0.43 -0.1 1,852,353 + MPMX20_01761 0.44 -1.5 1,852,388 + MPMX20_01761 0.46 -1.4 1,852,388 + MPMX20_01761 0.46 -2.4 1,852,388 + MPMX20_01761 0.46 -0.9 1,852,388 + MPMX20_01761 0.46 -2.3 1,852,396 - MPMX20_01761 0.46 -3.0 1,852,396 - MPMX20_01761 0.46 -2.0 1,852,396 - MPMX20_01761 0.46 -0.7 1,852,396 - MPMX20_01761 0.46 -0.2 1,852,396 - MPMX20_01761 0.46 -3.0 1,852,396 - MPMX20_01761 0.46 -2.6 1,852,398 + MPMX20_01761 0.46 -1.2 1,852,406 - MPMX20_01761 0.47 -2.0 1,852,406 - MPMX20_01761 0.47 -1.2 1,852,408 + MPMX20_01761 0.47 -2.3 1,852,408 + MPMX20_01761 0.47 -2.1 1,852,408 + MPMX20_01761 0.47 -1.1 1,852,416 - MPMX20_01761 0.48 -0.8 1,852,416 - MPMX20_01761 0.48 -2.6 1,852,416 - MPMX20_01761 0.48 -1.3 1,852,416 - MPMX20_01761 0.48 -3.5 1,852,416 - MPMX20_01761 0.48 -2.7 1,852,416 - MPMX20_01761 0.48 -0.3 1,852,464 + MPMX20_01761 0.51 +1.1 1,852,502 + MPMX20_01761 0.53 -1.7 1,852,502 - MPMX20_01761 0.53 -2.8 1,852,505 - MPMX20_01761 0.53 -1.9 1,852,524 + MPMX20_01761 0.54 -0.6 1,852,524 + MPMX20_01761 0.54 -1.9 1,852,524 + MPMX20_01761 0.54 -0.2 1,852,524 + MPMX20_01761 0.54 -2.1 1,852,524 + MPMX20_01761 0.54 -1.9 1,852,531 - MPMX20_01761 0.55 -2.4 1,852,532 - MPMX20_01761 0.55 -2.1 1,852,532 - MPMX20_01761 0.55 -3.3 1,852,532 - MPMX20_01761 0.55 -2.0 1,852,546 - MPMX20_01761 0.56 -1.1 1,852,546 - MPMX20_01761 0.56 -2.9 1,852,551 - MPMX20_01761 0.56 -3.5 1,852,580 + MPMX20_01761 0.58 -1.6 1,852,602 - MPMX20_01761 0.59 -0.5 1,852,716 + MPMX20_01761 0.66 -2.1 1,852,742 + MPMX20_01761 0.67 -1.1 1,852,750 - MPMX20_01761 0.68 -0.8 1,852,766 + MPMX20_01761 0.69 -1.2 1,852,788 + MPMX20_01761 0.70 -3.0 1,852,788 + MPMX20_01761 0.70 -1.5 1,852,788 + MPMX20_01761 0.70 -0.9 1,852,788 + MPMX20_01761 0.70 +0.1 1,852,788 + MPMX20_01761 0.70 -3.2 1,852,796 - MPMX20_01761 0.71 -0.6 1,852,796 - MPMX20_01761 0.71 -1.5 1,852,796 - MPMX20_01761 0.71 +0.1 1,852,796 - MPMX20_01761 0.71 -2.1 1,852,829 - MPMX20_01761 0.73 -4.3 1,852,904 + MPMX20_01761 0.77 -0.5 1,852,933 + MPMX20_01761 0.79 -1.3 1,853,056 + MPMX20_01761 0.87 -0.9 1,853,156 + -2.8 1,853,157 + -0.2 1,853,157 + -2.6 1,853,165 - -1.2 1,853,182 - -2.6 1,853,211 - -2.2 1,853,211 - -1.8 1,853,278 - -0.7 1,853,282 + +3.3 1,853,284 - -1.8 1,853,290 - -3.3 1,853,371 + -1.2 1,853,553 - MPMX20_01762 0.28 -0.8 1,853,563 - MPMX20_01762 0.29 -0.6 1,853,753 - MPMX20_01762 0.49 -2.2 1,853,753 - MPMX20_01762 0.49 -1.9 1,853,778 + MPMX20_01762 0.51 -3.6 1,853,778 + MPMX20_01762 0.51 -1.7 1,853,786 - MPMX20_01762 0.52 +0.3 1,853,786 - MPMX20_01762 0.52 -0.6 1,853,786 - MPMX20_01762 0.52 -2.8 1,853,815 + MPMX20_01762 0.55 -1.5 1,853,815 + MPMX20_01762 0.55 -0.6 1,853,815 + MPMX20_01762 0.55 -1.7 1,853,815 + MPMX20_01762 0.55 -1.7 1,853,823 - MPMX20_01762 0.56 -2.2 1,853,823 - MPMX20_01762 0.56 -2.1 1,853,849 + MPMX20_01762 0.59 -1.1 1,853,857 - MPMX20_01762 0.59 -1.2 1,853,862 - MPMX20_01762 0.60 -1.1 1,853,867 - MPMX20_01762 0.60 -1.6 1,853,878 - MPMX20_01762 0.62 -0.3 1,853,967 - MPMX20_01762 0.71 -1.6 1,854,075 + MPMX20_01762 0.82 -0.7 1,854,083 - MPMX20_01762 0.83 -1.4 1,854,094 - MPMX20_01762 0.84 -1.5 1,854,096 + MPMX20_01762 0.84 -0.8 1,854,096 + MPMX20_01762 0.84 -2.5 1,854,096 + MPMX20_01762 0.84 -1.8 1,854,114 - MPMX20_01762 0.86 -2.3 1,854,245 + +0.1 1,854,252 - +1.1 1,854,255 + -0.1
Or see this region's nucleotide sequence