Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3020c

Experiment: 7H9 with Delamanid 0.236 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Delamanid 0.236 ug/mL
3,378,433	+				+0.7
3,378,482	+				+0.9
3,378,486	+				-2.1
3,378,507	-				-0.5
3,378,817	-		Rv3019c	0.36	-0.4
3,378,850	+		Rv3019c	0.48	-0.0
3,378,850	+		Rv3019c	0.48	-0.1
3,378,851	-		Rv3019c	0.48	+1.6
3,378,851	-		Rv3019c	0.48	+1.3
3,378,851	-		Rv3019c	0.48	-0.1
3,378,986	-				-0.6
3,378,986	-				-0.3
3,378,986	-				-0.3
3,378,986	-				-0.2
3,379,037	+				-0.5
3,379,050	-				-0.4
3,379,082	+		Rv3020c	0.16	+0.7
3,379,083	-		Rv3020c	0.16	-0.2
3,379,132	-		Rv3020c	0.33	+0.9
3,379,248	+		Rv3020c	0.72	+1.1
3,379,269	+		Rv3020c	0.79	-0.2
3,379,893	-		Rv3021c	0.48	+0.9