Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnT and arnD are separated by 5 nucleotides arnD and arnA overlap by 4 nucleotides arnA and arnC overlap by 1 nucleotides arnC and arnB overlap by 11 nucleotides
IJEDHG_02585: arnT - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 354,652 to 356,313
arnT
IJEDHG_02590: arnD - 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase, at 356,319 to 357,212
arnD
IJEDHG_02595: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 357,209 to 359,191
arnA
IJEDHG_02600: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 359,191 to 360,171
arnC
IJEDHG_02605: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 360,161 to 361,312
arnB
Position (kb) 357
358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 357.259 kb on + strand at 357.362 kb on - strand at 357.369 kb on + strand at 357.369 kb on + strand at 357.369 kb on + strand at 357.369 kb on + strand at 357.369 kb on + strand at 357.370 kb on - strand at 357.580 kb on + strand, within arnA at 357.676 kb on + strand, within arnA at 357.886 kb on - strand, within arnA at 357.925 kb on - strand, within arnA at 357.928 kb on + strand, within arnA at 357.999 kb on + strand, within arnA at 358.161 kb on + strand, within arnA at 358.162 kb on - strand, within arnA at 358.162 kb on - strand, within arnA at 358.208 kb on - strand, within arnA at 358.333 kb on + strand, within arnA at 358.336 kb on - strand, within arnA at 358.336 kb on - strand, within arnA at 358.336 kb on - strand, within arnA at 358.336 kb on - strand, within arnA at 358.336 kb on - strand, within arnA at 358.471 kb on + strand, within arnA at 358.537 kb on + strand, within arnA at 358.861 kb on - strand, within arnA at 358.861 kb on - strand, within arnA at 359.102 kb on - strand at 359.245 kb on - strand at 359.245 kb on - strand at 359.276 kb on + strand at 359.276 kb on + strand at 359.276 kb on + strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.280 kb on + strand at 359.280 kb on + strand at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.464 kb on - strand, within arnC at 359.469 kb on + strand, within arnC at 359.469 kb on + strand, within arnC at 359.469 kb on + strand, within arnC at 359.470 kb on - strand, within arnC at 359.470 kb on - strand, within arnC at 359.481 kb on + strand, within arnC at 359.484 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.508 kb on - strand, within arnC at 359.628 kb on + strand, within arnC at 359.628 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.689 kb on - strand, within arnC at 359.689 kb on - strand, within arnC at 359.689 kb on - strand, within arnC at 359.740 kb on + strand, within arnC at 359.761 kb on - strand, within arnC at 359.804 kb on - strand, within arnC at 359.920 kb on - strand, within arnC at 359.920 kb on - strand, within arnC at 359.939 kb on + strand, within arnC at 359.939 kb on + strand, within arnC at 359.940 kb on - strand, within arnC at 360.050 kb on + strand, within arnC at 360.065 kb on - strand, within arnC at 360.082 kb on - strand at 360.095 kb on - strand at 360.133 kb on + strand at 360.134 kb on - strand at 360.150 kb on + strand at 360.153 kb on + strand at 360.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 357,259 + -1.8 357,362 - -0.3 357,369 + -2.2 357,369 + -2.0 357,369 + -1.7 357,369 + -3.0 357,369 + -2.2 357,370 - -2.2 357,580 + arnA IJEDHG_02595 0.19 -2.8 357,676 + arnA IJEDHG_02595 0.24 -0.8 357,886 - arnA IJEDHG_02595 0.34 -3.6 357,925 - arnA IJEDHG_02595 0.36 -1.0 357,928 + arnA IJEDHG_02595 0.36 -3.3 357,999 + arnA IJEDHG_02595 0.40 -1.4 358,161 + arnA IJEDHG_02595 0.48 -3.0 358,162 - arnA IJEDHG_02595 0.48 -1.0 358,162 - arnA IJEDHG_02595 0.48 -0.3 358,208 - arnA IJEDHG_02595 0.50 +0.7 358,333 + arnA IJEDHG_02595 0.57 -2.0 358,336 - arnA IJEDHG_02595 0.57 -2.6 358,336 - arnA IJEDHG_02595 0.57 -1.3 358,336 - arnA IJEDHG_02595 0.57 -1.9 358,336 - arnA IJEDHG_02595 0.57 -1.5 358,336 - arnA IJEDHG_02595 0.57 -1.3 358,471 + arnA IJEDHG_02595 0.64 -2.0 358,537 + arnA IJEDHG_02595 0.67 -2.2 358,861 - arnA IJEDHG_02595 0.83 -2.5 358,861 - arnA IJEDHG_02595 0.83 -3.3 359,102 - -1.9 359,245 - -2.3 359,245 - -1.5 359,276 + -1.9 359,276 + -3.3 359,276 + -0.3 359,277 - -1.7 359,277 - -2.5 359,277 - -1.8 359,277 - -2.5 359,277 - -1.5 359,277 - -2.9 359,277 - -2.3 359,280 + -1.2 359,280 + -2.3 359,292 - arnC IJEDHG_02600 0.10 -2.3 359,292 - arnC IJEDHG_02600 0.10 -2.5 359,292 - arnC IJEDHG_02600 0.10 -1.4 359,292 - arnC IJEDHG_02600 0.10 -1.5 359,464 - arnC IJEDHG_02600 0.28 -1.9 359,469 + arnC IJEDHG_02600 0.28 -0.8 359,469 + arnC IJEDHG_02600 0.28 -1.5 359,469 + arnC IJEDHG_02600 0.28 -0.8 359,470 - arnC IJEDHG_02600 0.28 -2.1 359,470 - arnC IJEDHG_02600 0.28 -1.5 359,481 + arnC IJEDHG_02600 0.30 -2.3 359,484 + arnC IJEDHG_02600 0.30 -0.2 359,507 + arnC IJEDHG_02600 0.32 -0.9 359,507 + arnC IJEDHG_02600 0.32 -3.2 359,507 + arnC IJEDHG_02600 0.32 -2.2 359,508 - arnC IJEDHG_02600 0.32 -1.2 359,628 + arnC IJEDHG_02600 0.45 -1.3 359,628 + arnC IJEDHG_02600 0.45 -1.0 359,688 + arnC IJEDHG_02600 0.51 -0.9 359,688 + arnC IJEDHG_02600 0.51 -1.1 359,688 + arnC IJEDHG_02600 0.51 -2.3 359,689 - arnC IJEDHG_02600 0.51 -1.9 359,689 - arnC IJEDHG_02600 0.51 -3.1 359,689 - arnC IJEDHG_02600 0.51 -2.3 359,740 + arnC IJEDHG_02600 0.56 -0.3 359,761 - arnC IJEDHG_02600 0.58 -1.9 359,804 - arnC IJEDHG_02600 0.62 -1.3 359,920 - arnC IJEDHG_02600 0.74 -1.5 359,920 - arnC IJEDHG_02600 0.74 -0.5 359,939 + arnC IJEDHG_02600 0.76 -2.9 359,939 + arnC IJEDHG_02600 0.76 -0.7 359,940 - arnC IJEDHG_02600 0.76 -0.6 360,050 + arnC IJEDHG_02600 0.88 -0.7 360,065 - arnC IJEDHG_02600 0.89 -1.2 360,082 - -1.8 360,095 - -2.4 360,133 + -1.7 360,134 - -2.0 360,150 + -1.5 360,153 + -2.8 360,153 + -2.5
Or see this region's nucleotide sequence