Experiment: 7H9 with Clarithromycin 0.967 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0231 and Rv0232 are separated by 134 nucleotides Rv0232 and Rv0233 overlap by 4 nucleotides
Rv0231: Rv0231 - Probable acyl-CoA dehydrogenase FadE4, at 276,058 to 277,764
Rv0231
Rv0232: Rv0232 - Probable transcriptional regulatory protein (probably TetR/AcrR-family), at 277,899 to 278,588
Rv0232
Rv0233: Rv0233 - Ribonucleoside-diphosphate reductase (beta chain) NrdB (ribonucleotide reductase small chain), at 278,585 to 279,529
Rv0233
Position (kb) 277
278
279 Strain fitness (log2 ratio) -2
-1
0
1
2 at 276.940 kb on + strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.988 kb on + strand, within Rv0231 at 276.989 kb on - strand, within Rv0231 at 277.202 kb on + strand, within Rv0231 at 277.225 kb on + strand, within Rv0231 at 277.226 kb on - strand, within Rv0231 at 277.226 kb on - strand, within Rv0231 at 277.510 kb on + strand, within Rv0231 at 277.748 kb on - strand at 277.762 kb on + strand at 277.763 kb on - strand at 277.763 kb on - strand at 278.011 kb on + strand, within Rv0232 at 278.052 kb on + strand, within Rv0232 at 278.053 kb on - strand, within Rv0232 at 278.053 kb on - strand, within Rv0232 at 278.076 kb on + strand, within Rv0232 at 278.084 kb on + strand, within Rv0232 at 278.118 kb on + strand, within Rv0232 at 278.118 kb on + strand, within Rv0232 at 278.119 kb on - strand, within Rv0232 at 278.119 kb on - strand, within Rv0232 at 278.119 kb on - strand, within Rv0232 at 278.430 kb on + strand, within Rv0232 at 278.430 kb on + strand, within Rv0232 at 278.430 kb on + strand, within Rv0232 at 278.431 kb on - strand, within Rv0232 at 278.431 kb on - strand, within Rv0232 at 278.431 kb on - strand, within Rv0232 at 278.431 kb on - strand, within Rv0232 at 278.750 kb on + strand, within Rv0233 at 278.750 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.954 kb on + strand, within Rv0233 at 278.954 kb on + strand, within Rv0233 at 278.954 kb on + strand, within Rv0233 at 279.068 kb on + strand, within Rv0233 at 279.069 kb on - strand, within Rv0233 at 279.110 kb on + strand, within Rv0233 at 279.110 kb on + strand, within Rv0233 at 279.111 kb on - strand, within Rv0233 at 279.378 kb on - strand, within Rv0233 at 279.378 kb on - strand, within Rv0233 at 279.458 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clarithromycin 0.967 ug/mL remove 276,940 + Rv0231 0.52 +0.3 276,941 - Rv0231 0.52 +0.1 276,941 - Rv0231 0.52 +0.4 276,941 - Rv0231 0.52 +0.7 276,988 + Rv0231 0.54 +1.9 276,989 - Rv0231 0.55 +0.2 277,202 + Rv0231 0.67 -0.2 277,225 + Rv0231 0.68 +0.0 277,226 - Rv0231 0.68 +0.4 277,226 - Rv0231 0.68 -0.2 277,510 + Rv0231 0.85 -0.2 277,748 - -0.3 277,762 + -0.3 277,763 - -0.6 277,763 - -2.3 278,011 + Rv0232 0.16 -0.5 278,052 + Rv0232 0.22 +0.0 278,053 - Rv0232 0.22 -0.1 278,053 - Rv0232 0.22 -0.7 278,076 + Rv0232 0.26 -0.3 278,084 + Rv0232 0.27 -0.9 278,118 + Rv0232 0.32 +0.1 278,118 + Rv0232 0.32 -0.5 278,119 - Rv0232 0.32 +0.0 278,119 - Rv0232 0.32 -0.0 278,119 - Rv0232 0.32 -0.2 278,430 + Rv0232 0.77 -0.7 278,430 + Rv0232 0.77 -0.8 278,430 + Rv0232 0.77 -0.7 278,431 - Rv0232 0.77 -0.3 278,431 - Rv0232 0.77 -0.5 278,431 - Rv0232 0.77 -0.3 278,431 - Rv0232 0.77 -0.9 278,750 + Rv0233 0.17 -1.1 278,750 + Rv0233 0.17 -1.3 278,861 + Rv0233 0.29 -0.3 278,861 + Rv0233 0.29 -0.3 278,861 + Rv0233 0.29 -0.4 278,861 + Rv0233 0.29 +0.3 278,861 + Rv0233 0.29 -0.4 278,862 - Rv0233 0.29 +0.3 278,862 - Rv0233 0.29 -0.4 278,862 - Rv0233 0.29 -0.7 278,862 - Rv0233 0.29 -0.5 278,862 - Rv0233 0.29 +1.1 278,862 - Rv0233 0.29 -0.3 278,954 + Rv0233 0.39 -0.3 278,954 + Rv0233 0.39 -0.9 278,954 + Rv0233 0.39 -0.0 279,068 + Rv0233 0.51 +1.1 279,069 - Rv0233 0.51 -0.8 279,110 + Rv0233 0.56 -0.9 279,110 + Rv0233 0.56 -0.4 279,111 - Rv0233 0.56 +0.0 279,378 - Rv0233 0.84 -0.7 279,378 - Rv0233 0.84 +0.0 279,458 + +0.0
Or see this region's nucleotide sequence