Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1907c

Experiment: 7H9 with Clarithromycin 0.967 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clarithromycin 0.967 ug/mL
2,152,330	+				-1.7
2,152,330	+				+0.2
2,152,331	-				+0.9
2,152,387	+				+0.9
2,152,387	+				-0.7
2,152,388	-				+0.1
2,152,388	-				+0.4
2,152,388	-				+0.5
2,152,388	-				+3.2
2,152,491	+		Rv1906c	0.14	-0.0
2,152,491	+		Rv1906c	0.14	+0.1
2,152,492	-		Rv1906c	0.14	+0.2
2,152,492	-		Rv1906c	0.14	+0.1
2,152,612	-		Rv1906c	0.40	+0.3
2,152,678	+		Rv1906c	0.54	-0.1
2,152,748	-		Rv1906c	0.69	+0.9
2,152,748	-		Rv1906c	0.69	-0.4
2,152,903	+				+0.2
2,152,903	+				+0.1
2,152,903	+				+0.3
2,152,904	-				-0.6
2,152,909	-				-0.2
2,152,994	+				-0.1
2,152,994	+				+0.2
2,153,125	+				-0.3
2,153,386	+		Rv1907c	0.23	-0.1
2,153,387	-		Rv1907c	0.23	-1.7
2,153,408	+		Rv1907c	0.27	+0.0
2,153,409	-		Rv1907c	0.27	-1.1
2,153,619	+		Rv1907c	0.59	-1.3
2,153,665	+		Rv1907c	0.66	-0.7
2,153,665	+		Rv1907c	0.66	-1.6
2,153,666	-		Rv1907c	0.67	+0.0
2,153,981	-				-0.1
2,154,289	+		Rv1908c	0.18	-1.0
2,154,835	+		Rv1908c	0.43	-0.1