Experiment: 7H9 with Clarithromycin 0.967 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0206c and Rv0207c are separated by 65 nucleotides Rv0207c and Rv0208c are separated by 2 nucleotides Rv0208c and Rv0209 are separated by 131 nucleotides
Rv0206c: Rv0206c - Possible conserved transmembrane transport protein MmpL3, at 244,484 to 247,318
Rv0206c
Rv0207c: Rv0207c - Conserved hypothetical protein, at 247,384 to 248,112
Rv0207c
Rv0208c: Rv0208c - Hypothetical methlytransferase (methylase), at 248,115 to 248,906
Rv0208c
Rv0209: Rv0209 - Hypothetical protein, at 249,038 to 250,123
Rv0209
Position (kb) 248
249 Strain fitness (log2 ratio) -2
-1
0
1 at 247.723 kb on + strand, within Rv0207c at 247.724 kb on - strand, within Rv0207c at 247.724 kb on - strand, within Rv0207c at 248.053 kb on + strand at 248.120 kb on + strand at 248.206 kb on + strand, within Rv0208c at 248.206 kb on + strand, within Rv0208c at 248.311 kb on + strand, within Rv0208c at 248.392 kb on - strand, within Rv0208c at 248.581 kb on + strand, within Rv0208c at 248.734 kb on - strand, within Rv0208c at 248.862 kb on + strand at 248.863 kb on - strand at 249.282 kb on - strand, within Rv0209 at 249.436 kb on + strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.619 kb on - strand, within Rv0209
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clarithromycin 0.967 ug/mL remove 247,723 + Rv0207c 0.47 -2.5 247,724 - Rv0207c 0.47 +0.2 247,724 - Rv0207c 0.47 -0.5 248,053 + -0.0 248,120 + +0.8 248,206 + Rv0208c 0.11 -0.1 248,206 + Rv0208c 0.11 -1.5 248,311 + Rv0208c 0.25 -0.0 248,392 - Rv0208c 0.35 +1.5 248,581 + Rv0208c 0.59 -1.1 248,734 - Rv0208c 0.78 -1.4 248,862 + -0.3 248,863 - +0.1 249,282 - Rv0209 0.22 +0.2 249,436 + Rv0209 0.37 +0.1 249,437 - Rv0209 0.37 -0.8 249,437 - Rv0209 0.37 -0.2 249,619 - Rv0209 0.53 -0.9
Or see this region's nucleotide sequence