Experiment: 7H9 with Clarithromycin 0.967 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0270 and Rv0271c are separated by 16 nucleotides Rv0271c and Rv0272c are separated by 113 nucleotides
Rv0270: Rv0270 - Probable fatty-acid-CoA ligase FadD2 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 324,567 to 326,249
Rv0270
Rv0271c: Rv0271c - Probable acyl-CoA dehydrogenase FadE6, at 326,266 to 328,461
Rv0271c
Rv0272c: Rv0272c - Unknown protein, at 328,575 to 329,708
Rv0272c
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 325.507 kb on + strand, within Rv0270 at 325.508 kb on - strand, within Rv0270 at 325.508 kb on - strand, within Rv0270 at 325.508 kb on - strand, within Rv0270 at 325.656 kb on + strand, within Rv0270 at 325.666 kb on - strand, within Rv0270 at 325.909 kb on - strand, within Rv0270 at 325.932 kb on + strand, within Rv0270 at 325.933 kb on - strand, within Rv0270 at 325.933 kb on - strand, within Rv0270 at 326.058 kb on - strand, within Rv0270 at 326.136 kb on + strand at 326.137 kb on - strand at 326.140 kb on + strand at 326.141 kb on - strand at 326.160 kb on + strand at 326.160 kb on + strand at 326.198 kb on - strand at 326.237 kb on - strand at 326.247 kb on + strand at 326.247 kb on + strand at 326.247 kb on + strand at 326.267 kb on + strand at 326.282 kb on - strand at 326.282 kb on - strand at 326.336 kb on + strand at 326.336 kb on + strand at 326.367 kb on - strand at 326.367 kb on - strand at 326.447 kb on + strand at 326.625 kb on - strand, within Rv0271c at 326.786 kb on + strand, within Rv0271c at 326.787 kb on - strand, within Rv0271c at 326.937 kb on - strand, within Rv0271c at 327.429 kb on - strand, within Rv0271c at 327.755 kb on + strand, within Rv0271c at 327.755 kb on + strand, within Rv0271c at 327.755 kb on + strand, within Rv0271c at 327.756 kb on - strand, within Rv0271c at 327.964 kb on + strand, within Rv0271c at 327.965 kb on - strand, within Rv0271c at 327.965 kb on - strand, within Rv0271c at 328.000 kb on + strand, within Rv0271c at 328.099 kb on + strand, within Rv0271c at 328.100 kb on - strand, within Rv0271c at 328.249 kb on + strand at 328.433 kb on + strand at 328.434 kb on - strand at 328.449 kb on + strand at 328.450 kb on - strand at 328.648 kb on + strand at 328.703 kb on - strand, within Rv0272c at 328.970 kb on + strand, within Rv0272c at 329.239 kb on + strand, within Rv0272c at 329.240 kb on - strand, within Rv0272c at 329.285 kb on + strand, within Rv0272c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clarithromycin 0.967 ug/mL remove 325,507 + Rv0270 0.56 -0.2 325,508 - Rv0270 0.56 +0.9 325,508 - Rv0270 0.56 +0.2 325,508 - Rv0270 0.56 -0.1 325,656 + Rv0270 0.65 -0.6 325,666 - Rv0270 0.65 -1.0 325,909 - Rv0270 0.80 -0.8 325,932 + Rv0270 0.81 +0.5 325,933 - Rv0270 0.81 -0.1 325,933 - Rv0270 0.81 -2.7 326,058 - Rv0270 0.89 +0.6 326,136 + -0.4 326,137 - -0.2 326,140 + -2.1 326,141 - -1.1 326,160 + -0.6 326,160 + +2.0 326,198 - -0.2 326,237 - -0.3 326,247 + -0.0 326,247 + -0.1 326,247 + +0.0 326,267 + -1.2 326,282 - +0.0 326,282 - -0.1 326,336 + +0.6 326,336 + -0.2 326,367 - +0.9 326,367 - -0.2 326,447 + -0.8 326,625 - Rv0271c 0.16 +1.1 326,786 + Rv0271c 0.24 +0.4 326,787 - Rv0271c 0.24 -0.1 326,937 - Rv0271c 0.31 +0.5 327,429 - Rv0271c 0.53 +0.4 327,755 + Rv0271c 0.68 -0.3 327,755 + Rv0271c 0.68 +0.1 327,755 + Rv0271c 0.68 -0.1 327,756 - Rv0271c 0.68 +0.4 327,964 + Rv0271c 0.77 +1.2 327,965 - Rv0271c 0.77 +0.9 327,965 - Rv0271c 0.77 +0.5 328,000 + Rv0271c 0.79 -0.3 328,099 + Rv0271c 0.83 -0.0 328,100 - Rv0271c 0.84 +0.9 328,249 + -0.2 328,433 + +0.8 328,434 - +0.4 328,449 + -0.6 328,450 - +0.9 328,648 + +0.0 328,703 - Rv0272c 0.11 +0.1 328,970 + Rv0272c 0.35 -0.3 329,239 + Rv0272c 0.59 +0.2 329,240 - Rv0272c 0.59 +1.3 329,285 + Rv0272c 0.63 -1.1
Or see this region's nucleotide sequence