Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3897c

Experiment: 7H9 with Clarithromycin 0.967 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clarithromycin 0.967 ug/mL
4,382,037	+		Rv3896c	0.10	-0.3
4,382,037	+		Rv3896c	0.10	-0.4
4,382,037	+		Rv3896c	0.10	-1.5
4,382,103	+		Rv3896c	0.18	+2.5
4,382,183	+		Rv3896c	0.26	+0.3
4,382,199	+		Rv3896c	0.28	-1.1
4,382,334	-		Rv3896c	0.43	-1.6
4,382,334	-		Rv3896c	0.43	-0.0
4,382,413	+		Rv3896c	0.52	+0.0
4,382,413	+		Rv3896c	0.52	-0.5
4,382,653	-		Rv3896c	0.78	-1.3
4,382,653	-		Rv3896c	0.78	+0.9
4,382,937	+				+0.4
4,382,937	+				-0.3
4,382,937	+				-0.2
4,382,938	-				-1.7
4,382,938	-				-0.3
4,383,002	+				+0.5
4,383,010	-				-0.4
4,383,175	+		Rv3897c	0.26	+0.5
4,383,492	+		Rv3897c	0.76	+0.9
4,383,755	+		Rv3898c	0.31	-0.4
4,383,755	+		Rv3898c	0.31	+0.4
4,383,755	+		Rv3898c	0.31	+0.5
4,383,756	-		Rv3898c	0.31	+0.9
4,383,756	-		Rv3898c	0.31	+0.6
4,383,802	+		Rv3898c	0.45	-0.2
4,383,848	+		Rv3898c	0.59	-0.8
4,383,854	+		Rv3898c	0.60	-0.1
4,383,915	-		Rv3898c	0.79	-0.4
4,383,915	-		Rv3898c	0.79	-0.1
4,384,010	-				+0.2
4,384,193	+				-0.9
4,384,193	+				-0.1
4,384,193	+				-0.2
4,384,194	-				-0.4
4,384,194	-				-0.0
4,384,194	-				-0.3
4,384,208	+				-0.8
4,384,208	+				-0.5
4,384,208	+				+0.0
4,384,209	-				-0.3
4,384,209	-				+3.2
4,384,220	+				-1.0
4,384,220	+				+0.4
4,384,298	+		Rv3899c	0.12	+0.1
4,384,298	+		Rv3899c	0.12	-0.7
4,384,422	+		Rv3899c	0.22	-2.3
4,384,541	+		Rv3899c	0.32	+0.6
4,384,541	+		Rv3899c	0.32	-0.1
4,384,541	+		Rv3899c	0.32	+0.2
4,384,541	+		Rv3899c	0.32	-0.1
4,384,541	+		Rv3899c	0.32	-0.0
4,384,542	-		Rv3899c	0.32	+0.0
4,384,542	-		Rv3899c	0.32	-0.5
4,384,542	-		Rv3899c	0.32	+0.5
4,384,542	-		Rv3899c	0.32	-0.7
4,384,542	-		Rv3899c	0.32	-0.0
4,384,542	-		Rv3899c	0.32	-0.1