Experiment: 7H9 with Clarithromycin 0.967 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0322 and Rv0323c overlap by 12 nucleotides Rv0323c and Rv0324 are separated by 100 nucleotides Rv0324 and Rv0325 are separated by 6 nucleotides
Rv0322: Rv0322 - Probable UDP-glucose 6-dehydrogenase UdgA (UDP-GLC dehydrogenase) (UDP-GLCDH) (UDPGDH), at 389,260 to 390,591
Rv0322
Rv0323c: Rv0323c - Conserved hypothetical protein, at 390,580 to 391,251
Rv0323c
Rv0324: Rv0324 - Possible transcriptional regulatory protein (possibly ArsR-family), at 391,352 to 392,032
Rv0324
Rv0325: Rv0325 - Hypothetical protein, at 392,039 to 392,263
Rv0325
Position (kb) 390
391
392 Strain fitness (log2 ratio) -1
0
1 at 389.805 kb on - strand, within Rv0322 at 390.370 kb on - strand, within Rv0322 at 390.380 kb on - strand, within Rv0322 at 390.473 kb on + strand at 390.473 kb on + strand at 390.611 kb on + strand at 390.612 kb on - strand at 390.612 kb on - strand at 390.612 kb on - strand at 390.914 kb on - strand, within Rv0323c at 390.980 kb on - strand, within Rv0323c at 391.303 kb on + strand at 391.584 kb on - strand, within Rv0324 at 391.795 kb on + strand, within Rv0324 at 391.796 kb on - strand, within Rv0324 at 391.877 kb on + strand, within Rv0324 at 391.892 kb on + strand, within Rv0324 at 392.058 kb on + strand at 392.059 kb on - strand at 392.059 kb on - strand at 392.141 kb on + strand, within Rv0325 at 392.141 kb on + strand, within Rv0325 at 392.169 kb on + strand, within Rv0325 at 392.169 kb on + strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.171 kb on + strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Clarithromycin 0.967 ug/mL remove 389,805 - Rv0322 0.41 -0.2 390,370 - Rv0322 0.83 -0.3 390,380 - Rv0322 0.84 -0.2 390,473 + +0.0 390,473 + +1.4 390,611 + -0.8 390,612 - -0.7 390,612 - +0.2 390,612 - +0.2 390,914 - Rv0323c 0.50 +0.1 390,980 - Rv0323c 0.60 +0.5 391,303 + +0.3 391,584 - Rv0324 0.34 -0.1 391,795 + Rv0324 0.65 -0.8 391,796 - Rv0324 0.65 -1.0 391,877 + Rv0324 0.77 -1.0 391,892 + Rv0324 0.79 -0.5 392,058 + +0.4 392,059 - +0.2 392,059 - -0.3 392,141 + Rv0325 0.45 +0.3 392,141 + Rv0325 0.45 -0.1 392,169 + Rv0325 0.58 -0.2 392,169 + Rv0325 0.58 +0.3 392,170 - Rv0325 0.58 +0.1 392,170 - Rv0325 0.58 +1.3 392,170 - Rv0325 0.58 -0.8 392,170 - Rv0325 0.58 +0.7 392,171 + Rv0325 0.59 -0.1 392,172 - Rv0325 0.59 -0.1 392,172 - Rv0325 0.59 -0.4 392,172 - Rv0325 0.59 +0.0 392,172 - Rv0325 0.59 -0.9 392,250 - -0.1
Or see this region's nucleotide sequence