Experiment: Motility test in 1X LB; 1 day; inner cut; 0.3% agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01757 and MPMX20_01758 are separated by 57 nucleotides MPMX20_01758 and MPMX20_01759 are separated by 12 nucleotides MPMX20_01759 and MPMX20_01760 overlap by 1 nucleotides
MPMX20_01757: MPMX20_01757 - Flagellar basal-body rod protein FlgG, at 1,847,958 to 1,848,740
_01757
MPMX20_01758: MPMX20_01758 - Flagellar L-ring protein, at 1,848,798 to 1,849,496
_01758
MPMX20_01759: MPMX20_01759 - Flagellar P-ring protein, at 1,849,509 to 1,850,606
_01759
MPMX20_01760: MPMX20_01760 - Peptidoglycan hydrolase FlgJ, at 1,850,606 to 1,851,559
_01760
Position (kb)
1849
1850
1851 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1848.522 kb on - strand, within MPMX20_01757 at 1848.527 kb on + strand, within MPMX20_01757 at 1848.527 kb on - strand, within MPMX20_01757 at 1848.571 kb on + strand, within MPMX20_01757 at 1848.586 kb on + strand, within MPMX20_01757 at 1848.605 kb on + strand, within MPMX20_01757 at 1848.632 kb on - strand, within MPMX20_01757 at 1848.704 kb on - strand at 1848.734 kb on + strand at 1848.734 kb on + strand at 1848.734 kb on + strand at 1848.734 kb on + strand at 1848.742 kb on - strand at 1848.742 kb on - strand at 1848.742 kb on - strand at 1848.742 kb on - strand at 1848.742 kb on - strand at 1848.742 kb on - strand at 1848.742 kb on - strand at 1848.756 kb on + strand at 1848.764 kb on - strand at 1848.858 kb on + strand at 1848.867 kb on - strand at 1848.890 kb on - strand, within MPMX20_01758 at 1848.893 kb on + strand, within MPMX20_01758 at 1848.933 kb on + strand, within MPMX20_01758 at 1848.941 kb on - strand, within MPMX20_01758 at 1849.026 kb on + strand, within MPMX20_01758 at 1849.122 kb on + strand, within MPMX20_01758 at 1849.164 kb on + strand, within MPMX20_01758 at 1849.175 kb on - strand, within MPMX20_01758 at 1849.205 kb on - strand, within MPMX20_01758 at 1849.243 kb on + strand, within MPMX20_01758 at 1849.245 kb on - strand, within MPMX20_01758 at 1849.249 kb on + strand, within MPMX20_01758 at 1849.331 kb on - strand, within MPMX20_01758 at 1849.345 kb on + strand, within MPMX20_01758 at 1849.346 kb on + strand, within MPMX20_01758 at 1849.364 kb on - strand, within MPMX20_01758 at 1849.375 kb on + strand, within MPMX20_01758 at 1849.436 kb on - strand at 1849.511 kb on + strand at 1849.570 kb on - strand at 1849.646 kb on - strand, within MPMX20_01759 at 1849.725 kb on - strand, within MPMX20_01759 at 1849.861 kb on + strand, within MPMX20_01759 at 1849.871 kb on + strand, within MPMX20_01759 at 1849.871 kb on + strand, within MPMX20_01759 at 1849.879 kb on - strand, within MPMX20_01759 at 1849.879 kb on - strand, within MPMX20_01759 at 1849.879 kb on - strand, within MPMX20_01759 at 1849.961 kb on + strand, within MPMX20_01759 at 1849.967 kb on - strand, within MPMX20_01759 at 1849.967 kb on - strand, within MPMX20_01759 at 1849.997 kb on + strand, within MPMX20_01759 at 1850.059 kb on + strand, within MPMX20_01759 at 1850.059 kb on + strand, within MPMX20_01759 at 1850.067 kb on - strand, within MPMX20_01759 at 1850.067 kb on - strand, within MPMX20_01759 at 1850.067 kb on - strand, within MPMX20_01759 at 1850.095 kb on - strand, within MPMX20_01759 at 1850.174 kb on + strand, within MPMX20_01759 at 1850.182 kb on - strand, within MPMX20_01759 at 1850.226 kb on - strand, within MPMX20_01759 at 1850.295 kb on + strand, within MPMX20_01759 at 1850.326 kb on + strand, within MPMX20_01759 at 1850.347 kb on - strand, within MPMX20_01759 at 1850.384 kb on + strand, within MPMX20_01759 at 1850.470 kb on + strand, within MPMX20_01759 at 1850.478 kb on - strand, within MPMX20_01759 at 1850.489 kb on + strand, within MPMX20_01759 at 1850.497 kb on - strand at 1850.626 kb on + strand at 1850.681 kb on + strand at 1850.681 kb on + strand at 1850.689 kb on - strand at 1850.796 kb on - strand, within MPMX20_01760 at 1850.796 kb on - strand, within MPMX20_01760 at 1850.843 kb on + strand, within MPMX20_01760 at 1850.865 kb on + strand, within MPMX20_01760 at 1850.904 kb on - strand, within MPMX20_01760 at 1850.913 kb on + strand, within MPMX20_01760 at 1850.991 kb on - strand, within MPMX20_01760 at 1851.014 kb on + strand, within MPMX20_01760 at 1851.118 kb on - strand, within MPMX20_01760 at 1851.152 kb on + strand, within MPMX20_01760 at 1851.163 kb on + strand, within MPMX20_01760 at 1851.251 kb on - strand, within MPMX20_01760 at 1851.255 kb on + strand, within MPMX20_01760 at 1851.301 kb on + strand, within MPMX20_01760 at 1851.301 kb on + strand, within MPMX20_01760 at 1851.354 kb on + strand, within MPMX20_01760 at 1851.359 kb on + strand, within MPMX20_01760 at 1851.362 kb on - strand, within MPMX20_01760 at 1851.362 kb on - strand, within MPMX20_01760 at 1851.400 kb on + strand, within MPMX20_01760 at 1851.408 kb on + strand, within MPMX20_01760 at 1851.431 kb on - strand, within MPMX20_01760 at 1851.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility test in 1X LB; 1 day; inner cut; 0.3% agar remove 1,848,522 - MPMX20_01757 0.72 -0.1 1,848,527 + MPMX20_01757 0.73 -0.8 1,848,527 - MPMX20_01757 0.73 -1.2 1,848,571 + MPMX20_01757 0.78 -1.3 1,848,586 + MPMX20_01757 0.80 -0.5 1,848,605 + MPMX20_01757 0.83 -0.9 1,848,632 - MPMX20_01757 0.86 -1.7 1,848,704 - +1.5 1,848,734 + +0.8 1,848,734 + -0.8 1,848,734 + -1.0 1,848,734 + +1.4 1,848,742 - -0.2 1,848,742 - -0.3 1,848,742 - -3.4 1,848,742 - -0.9 1,848,742 - -1.4 1,848,742 - -2.6 1,848,742 - -1.9 1,848,756 + +2.1 1,848,764 - -1.7 1,848,858 + +0.1 1,848,867 - +0.4 1,848,890 - MPMX20_01758 0.13 -1.6 1,848,893 + MPMX20_01758 0.14 -0.2 1,848,933 + MPMX20_01758 0.19 -0.7 1,848,941 - MPMX20_01758 0.20 -1.2 1,849,026 + MPMX20_01758 0.33 -0.7 1,849,122 + MPMX20_01758 0.46 -0.7 1,849,164 + MPMX20_01758 0.52 -1.0 1,849,175 - MPMX20_01758 0.54 -3.4 1,849,205 - MPMX20_01758 0.58 -0.9 1,849,243 + MPMX20_01758 0.64 -0.7 1,849,245 - MPMX20_01758 0.64 -0.5 1,849,249 + MPMX20_01758 0.65 -1.3 1,849,331 - MPMX20_01758 0.76 -0.7 1,849,345 + MPMX20_01758 0.78 -1.5 1,849,346 + MPMX20_01758 0.78 -0.5 1,849,364 - MPMX20_01758 0.81 -2.0 1,849,375 + MPMX20_01758 0.83 -1.1 1,849,436 - -0.2 1,849,511 + -0.5 1,849,570 - -1.0 1,849,646 - MPMX20_01759 0.12 -2.7 1,849,725 - MPMX20_01759 0.20 -1.8 1,849,861 + MPMX20_01759 0.32 -1.4 1,849,871 + MPMX20_01759 0.33 -2.3 1,849,871 + MPMX20_01759 0.33 -1.9 1,849,879 - MPMX20_01759 0.34 -1.2 1,849,879 - MPMX20_01759 0.34 -1.1 1,849,879 - MPMX20_01759 0.34 -2.5 1,849,961 + MPMX20_01759 0.41 -3.0 1,849,967 - MPMX20_01759 0.42 -0.1 1,849,967 - MPMX20_01759 0.42 -1.2 1,849,997 + MPMX20_01759 0.44 -0.9 1,850,059 + MPMX20_01759 0.50 -1.6 1,850,059 + MPMX20_01759 0.50 +1.1 1,850,067 - MPMX20_01759 0.51 -0.8 1,850,067 - MPMX20_01759 0.51 -1.7 1,850,067 - MPMX20_01759 0.51 -1.9 1,850,095 - MPMX20_01759 0.53 -3.6 1,850,174 + MPMX20_01759 0.61 -0.9 1,850,182 - MPMX20_01759 0.61 -0.1 1,850,226 - MPMX20_01759 0.65 +0.4 1,850,295 + MPMX20_01759 0.72 -2.1 1,850,326 + MPMX20_01759 0.74 -1.9 1,850,347 - MPMX20_01759 0.76 -2.1 1,850,384 + MPMX20_01759 0.80 -1.9 1,850,470 + MPMX20_01759 0.88 -0.6 1,850,478 - MPMX20_01759 0.88 -0.5 1,850,489 + MPMX20_01759 0.89 +2.1 1,850,497 - -0.0 1,850,626 + +0.4 1,850,681 + -0.5 1,850,681 + -1.0 1,850,689 - -1.2 1,850,796 - MPMX20_01760 0.20 -1.1 1,850,796 - MPMX20_01760 0.20 +0.3 1,850,843 + MPMX20_01760 0.25 -0.8 1,850,865 + MPMX20_01760 0.27 +0.2 1,850,904 - MPMX20_01760 0.31 -2.1 1,850,913 + MPMX20_01760 0.32 -2.1 1,850,991 - MPMX20_01760 0.40 +0.1 1,851,014 + MPMX20_01760 0.43 -1.9 1,851,118 - MPMX20_01760 0.54 -1.1 1,851,152 + MPMX20_01760 0.57 -0.3 1,851,163 + MPMX20_01760 0.58 -1.2 1,851,251 - MPMX20_01760 0.68 -0.3 1,851,255 + MPMX20_01760 0.68 -1.5 1,851,301 + MPMX20_01760 0.73 -2.7 1,851,301 + MPMX20_01760 0.73 +0.4 1,851,354 + MPMX20_01760 0.78 -1.3 1,851,359 + MPMX20_01760 0.79 -0.9 1,851,362 - MPMX20_01760 0.79 -1.2 1,851,362 - MPMX20_01760 0.79 -2.7 1,851,400 + MPMX20_01760 0.83 +1.0 1,851,408 + MPMX20_01760 0.84 +1.1 1,851,431 - MPMX20_01760 0.86 -2.1 1,851,517 + -0.5
Or see this region's nucleotide sequence