Experiment: 7H9 with Clarithromycin 0.967 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv1882c and Rv1883c are separated by 27 nucleotides Rv1883c and Rv1884c are separated by 38 nucleotides Rv1884c and Rv1885c are separated by 11 nucleotides Rv1885c and Rv1886c are separated by 17 nucleotides
Rv1882c: Rv1882c - Probable short-chain type dehydrogenase/reductase, at 2,132,370 to 2,133,203
Rv1882c
Rv1883c: Rv1883c - Conserved hypothetical protein, at 2,133,231 to 2,133,692
Rv1883c
Rv1884c: Rv1884c - Probable resuscitation-promoting factor RpfC, at 2,133,731 to 2,134,261
Rv1884c
Rv1885c: Rv1885c - Chorismate mutase, at 2,134,273 to 2,134,872
Rv1885c
Rv1886c: Rv1886c - Secreted antigen 85-B FbpB (85B) (antigen 85 complex B) (mycolyl transferase 85B) (fibronectin-binding protein B) (extracellular alpha-antigen), at 2,134,890 to 2,135,867
Rv1886c
Position (kb)
2133
2134
2135 Strain fitness (log2 ratio)
-2
-1
0
1 at 2132.755 kb on + strand, within Rv1882c at 2132.766 kb on - strand, within Rv1882c at 2132.779 kb on + strand, within Rv1882c at 2132.779 kb on + strand, within Rv1882c at 2132.779 kb on + strand, within Rv1882c at 2132.780 kb on - strand, within Rv1882c at 2132.780 kb on - strand, within Rv1882c at 2132.780 kb on - strand, within Rv1882c at 2132.780 kb on - strand, within Rv1882c at 2132.780 kb on - strand, within Rv1882c at 2132.836 kb on + strand, within Rv1882c at 2132.836 kb on + strand, within Rv1882c at 2132.836 kb on + strand, within Rv1882c at 2132.837 kb on - strand, within Rv1882c at 2132.837 kb on - strand, within Rv1882c at 2132.851 kb on + strand, within Rv1882c at 2133.075 kb on + strand, within Rv1882c at 2133.076 kb on - strand, within Rv1882c at 2133.112 kb on - strand, within Rv1882c at 2133.120 kb on + strand at 2133.120 kb on + strand at 2133.120 kb on + strand at 2133.120 kb on + strand at 2133.121 kb on - strand at 2133.325 kb on + strand, within Rv1883c at 2133.325 kb on + strand, within Rv1883c at 2133.325 kb on + strand, within Rv1883c at 2133.326 kb on - strand, within Rv1883c at 2133.326 kb on - strand, within Rv1883c at 2133.328 kb on + strand, within Rv1883c at 2133.329 kb on - strand, within Rv1883c at 2133.329 kb on - strand, within Rv1883c at 2133.406 kb on + strand, within Rv1883c at 2133.474 kb on + strand, within Rv1883c at 2133.474 kb on + strand, within Rv1883c at 2133.692 kb on + strand at 2133.692 kb on + strand at 2133.693 kb on - strand at 2133.693 kb on - strand at 2133.708 kb on + strand at 2134.193 kb on + strand, within Rv1884c at 2134.298 kb on + strand at 2134.339 kb on - strand, within Rv1885c at 2134.449 kb on + strand, within Rv1885c at 2134.483 kb on + strand, within Rv1885c at 2134.483 kb on + strand, within Rv1885c at 2134.484 kb on - strand, within Rv1885c at 2134.544 kb on + strand, within Rv1885c at 2134.596 kb on - strand, within Rv1885c at 2134.796 kb on - strand, within Rv1885c at 2134.847 kb on + strand at 2134.849 kb on + strand at 2134.849 kb on + strand at 2134.849 kb on + strand at 2134.850 kb on - strand at 2134.850 kb on - strand at 2134.850 kb on - strand at 2134.850 kb on - strand at 2134.850 kb on - strand at 2134.850 kb on - strand at 2134.952 kb on - strand at 2135.017 kb on + strand, within Rv1886c at 2135.017 kb on + strand, within Rv1886c at 2135.017 kb on + strand, within Rv1886c at 2135.017 kb on + strand, within Rv1886c at 2135.017 kb on + strand, within Rv1886c at 2135.018 kb on - strand, within Rv1886c at 2135.018 kb on - strand, within Rv1886c at 2135.018 kb on - strand, within Rv1886c at 2135.018 kb on - strand, within Rv1886c at 2135.076 kb on + strand, within Rv1886c at 2135.076 kb on + strand, within Rv1886c at 2135.076 kb on + strand, within Rv1886c at 2135.077 kb on - strand, within Rv1886c at 2135.077 kb on - strand, within Rv1886c at 2135.077 kb on - strand, within Rv1886c at 2135.168 kb on + strand, within Rv1886c at 2135.169 kb on - strand, within Rv1886c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clarithromycin 0.967 ug/mL remove 2,132,755 + Rv1882c 0.46 +0.5 2,132,766 - Rv1882c 0.47 -0.1 2,132,779 + Rv1882c 0.49 -0.0 2,132,779 + Rv1882c 0.49 -0.2 2,132,779 + Rv1882c 0.49 -1.9 2,132,780 - Rv1882c 0.49 +0.2 2,132,780 - Rv1882c 0.49 -0.0 2,132,780 - Rv1882c 0.49 +0.3 2,132,780 - Rv1882c 0.49 -0.9 2,132,780 - Rv1882c 0.49 +0.3 2,132,836 + Rv1882c 0.56 -0.7 2,132,836 + Rv1882c 0.56 -0.1 2,132,836 + Rv1882c 0.56 -0.1 2,132,837 - Rv1882c 0.56 -2.0 2,132,837 - Rv1882c 0.56 +0.5 2,132,851 + Rv1882c 0.58 -0.5 2,133,075 + Rv1882c 0.85 +0.5 2,133,076 - Rv1882c 0.85 +1.5 2,133,112 - Rv1882c 0.89 -0.1 2,133,120 + -0.1 2,133,120 + +1.6 2,133,120 + -0.3 2,133,120 + +0.2 2,133,121 - +0.7 2,133,325 + Rv1883c 0.20 -0.0 2,133,325 + Rv1883c 0.20 -0.4 2,133,325 + Rv1883c 0.20 -0.1 2,133,326 - Rv1883c 0.21 +0.2 2,133,326 - Rv1883c 0.21 -0.4 2,133,328 + Rv1883c 0.21 -0.2 2,133,329 - Rv1883c 0.21 -0.6 2,133,329 - Rv1883c 0.21 -1.0 2,133,406 + Rv1883c 0.38 -0.3 2,133,474 + Rv1883c 0.53 -0.0 2,133,474 + Rv1883c 0.53 -0.3 2,133,692 + -0.0 2,133,692 + -0.2 2,133,693 - -0.6 2,133,693 - +0.3 2,133,708 + -0.4 2,134,193 + Rv1884c 0.87 +0.3 2,134,298 + -0.5 2,134,339 - Rv1885c 0.11 -0.4 2,134,449 + Rv1885c 0.29 -0.7 2,134,483 + Rv1885c 0.35 -0.5 2,134,483 + Rv1885c 0.35 -0.5 2,134,484 - Rv1885c 0.35 -0.3 2,134,544 + Rv1885c 0.45 -0.0 2,134,596 - Rv1885c 0.54 -0.2 2,134,796 - Rv1885c 0.87 +1.0 2,134,847 + +1.7 2,134,849 + -0.7 2,134,849 + -0.6 2,134,849 + -0.7 2,134,850 - +1.1 2,134,850 - +0.7 2,134,850 - -0.2 2,134,850 - -0.0 2,134,850 - -2.5 2,134,850 - -0.2 2,134,952 - -0.2 2,135,017 + Rv1886c 0.13 -0.9 2,135,017 + Rv1886c 0.13 -0.7 2,135,017 + Rv1886c 0.13 -0.4 2,135,017 + Rv1886c 0.13 -0.6 2,135,017 + Rv1886c 0.13 -0.6 2,135,018 - Rv1886c 0.13 -0.9 2,135,018 - Rv1886c 0.13 -0.4 2,135,018 - Rv1886c 0.13 -0.8 2,135,018 - Rv1886c 0.13 -0.6 2,135,076 + Rv1886c 0.19 -1.1 2,135,076 + Rv1886c 0.19 -0.9 2,135,076 + Rv1886c 0.19 -0.0 2,135,077 - Rv1886c 0.19 -0.3 2,135,077 - Rv1886c 0.19 -0.7 2,135,077 - Rv1886c 0.19 -1.4 2,135,168 + Rv1886c 0.28 -0.5 2,135,169 - Rv1886c 0.29 -0.8
Or see this region's nucleotide sequence