Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IJEDHG_26170 and aroL are separated by 702 nucleotides aroL and IJEDHG_26180 are separated by 306 nucleotides
IJEDHG_26170: IJEDHG_26170 - AroM protein, at 4,511,001 to 4,511,822
_26170
IJEDHG_26175: aroL - shikimate kinase AroL, at 4,512,525 to 4,513,049
aroL
IJEDHG_26180: IJEDHG_26180 - DUF2076 domain-containing protein, at 4,513,356 to 4,514,063
_26180
Position (kb) 4512
4513
4514 Strain fitness (log2 ratio) -1
0
1 at 4511.656 kb on - strand, within IJEDHG_26170 at 4511.656 kb on - strand, within IJEDHG_26170 at 4511.741 kb on + strand at 4511.741 kb on + strand at 4511.741 kb on + strand at 4511.742 kb on - strand at 4511.786 kb on + strand at 4511.786 kb on + strand at 4511.787 kb on - strand at 4511.838 kb on + strand at 4511.839 kb on - strand at 4511.889 kb on + strand at 4512.004 kb on + strand at 4512.004 kb on + strand at 4512.005 kb on - strand at 4512.005 kb on - strand at 4512.005 kb on - strand at 4512.005 kb on - strand at 4512.005 kb on - strand at 4512.029 kb on - strand at 4512.048 kb on - strand at 4512.159 kb on - strand at 4512.269 kb on - strand at 4512.356 kb on + strand at 4512.359 kb on + strand at 4512.359 kb on + strand at 4512.560 kb on + strand at 4512.567 kb on + strand at 4512.568 kb on - strand at 4512.568 kb on - strand at 4512.604 kb on + strand, within aroL at 4512.604 kb on + strand, within aroL at 4512.604 kb on + strand, within aroL at 4512.733 kb on - strand, within aroL at 4512.733 kb on - strand, within aroL at 4512.755 kb on - strand, within aroL at 4512.759 kb on - strand, within aroL at 4512.759 kb on - strand, within aroL at 4512.871 kb on - strand, within aroL at 4513.033 kb on + strand at 4513.049 kb on + strand at 4513.098 kb on - strand at 4513.139 kb on - strand at 4513.139 kb on - strand at 4513.281 kb on - strand at 4513.281 kb on - strand at 4513.281 kb on - strand at 4513.324 kb on + strand at 4513.330 kb on + strand at 4513.330 kb on + strand at 4513.494 kb on + strand, within IJEDHG_26180 at 4513.495 kb on - strand, within IJEDHG_26180 at 4513.495 kb on - strand, within IJEDHG_26180 at 4513.541 kb on + strand, within IJEDHG_26180 at 4513.817 kb on - strand, within IJEDHG_26180 at 4513.916 kb on + strand, within IJEDHG_26180 at 4513.925 kb on + strand, within IJEDHG_26180
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 4,511,656 - IJEDHG_26170 0.80 -0.6 4,511,656 - IJEDHG_26170 0.80 -0.2 4,511,741 + -0.1 4,511,741 + -0.3 4,511,741 + +0.1 4,511,742 - -0.3 4,511,786 + -0.3 4,511,786 + -0.4 4,511,787 - +0.3 4,511,838 + -0.1 4,511,839 - -0.1 4,511,889 + -0.5 4,512,004 + +0.1 4,512,004 + -0.1 4,512,005 - +0.4 4,512,005 - +0.2 4,512,005 - +0.2 4,512,005 - +0.2 4,512,005 - -0.4 4,512,029 - -0.4 4,512,048 - -0.0 4,512,159 - -0.3 4,512,269 - -0.6 4,512,356 + -0.2 4,512,359 + +0.5 4,512,359 + -0.0 4,512,560 + -0.2 4,512,567 + -0.7 4,512,568 - +0.2 4,512,568 - +0.6 4,512,604 + aroL IJEDHG_26175 0.15 -0.8 4,512,604 + aroL IJEDHG_26175 0.15 -0.2 4,512,604 + aroL IJEDHG_26175 0.15 +0.5 4,512,733 - aroL IJEDHG_26175 0.40 -0.4 4,512,733 - aroL IJEDHG_26175 0.40 +0.0 4,512,755 - aroL IJEDHG_26175 0.44 +0.3 4,512,759 - aroL IJEDHG_26175 0.45 -0.2 4,512,759 - aroL IJEDHG_26175 0.45 -0.1 4,512,871 - aroL IJEDHG_26175 0.66 -0.3 4,513,033 + +0.3 4,513,049 + +0.4 4,513,098 - -0.6 4,513,139 - -0.6 4,513,139 - -0.2 4,513,281 - +0.4 4,513,281 - -0.1 4,513,281 - +0.3 4,513,324 + -0.2 4,513,330 + -0.5 4,513,330 + -0.3 4,513,494 + IJEDHG_26180 0.19 +0.2 4,513,495 - IJEDHG_26180 0.20 -0.5 4,513,495 - IJEDHG_26180 0.20 +0.4 4,513,541 + IJEDHG_26180 0.26 -0.3 4,513,817 - IJEDHG_26180 0.65 -0.3 4,513,916 + IJEDHG_26180 0.79 +0.6 4,513,925 + IJEDHG_26180 0.80 +0.6
Or see this region's nucleotide sequence