Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1002c

Experiment: 7H9 with Clarithromycin 0.967 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Clarithromycin 0.967 ug/mL
1,117,515	-		Rv1001	0.27	-0.7
1,117,613	+		Rv1001	0.35	+0.1
1,117,721	-		Rv1001	0.44	+0.4
1,117,761	+		Rv1001	0.48	+0.9
1,117,761	+		Rv1001	0.48	-0.0
1,117,762	-		Rv1001	0.48	-0.3
1,117,762	-		Rv1001	0.48	+0.9
1,117,762	-		Rv1001	0.48	-0.2
1,117,762	-		Rv1001	0.48	+0.2
1,117,762	-		Rv1001	0.48	-0.2
1,117,800	+		Rv1001	0.51	+0.4
1,118,021	+		Rv1001	0.69	-0.8
1,118,022	-		Rv1001	0.69	-0.0
1,118,269	+		Rv1001	0.90	-0.2
1,118,270	-		Rv1001	0.90	-0.4
1,118,270	-		Rv1001	0.90	-0.2
1,118,392	-				-0.6
1,120,009	+				+0.9
1,120,010	-				-0.3
1,120,360	-		Rv1003	0.39	-0.9
1,120,878	-				+0.4
1,120,878	-				-1.9
1,120,890	+				-0.2
1,120,897	+				+0.1
1,120,897	+				-1.4
1,120,897	+				+0.5
1,120,898	-				+0.7