Strain Fitness in Rahnella sp. WP5 around EX31_RS25730

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04305 and EX31_RS25730 are separated by 220 nucleotidesEX31_RS25730 and EX31_RS04315 are separated by 25 nucleotidesEX31_RS04315 and EX31_RS04320 are separated by 47 nucleotides EX31_RS04305: EX31_RS04305 - relaxase/mobilization nuclease domain-containing protein, at 390,873 to 392,132 _RS04305 EX31_RS25730: EX31_RS25730 - DUF4755 domain-containing protein, at 392,353 to 392,994 _RS25730 EX31_RS04315: EX31_RS04315 - hypothetical protein, at 393,020 to 393,409 _RS04315 EX31_RS04320: EX31_RS04320 - hypothetical protein, at 393,457 to 393,879 _RS04320 Position (kb) 392 393Strain fitness (log2 ratio) -2 -1 0 1at 391.449 kb on - strand, within EX31_RS04305at 391.456 kb on + strand, within EX31_RS04305at 391.478 kb on - strand, within EX31_RS04305at 391.484 kb on + strand, within EX31_RS04305at 391.574 kb on + strand, within EX31_RS04305at 391.609 kb on - strand, within EX31_RS04305at 391.642 kb on - strand, within EX31_RS04305at 391.642 kb on - strand, within EX31_RS04305at 391.677 kb on - strand, within EX31_RS04305at 391.790 kb on - strand, within EX31_RS04305at 391.817 kb on + strand, within EX31_RS04305at 391.817 kb on + strand, within EX31_RS04305at 391.817 kb on + strand, within EX31_RS04305at 391.817 kb on + strand, within EX31_RS04305at 391.817 kb on + strand, within EX31_RS04305at 391.817 kb on + strand, within EX31_RS04305at 391.818 kb on - strand, within EX31_RS04305at 391.818 kb on - strand, within EX31_RS04305at 391.818 kb on - strand, within EX31_RS04305at 391.818 kb on - strand, within EX31_RS04305at 391.818 kb on - strand, within EX31_RS04305at 391.818 kb on - strand, within EX31_RS04305at 391.831 kb on + strand, within EX31_RS04305at 391.831 kb on + strand, within EX31_RS04305at 391.832 kb on - strand, within EX31_RS04305at 391.832 kb on - strand, within EX31_RS04305at 391.832 kb on - strand, within EX31_RS04305at 391.841 kb on + strand, within EX31_RS04305at 391.841 kb on + strand, within EX31_RS04305at 391.842 kb on - strand, within EX31_RS04305at 391.856 kb on + strand, within EX31_RS04305at 391.856 kb on + strand, within EX31_RS04305at 391.856 kb on + strand, within EX31_RS04305at 391.856 kb on + strand, within EX31_RS04305at 391.856 kb on + strand, within EX31_RS04305at 391.856 kb on + strand, within EX31_RS04305at 391.856 kb on + strand, within EX31_RS04305at 391.856 kb on + strand, within EX31_RS04305at 391.856 kb on + strand, within EX31_RS04305at 391.857 kb on - strand, within EX31_RS04305at 391.865 kb on + strand, within EX31_RS04305at 391.866 kb on - strand, within EX31_RS04305at 391.891 kb on + strand, within EX31_RS04305at 391.891 kb on + strand, within EX31_RS04305at 391.891 kb on + strand, within EX31_RS04305at 391.892 kb on - strand, within EX31_RS04305at 391.895 kb on + strand, within EX31_RS04305at 391.896 kb on - strand, within EX31_RS04305at 391.896 kb on - strand, within EX31_RS04305at 391.896 kb on - strand, within EX31_RS04305at 391.904 kb on + strand, within EX31_RS04305at 391.904 kb on + strand, within EX31_RS04305at 391.904 kb on + strand, within EX31_RS04305at 391.918 kb on + strand, within EX31_RS04305at 391.918 kb on + strand, within EX31_RS04305at 391.918 kb on + strand, within EX31_RS04305at 391.919 kb on - strand, within EX31_RS04305at 391.919 kb on - strand, within EX31_RS04305at 391.919 kb on - strand, within EX31_RS04305at 391.919 kb on - strand, within EX31_RS04305at 391.919 kb on - strand, within EX31_RS04305at 391.919 kb on - strand, within EX31_RS04305at 391.922 kb on + strand, within EX31_RS04305at 391.922 kb on + strand, within EX31_RS04305at 391.923 kb on - strand, within EX31_RS04305at 391.923 kb on - strand, within EX31_RS04305at 391.939 kb on + strand, within EX31_RS04305at 392.036 kb on - strandat 392.055 kb on - strandat 392.080 kb on + strandat 392.080 kb on + strandat 392.080 kb on + strandat 392.081 kb on - strandat 392.081 kb on - strandat 392.092 kb on + strandat 392.092 kb on + strandat 392.093 kb on - strandat 392.093 kb on - strandat 392.093 kb on - strandat 392.093 kb on - strandat 392.093 kb on - strandat 392.118 kb on - strandat 392.150 kb on - strandat 392.256 kb on + strandat 392.257 kb on - strandat 392.291 kb on + strandat 392.291 kb on + strandat 392.292 kb on - strandat 392.292 kb on - strandat 392.292 kb on - strandat 392.324 kb on - strandat 392.324 kb on - strandat 392.345 kb on + strandat 392.435 kb on + strand, within EX31_RS25730at 392.435 kb on + strand, within EX31_RS25730at 392.436 kb on - strand, within EX31_RS25730at 392.441 kb on + strand, within EX31_RS25730at 392.441 kb on + strand, within EX31_RS25730at 392.441 kb on + strand, within EX31_RS25730at 392.441 kb on + strand, within EX31_RS25730at 392.441 kb on + strand, within EX31_RS25730at 392.441 kb on + strand, within EX31_RS25730at 392.442 kb on - strand, within EX31_RS25730at 392.453 kb on + strand, within EX31_RS25730at 392.456 kb on + strand, within EX31_RS25730at 392.456 kb on + strand, within EX31_RS25730at 392.457 kb on - strand, within EX31_RS25730at 392.457 kb on - strand, within EX31_RS25730at 392.457 kb on - strand, within EX31_RS25730at 392.459 kb on + strand, within EX31_RS25730at 392.460 kb on - strand, within EX31_RS25730at 392.617 kb on + strand, within EX31_RS25730at 392.618 kb on - strand, within EX31_RS25730at 392.702 kb on - strand, within EX31_RS25730at 392.738 kb on + strand, within EX31_RS25730at 393.035 kb on - strandat 393.154 kb on + strand, within EX31_RS04315at 393.202 kb on + strand, within EX31_RS04315at 393.202 kb on + strand, within EX31_RS04315at 393.224 kb on + strand, within EX31_RS04315at 393.235 kb on + strand, within EX31_RS04315at 393.274 kb on + strand, within EX31_RS04315at 393.284 kb on - strand, within EX31_RS04315at 393.351 kb on + strand, within EX31_RS04315at 393.403 kb on + strandat 393.404 kb on - strandat 393.483 kb on + strandat 393.484 kb on - strandat 393.535 kb on + strand, within EX31_RS04320at 393.598 kb on - strand, within EX31_RS04320at 393.604 kb on + strand, within EX31_RS04320at 393.827 kb on - strand, within EX31_RS04320at 393.880 kb on - strandat 393.924 kb on - strandat 393.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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391,449 - EX31_RS04305 0.46 -0.4
391,456 + EX31_RS04305 0.46 +0.3
391,478 - EX31_RS04305 0.48 -0.1
391,484 + EX31_RS04305 0.48 +0.5
391,574 + EX31_RS04305 0.56 +0.6
391,609 - EX31_RS04305 0.58 -1.2
391,642 - EX31_RS04305 0.61 +0.1
391,642 - EX31_RS04305 0.61 -0.4
391,677 - EX31_RS04305 0.64 +0.5
391,790 - EX31_RS04305 0.73 -0.5
391,817 + EX31_RS04305 0.75 +1.6
391,817 + EX31_RS04305 0.75 +0.0
391,817 + EX31_RS04305 0.75 +0.5
391,817 + EX31_RS04305 0.75 -1.1
391,817 + EX31_RS04305 0.75 +0.3
391,817 + EX31_RS04305 0.75 +0.5
391,818 - EX31_RS04305 0.75 +0.1
391,818 - EX31_RS04305 0.75 -0.6
391,818 - EX31_RS04305 0.75 -1.1
391,818 - EX31_RS04305 0.75 +0.3
391,818 - EX31_RS04305 0.75 +0.5
391,818 - EX31_RS04305 0.75 +0.6
391,831 + EX31_RS04305 0.76 +0.5
391,831 + EX31_RS04305 0.76 -0.1
391,832 - EX31_RS04305 0.76 +0.5
391,832 - EX31_RS04305 0.76 +0.4
391,832 - EX31_RS04305 0.76 -0.7
391,841 + EX31_RS04305 0.77 -0.1
391,841 + EX31_RS04305 0.77 -0.5
391,842 - EX31_RS04305 0.77 +0.1
391,856 + EX31_RS04305 0.78 +1.2
391,856 + EX31_RS04305 0.78 +0.1
391,856 + EX31_RS04305 0.78 -0.2
391,856 + EX31_RS04305 0.78 +0.5
391,856 + EX31_RS04305 0.78 -0.4
391,856 + EX31_RS04305 0.78 -0.4
391,856 + EX31_RS04305 0.78 +0.9
391,856 + EX31_RS04305 0.78 +0.4
391,856 + EX31_RS04305 0.78 +0.7
391,857 - EX31_RS04305 0.78 -0.1
391,865 + EX31_RS04305 0.79 +0.4
391,866 - EX31_RS04305 0.79 +0.2
391,891 + EX31_RS04305 0.81 -0.6
391,891 + EX31_RS04305 0.81 +0.4
391,891 + EX31_RS04305 0.81 +0.6
391,892 - EX31_RS04305 0.81 +0.4
391,895 + EX31_RS04305 0.81 -0.7
391,896 - EX31_RS04305 0.81 +0.7
391,896 - EX31_RS04305 0.81 +0.3
391,896 - EX31_RS04305 0.81 +0.1
391,904 + EX31_RS04305 0.82 -0.1
391,904 + EX31_RS04305 0.82 -1.4
391,904 + EX31_RS04305 0.82 -1.4
391,918 + EX31_RS04305 0.83 +0.1
391,918 + EX31_RS04305 0.83 +0.4
391,918 + EX31_RS04305 0.83 -0.2
391,919 - EX31_RS04305 0.83 +0.5
391,919 - EX31_RS04305 0.83 -0.0
391,919 - EX31_RS04305 0.83 +0.6
391,919 - EX31_RS04305 0.83 +0.4
391,919 - EX31_RS04305 0.83 +0.5
391,919 - EX31_RS04305 0.83 +0.2
391,922 + EX31_RS04305 0.83 -0.1
391,922 + EX31_RS04305 0.83 +0.7
391,923 - EX31_RS04305 0.83 +0.2
391,923 - EX31_RS04305 0.83 -0.0
391,939 + EX31_RS04305 0.85 +0.4
392,036 - +0.7
392,055 - -0.4
392,080 + +1.1
392,080 + -1.5
392,080 + -0.9
392,081 - +0.1
392,081 - +0.9
392,092 + +0.9
392,092 + +1.4
392,093 - +0.8
392,093 - -0.1
392,093 - -0.5
392,093 - -0.1
392,093 - -0.3
392,118 - -0.1
392,150 - +0.3
392,256 + -0.9
392,257 - +0.3
392,291 + +1.2
392,291 + -1.5
392,292 - +0.0
392,292 - -0.2
392,292 - -0.2
392,324 - +0.4
392,324 - +0.2
392,345 + +0.6
392,435 + EX31_RS25730 0.13 -0.3
392,435 + EX31_RS25730 0.13 -0.5
392,436 - EX31_RS25730 0.13 +0.3
392,441 + EX31_RS25730 0.14 +0.9
392,441 + EX31_RS25730 0.14 +0.5
392,441 + EX31_RS25730 0.14 -1.8
392,441 + EX31_RS25730 0.14 -0.4
392,441 + EX31_RS25730 0.14 -0.6
392,441 + EX31_RS25730 0.14 -0.1
392,442 - EX31_RS25730 0.14 -0.1
392,453 + EX31_RS25730 0.16 +0.2
392,456 + EX31_RS25730 0.16 -1.4
392,456 + EX31_RS25730 0.16 -0.0
392,457 - EX31_RS25730 0.16 +0.3
392,457 - EX31_RS25730 0.16 -0.0
392,457 - EX31_RS25730 0.16 -0.1
392,459 + EX31_RS25730 0.17 -0.5
392,460 - EX31_RS25730 0.17 -0.3
392,617 + EX31_RS25730 0.41 -0.0
392,618 - EX31_RS25730 0.41 -0.6
392,702 - EX31_RS25730 0.54 -0.5
392,738 + EX31_RS25730 0.60 -0.7
393,035 - -0.1
393,154 + EX31_RS04315 0.34 -0.2
393,202 + EX31_RS04315 0.47 -0.4
393,202 + EX31_RS04315 0.47 -0.6
393,224 + EX31_RS04315 0.52 +0.4
393,235 + EX31_RS04315 0.55 +0.4
393,274 + EX31_RS04315 0.65 +0.6
393,284 - EX31_RS04315 0.68 +0.6
393,351 + EX31_RS04315 0.85 -1.9
393,403 + -0.4
393,404 - +0.2
393,483 + -0.7
393,484 - +0.5
393,535 + EX31_RS04320 0.18 +0.8
393,598 - EX31_RS04320 0.33 +0.3
393,604 + EX31_RS04320 0.35 -1.9
393,827 - EX31_RS04320 0.87 -0.4
393,880 - -0.9
393,924 - +0.5
393,933 - +0.8

Or see this region's nucleotide sequence