Experiment: 7H9 with Clarithromycin 0.967 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0929 and Rv0930 overlap by 4 nucleotides Rv0930 and Rv0931c overlap by 6 nucleotides Rv0931c and Rv0932c are separated by 21 nucleotides
Rv0929: Rv0929 - Phosphate-transport integral membrane ABC transporter PstC2, at 1,036,028 to 1,037,002
Rv0929
Rv0930: Rv0930 - Probable phosphate-transport integral membrane ABC transporter PstA1, at 1,036,999 to 1,037,925
Rv0930
Rv0931c: Rv0931c - Transmembrane serine/threonine-protein kinase D PknD (protein kinase D) (STPK D), at 1,037,920 to 1,039,914
Rv0931c
Rv0932c: Rv0932c - Periplasmic phosphate-binding lipoprotein PstS2 (PBP-2) (PstS2), at 1,039,936 to 1,041,048
Rv0932c
Position (kb) 1037
1038
1039
1040 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1037.065 kb on - strand at 1037.254 kb on + strand, within Rv0930 at 1037.255 kb on - strand, within Rv0930 at 1037.266 kb on + strand, within Rv0930 at 1037.335 kb on + strand, within Rv0930 at 1037.335 kb on + strand, within Rv0930 at 1037.336 kb on - strand, within Rv0930 at 1037.377 kb on - strand, within Rv0930 at 1037.412 kb on + strand, within Rv0930 at 1037.427 kb on - strand, within Rv0930 at 1037.779 kb on + strand, within Rv0930 at 1037.780 kb on - strand, within Rv0930 at 1037.966 kb on + strand at 1037.966 kb on + strand at 1037.966 kb on + strand at 1038.092 kb on + strand at 1038.092 kb on + strand at 1038.093 kb on - strand at 1038.219 kb on - strand, within Rv0931c at 1038.344 kb on + strand, within Rv0931c at 1038.344 kb on + strand, within Rv0931c at 1038.344 kb on + strand, within Rv0931c at 1038.345 kb on - strand, within Rv0931c at 1038.345 kb on - strand, within Rv0931c at 1038.345 kb on - strand, within Rv0931c at 1038.384 kb on - strand, within Rv0931c at 1038.384 kb on - strand, within Rv0931c at 1038.467 kb on + strand, within Rv0931c at 1038.467 kb on + strand, within Rv0931c at 1038.467 kb on + strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.468 kb on - strand, within Rv0931c at 1038.469 kb on + strand, within Rv0931c at 1038.510 kb on - strand, within Rv0931c at 1038.576 kb on - strand, within Rv0931c at 1038.576 kb on - strand, within Rv0931c at 1038.576 kb on - strand, within Rv0931c at 1038.597 kb on - strand, within Rv0931c at 1038.597 kb on - strand, within Rv0931c at 1038.710 kb on - strand, within Rv0931c at 1039.205 kb on - strand, within Rv0931c at 1039.234 kb on + strand, within Rv0931c at 1039.235 kb on - strand, within Rv0931c at 1039.235 kb on - strand, within Rv0931c at 1039.235 kb on - strand, within Rv0931c at 1039.322 kb on + strand, within Rv0931c at 1039.322 kb on + strand, within Rv0931c at 1039.322 kb on + strand, within Rv0931c at 1039.322 kb on + strand, within Rv0931c at 1039.323 kb on - strand, within Rv0931c at 1039.323 kb on - strand, within Rv0931c at 1039.323 kb on - strand, within Rv0931c at 1039.323 kb on - strand, within Rv0931c at 1039.326 kb on + strand, within Rv0931c at 1039.326 kb on + strand, within Rv0931c at 1039.326 kb on + strand, within Rv0931c at 1039.326 kb on + strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.327 kb on - strand, within Rv0931c at 1039.337 kb on + strand, within Rv0931c at 1039.337 kb on + strand, within Rv0931c at 1039.376 kb on + strand, within Rv0931c at 1039.376 kb on + strand, within Rv0931c at 1039.376 kb on + strand, within Rv0931c at 1039.376 kb on + strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.377 kb on - strand, within Rv0931c at 1039.382 kb on + strand, within Rv0931c at 1039.382 kb on + strand, within Rv0931c at 1039.382 kb on + strand, within Rv0931c at 1039.383 kb on - strand, within Rv0931c at 1039.383 kb on - strand, within Rv0931c at 1039.457 kb on + strand, within Rv0931c at 1039.457 kb on + strand, within Rv0931c at 1039.595 kb on + strand, within Rv0931c at 1039.595 kb on + strand, within Rv0931c at 1039.596 kb on - strand, within Rv0931c at 1039.596 kb on - strand, within Rv0931c at 1039.596 kb on - strand, within Rv0931c at 1039.673 kb on + strand, within Rv0931c at 1039.673 kb on + strand, within Rv0931c at 1039.674 kb on - strand, within Rv0931c at 1039.767 kb on - strand at 1039.826 kb on + strand at 1039.865 kb on - strand at 1039.892 kb on - strand at 1040.046 kb on + strand at 1040.047 kb on - strand at 1040.064 kb on + strand, within Rv0932c at 1040.085 kb on - strand, within Rv0932c at 1040.105 kb on + strand, within Rv0932c at 1040.105 kb on + strand, within Rv0932c at 1040.105 kb on + strand, within Rv0932c at 1040.106 kb on - strand, within Rv0932c at 1040.150 kb on + strand, within Rv0932c at 1040.151 kb on - strand, within Rv0932c at 1040.318 kb on + strand, within Rv0932c at 1040.318 kb on + strand, within Rv0932c at 1040.319 kb on - strand, within Rv0932c at 1040.319 kb on - strand, within Rv0932c at 1040.319 kb on - strand, within Rv0932c at 1040.451 kb on - strand, within Rv0932c at 1040.497 kb on - strand, within Rv0932c at 1040.502 kb on + strand, within Rv0932c at 1040.634 kb on + strand, within Rv0932c at 1040.634 kb on + strand, within Rv0932c at 1040.635 kb on - strand, within Rv0932c at 1040.639 kb on + strand, within Rv0932c at 1040.639 kb on + strand, within Rv0932c at 1040.640 kb on - strand, within Rv0932c at 1040.640 kb on - strand, within Rv0932c at 1040.852 kb on + strand, within Rv0932c at 1040.852 kb on + strand, within Rv0932c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clarithromycin 0.967 ug/mL remove 1,037,065 - -3.9 1,037,254 + Rv0930 0.28 -3.2 1,037,255 - Rv0930 0.28 -3.0 1,037,266 + Rv0930 0.29 -2.8 1,037,335 + Rv0930 0.36 -2.7 1,037,335 + Rv0930 0.36 -4.0 1,037,336 - Rv0930 0.36 -4.4 1,037,377 - Rv0930 0.41 -3.1 1,037,412 + Rv0930 0.45 -2.3 1,037,427 - Rv0930 0.46 -0.4 1,037,779 + Rv0930 0.84 -2.7 1,037,780 - Rv0930 0.84 -2.5 1,037,966 + -0.1 1,037,966 + +0.2 1,037,966 + +0.5 1,038,092 + +0.1 1,038,092 + -0.3 1,038,093 - +0.2 1,038,219 - Rv0931c 0.15 -0.9 1,038,344 + Rv0931c 0.21 -1.0 1,038,344 + Rv0931c 0.21 +0.4 1,038,344 + Rv0931c 0.21 -0.1 1,038,345 - Rv0931c 0.21 -1.9 1,038,345 - Rv0931c 0.21 -1.4 1,038,345 - Rv0931c 0.21 -0.5 1,038,384 - Rv0931c 0.23 -1.1 1,038,384 - Rv0931c 0.23 -0.1 1,038,467 + Rv0931c 0.27 -0.2 1,038,467 + Rv0931c 0.27 -1.1 1,038,467 + Rv0931c 0.27 -0.2 1,038,468 - Rv0931c 0.27 +0.0 1,038,468 - Rv0931c 0.27 -0.2 1,038,468 - Rv0931c 0.27 -0.5 1,038,468 - Rv0931c 0.27 -0.1 1,038,468 - Rv0931c 0.27 +0.3 1,038,469 + Rv0931c 0.28 -0.3 1,038,510 - Rv0931c 0.30 -0.2 1,038,576 - Rv0931c 0.33 -0.8 1,038,576 - Rv0931c 0.33 -1.4 1,038,576 - Rv0931c 0.33 +0.7 1,038,597 - Rv0931c 0.34 -0.4 1,038,597 - Rv0931c 0.34 -0.7 1,038,710 - Rv0931c 0.40 +0.2 1,039,205 - Rv0931c 0.64 +0.1 1,039,234 + Rv0931c 0.66 +0.2 1,039,235 - Rv0931c 0.66 -0.1 1,039,235 - Rv0931c 0.66 +0.8 1,039,235 - Rv0931c 0.66 -0.4 1,039,322 + Rv0931c 0.70 -0.2 1,039,322 + Rv0931c 0.70 +0.2 1,039,322 + Rv0931c 0.70 -1.9 1,039,322 + Rv0931c 0.70 +0.2 1,039,323 - Rv0931c 0.70 +0.0 1,039,323 - Rv0931c 0.70 -0.2 1,039,323 - Rv0931c 0.70 -0.9 1,039,323 - Rv0931c 0.70 +1.2 1,039,326 + Rv0931c 0.70 -1.2 1,039,326 + Rv0931c 0.70 -0.5 1,039,326 + Rv0931c 0.70 +0.2 1,039,326 + Rv0931c 0.70 +0.1 1,039,327 - Rv0931c 0.71 +0.6 1,039,327 - Rv0931c 0.71 -0.2 1,039,327 - Rv0931c 0.71 -0.3 1,039,327 - Rv0931c 0.71 -0.0 1,039,327 - Rv0931c 0.71 -0.5 1,039,337 + Rv0931c 0.71 -0.7 1,039,337 + Rv0931c 0.71 +0.9 1,039,376 + Rv0931c 0.73 +1.0 1,039,376 + Rv0931c 0.73 -0.9 1,039,376 + Rv0931c 0.73 +0.4 1,039,376 + Rv0931c 0.73 -1.4 1,039,377 - Rv0931c 0.73 -1.7 1,039,377 - Rv0931c 0.73 +0.7 1,039,377 - Rv0931c 0.73 -0.1 1,039,377 - Rv0931c 0.73 -0.2 1,039,377 - Rv0931c 0.73 +0.6 1,039,377 - Rv0931c 0.73 -0.6 1,039,382 + Rv0931c 0.73 +0.4 1,039,382 + Rv0931c 0.73 -0.0 1,039,382 + Rv0931c 0.73 +0.0 1,039,383 - Rv0931c 0.73 -1.2 1,039,383 - Rv0931c 0.73 -1.2 1,039,457 + Rv0931c 0.77 +0.1 1,039,457 + Rv0931c 0.77 -0.1 1,039,595 + Rv0931c 0.84 -0.0 1,039,595 + Rv0931c 0.84 +0.3 1,039,596 - Rv0931c 0.84 -0.1 1,039,596 - Rv0931c 0.84 -0.7 1,039,596 - Rv0931c 0.84 +0.3 1,039,673 + Rv0931c 0.88 +0.2 1,039,673 + Rv0931c 0.88 -0.3 1,039,674 - Rv0931c 0.88 +0.8 1,039,767 - -0.2 1,039,826 + -0.1 1,039,865 - +0.6 1,039,892 - +1.9 1,040,046 + +0.3 1,040,047 - +0.4 1,040,064 + Rv0932c 0.12 +0.3 1,040,085 - Rv0932c 0.13 +0.1 1,040,105 + Rv0932c 0.15 +0.7 1,040,105 + Rv0932c 0.15 +1.0 1,040,105 + Rv0932c 0.15 -0.3 1,040,106 - Rv0932c 0.15 -0.1 1,040,150 + Rv0932c 0.19 +0.1 1,040,151 - Rv0932c 0.19 +0.9 1,040,318 + Rv0932c 0.34 +0.4 1,040,318 + Rv0932c 0.34 +0.1 1,040,319 - Rv0932c 0.34 +0.1 1,040,319 - Rv0932c 0.34 +0.2 1,040,319 - Rv0932c 0.34 -1.7 1,040,451 - Rv0932c 0.46 -0.1 1,040,497 - Rv0932c 0.50 +0.0 1,040,502 + Rv0932c 0.51 -0.5 1,040,634 + Rv0932c 0.63 -0.4 1,040,634 + Rv0932c 0.63 -0.1 1,040,635 - Rv0932c 0.63 -0.3 1,040,639 + Rv0932c 0.63 -0.1 1,040,639 + Rv0932c 0.63 +0.6 1,040,640 - Rv0932c 0.63 -0.3 1,040,640 - Rv0932c 0.63 -0.1 1,040,852 + Rv0932c 0.82 +0.8 1,040,852 + Rv0932c 0.82 +0.7
Or see this region's nucleotide sequence