Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24810 and EX31_RS24815 are separated by 342 nucleotides EX31_RS24815 and EX31_RS24820 overlap by 4 nucleotides
EX31_RS24810: EX31_RS24810 - zinc-binding dehydrogenase, at 734,362 to 734,987
_RS24810
EX31_RS24815: EX31_RS24815 - extensin family protein, at 735,330 to 736,028
_RS24815
EX31_RS24820: EX31_RS24820 - amidohydrolase, at 736,025 to 737,203
_RS24820
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.382 kb on + strand at 734.383 kb on - strand at 734.467 kb on + strand, within EX31_RS24810 at 734.467 kb on + strand, within EX31_RS24810 at 734.467 kb on + strand, within EX31_RS24810 at 734.467 kb on + strand, within EX31_RS24810 at 734.467 kb on + strand, within EX31_RS24810 at 734.467 kb on + strand, within EX31_RS24810 at 734.467 kb on + strand, within EX31_RS24810 at 734.468 kb on - strand, within EX31_RS24810 at 734.468 kb on - strand, within EX31_RS24810 at 734.468 kb on - strand, within EX31_RS24810 at 734.468 kb on - strand, within EX31_RS24810 at 734.475 kb on - strand, within EX31_RS24810 at 734.555 kb on + strand, within EX31_RS24810 at 734.556 kb on - strand, within EX31_RS24810 at 734.606 kb on + strand, within EX31_RS24810 at 734.609 kb on + strand, within EX31_RS24810 at 734.609 kb on + strand, within EX31_RS24810 at 734.699 kb on + strand, within EX31_RS24810 at 734.735 kb on + strand, within EX31_RS24810 at 734.736 kb on - strand, within EX31_RS24810 at 734.777 kb on + strand, within EX31_RS24810 at 734.777 kb on + strand, within EX31_RS24810 at 734.778 kb on - strand, within EX31_RS24810 at 734.873 kb on + strand, within EX31_RS24810 at 734.874 kb on - strand, within EX31_RS24810 at 734.951 kb on + strand at 734.981 kb on + strand at 734.981 kb on + strand at 734.981 kb on + strand at 734.982 kb on - strand at 734.982 kb on - strand at 734.982 kb on - strand at 734.982 kb on - strand at 735.016 kb on + strand at 735.045 kb on + strand at 735.045 kb on + strand at 735.045 kb on + strand at 735.045 kb on + strand at 735.045 kb on + strand at 735.046 kb on - strand at 735.046 kb on - strand at 735.063 kb on + strand at 735.112 kb on + strand at 735.112 kb on + strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.119 kb on + strand at 735.120 kb on - strand at 735.178 kb on - strand at 735.193 kb on + strand at 735.197 kb on + strand at 735.198 kb on - strand at 735.198 kb on - strand at 735.208 kb on + strand at 735.208 kb on + strand at 735.209 kb on - strand at 735.209 kb on - strand at 735.212 kb on + strand at 735.212 kb on + strand at 735.213 kb on - strand at 735.213 kb on - strand at 735.213 kb on - strand at 735.213 kb on - strand at 735.219 kb on - strand at 735.233 kb on - strand at 735.253 kb on + strand at 735.253 kb on + strand at 735.253 kb on + strand at 735.265 kb on - strand at 735.265 kb on - strand at 735.296 kb on + strand at 735.296 kb on + strand at 735.296 kb on + strand at 735.296 kb on + strand at 735.297 kb on - strand at 735.297 kb on - strand at 735.297 kb on - strand at 735.309 kb on - strand at 735.309 kb on - strand at 735.318 kb on + strand at 735.329 kb on + strand at 735.414 kb on + strand, within EX31_RS24815 at 735.415 kb on - strand, within EX31_RS24815 at 735.416 kb on + strand, within EX31_RS24815 at 735.437 kb on + strand, within EX31_RS24815 at 735.437 kb on + strand, within EX31_RS24815 at 735.437 kb on + strand, within EX31_RS24815 at 735.438 kb on - strand, within EX31_RS24815 at 735.438 kb on - strand, within EX31_RS24815 at 735.438 kb on - strand, within EX31_RS24815 at 735.441 kb on - strand, within EX31_RS24815 at 735.567 kb on - strand, within EX31_RS24815 at 735.639 kb on + strand, within EX31_RS24815 at 735.640 kb on - strand, within EX31_RS24815 at 735.737 kb on + strand, within EX31_RS24815 at 735.756 kb on + strand, within EX31_RS24815 at 735.756 kb on + strand, within EX31_RS24815 at 735.756 kb on + strand, within EX31_RS24815 at 735.757 kb on - strand, within EX31_RS24815 at 735.774 kb on + strand, within EX31_RS24815 at 735.774 kb on + strand, within EX31_RS24815 at 735.774 kb on + strand, within EX31_RS24815 at 735.775 kb on - strand, within EX31_RS24815 at 735.775 kb on - strand, within EX31_RS24815 at 735.776 kb on + strand, within EX31_RS24815 at 735.776 kb on + strand, within EX31_RS24815 at 735.906 kb on + strand, within EX31_RS24815 at 735.906 kb on + strand, within EX31_RS24815 at 735.907 kb on - strand, within EX31_RS24815 at 735.907 kb on - strand, within EX31_RS24815 at 735.907 kb on - strand, within EX31_RS24815 at 735.907 kb on - strand, within EX31_RS24815 at 735.920 kb on - strand, within EX31_RS24815 at 735.940 kb on - strand, within EX31_RS24815 at 735.967 kb on - strand at 736.085 kb on - strand at 736.094 kb on - strand at 736.176 kb on + strand, within EX31_RS24820 at 736.311 kb on + strand, within EX31_RS24820 at 736.311 kb on + strand, within EX31_RS24820 at 736.312 kb on - strand, within EX31_RS24820 at 736.312 kb on - strand, within EX31_RS24820 at 736.369 kb on + strand, within EX31_RS24820 at 736.369 kb on + strand, within EX31_RS24820 at 736.469 kb on + strand, within EX31_RS24820 at 736.469 kb on + strand, within EX31_RS24820 at 736.469 kb on + strand, within EX31_RS24820 at 736.470 kb on - strand, within EX31_RS24820 at 736.502 kb on - strand, within EX31_RS24820 at 736.523 kb on - strand, within EX31_RS24820 at 736.564 kb on + strand, within EX31_RS24820 at 736.564 kb on + strand, within EX31_RS24820 at 736.564 kb on + strand, within EX31_RS24820 at 736.565 kb on - strand, within EX31_RS24820 at 736.571 kb on + strand, within EX31_RS24820 at 736.572 kb on - strand, within EX31_RS24820 at 736.579 kb on + strand, within EX31_RS24820 at 736.579 kb on + strand, within EX31_RS24820 at 736.615 kb on + strand, within EX31_RS24820 at 736.696 kb on + strand, within EX31_RS24820 at 736.697 kb on - strand, within EX31_RS24820 at 736.697 kb on - strand, within EX31_RS24820 at 736.771 kb on + strand, within EX31_RS24820 at 736.772 kb on - strand, within EX31_RS24820 at 736.801 kb on + strand, within EX31_RS24820 at 736.802 kb on - strand, within EX31_RS24820 at 736.870 kb on + strand, within EX31_RS24820 at 736.921 kb on - strand, within EX31_RS24820 at 736.960 kb on + strand, within EX31_RS24820 at 736.961 kb on - strand, within EX31_RS24820 at 736.961 kb on - strand, within EX31_RS24820
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 734,382 + +0.8 734,383 - -0.4 734,467 + EX31_RS24810 0.17 -0.9 734,467 + EX31_RS24810 0.17 -0.4 734,467 + EX31_RS24810 0.17 -0.5 734,467 + EX31_RS24810 0.17 -0.4 734,467 + EX31_RS24810 0.17 +0.4 734,467 + EX31_RS24810 0.17 -0.9 734,467 + EX31_RS24810 0.17 +0.5 734,468 - EX31_RS24810 0.17 +1.9 734,468 - EX31_RS24810 0.17 +1.8 734,468 - EX31_RS24810 0.17 -1.0 734,468 - EX31_RS24810 0.17 -1.2 734,475 - EX31_RS24810 0.18 -0.7 734,555 + EX31_RS24810 0.31 -0.2 734,556 - EX31_RS24810 0.31 +0.4 734,606 + EX31_RS24810 0.39 +0.4 734,609 + EX31_RS24810 0.39 +1.4 734,609 + EX31_RS24810 0.39 +0.5 734,699 + EX31_RS24810 0.54 -0.8 734,735 + EX31_RS24810 0.60 +0.2 734,736 - EX31_RS24810 0.60 -0.6 734,777 + EX31_RS24810 0.66 +0.3 734,777 + EX31_RS24810 0.66 +0.1 734,778 - EX31_RS24810 0.66 -1.2 734,873 + EX31_RS24810 0.82 -1.3 734,874 - EX31_RS24810 0.82 +0.5 734,951 + +0.6 734,981 + -1.0 734,981 + +0.4 734,981 + -0.9 734,982 - -1.1 734,982 - -0.3 734,982 - +0.6 734,982 - +0.1 735,016 + +0.4 735,045 + -0.7 735,045 + +0.0 735,045 + -0.1 735,045 + -0.6 735,045 + +0.9 735,046 - -1.7 735,046 - +0.3 735,063 + -0.9 735,112 + +0.6 735,112 + -0.5 735,113 - -0.6 735,113 - +0.2 735,113 - -0.1 735,113 - -0.4 735,113 - +0.7 735,113 - +0.9 735,119 + -0.7 735,120 - -0.4 735,178 - +1.8 735,193 + +1.0 735,197 + -0.2 735,198 - -0.6 735,198 - +1.9 735,208 + +0.4 735,208 + +1.6 735,209 - +0.7 735,209 - +0.0 735,212 + +1.4 735,212 + -0.7 735,213 - +0.4 735,213 - -0.1 735,213 - -0.5 735,213 - +1.3 735,219 - -0.3 735,233 - -0.5 735,253 + +0.4 735,253 + -0.1 735,253 + -0.2 735,265 - -0.1 735,265 - -1.0 735,296 + +2.2 735,296 + +1.1 735,296 + -0.2 735,296 + +0.6 735,297 - +0.8 735,297 - -0.1 735,297 - +0.0 735,309 - +1.0 735,309 - -0.4 735,318 + +0.1 735,329 + -0.1 735,414 + EX31_RS24815 0.12 -1.5 735,415 - EX31_RS24815 0.12 -0.2 735,416 + EX31_RS24815 0.12 +0.4 735,437 + EX31_RS24815 0.15 +0.4 735,437 + EX31_RS24815 0.15 -1.2 735,437 + EX31_RS24815 0.15 +0.5 735,438 - EX31_RS24815 0.15 +0.3 735,438 - EX31_RS24815 0.15 +0.2 735,438 - EX31_RS24815 0.15 -1.1 735,441 - EX31_RS24815 0.16 +1.8 735,567 - EX31_RS24815 0.34 +0.4 735,639 + EX31_RS24815 0.44 +0.1 735,640 - EX31_RS24815 0.44 -0.4 735,737 + EX31_RS24815 0.58 -0.7 735,756 + EX31_RS24815 0.61 +0.3 735,756 + EX31_RS24815 0.61 +1.3 735,756 + EX31_RS24815 0.61 -0.4 735,757 - EX31_RS24815 0.61 +0.4 735,774 + EX31_RS24815 0.64 -1.2 735,774 + EX31_RS24815 0.64 -0.7 735,774 + EX31_RS24815 0.64 +0.1 735,775 - EX31_RS24815 0.64 -0.3 735,775 - EX31_RS24815 0.64 -0.2 735,776 + EX31_RS24815 0.64 +0.9 735,776 + EX31_RS24815 0.64 +0.3 735,906 + EX31_RS24815 0.82 +0.5 735,906 + EX31_RS24815 0.82 +1.0 735,907 - EX31_RS24815 0.83 -0.5 735,907 - EX31_RS24815 0.83 +0.0 735,907 - EX31_RS24815 0.83 +0.5 735,907 - EX31_RS24815 0.83 +0.5 735,920 - EX31_RS24815 0.84 +0.9 735,940 - EX31_RS24815 0.87 +1.6 735,967 - -3.0 736,085 - -0.8 736,094 - -0.7 736,176 + EX31_RS24820 0.13 -0.5 736,311 + EX31_RS24820 0.24 -0.6 736,311 + EX31_RS24820 0.24 -0.3 736,312 - EX31_RS24820 0.24 +1.1 736,312 - EX31_RS24820 0.24 -0.2 736,369 + EX31_RS24820 0.29 -0.7 736,369 + EX31_RS24820 0.29 +0.3 736,469 + EX31_RS24820 0.38 -1.6 736,469 + EX31_RS24820 0.38 +0.0 736,469 + EX31_RS24820 0.38 +0.0 736,470 - EX31_RS24820 0.38 -0.5 736,502 - EX31_RS24820 0.40 +0.3 736,523 - EX31_RS24820 0.42 -0.4 736,564 + EX31_RS24820 0.46 +0.3 736,564 + EX31_RS24820 0.46 -0.8 736,564 + EX31_RS24820 0.46 +1.0 736,565 - EX31_RS24820 0.46 +0.5 736,571 + EX31_RS24820 0.46 -1.7 736,572 - EX31_RS24820 0.46 +0.2 736,579 + EX31_RS24820 0.47 -1.4 736,579 + EX31_RS24820 0.47 +1.2 736,615 + EX31_RS24820 0.50 -0.6 736,696 + EX31_RS24820 0.57 +0.4 736,697 - EX31_RS24820 0.57 +1.0 736,697 - EX31_RS24820 0.57 +0.1 736,771 + EX31_RS24820 0.63 -0.2 736,772 - EX31_RS24820 0.63 +0.5 736,801 + EX31_RS24820 0.66 -0.1 736,802 - EX31_RS24820 0.66 +0.1 736,870 + EX31_RS24820 0.72 -1.2 736,921 - EX31_RS24820 0.76 +1.0 736,960 + EX31_RS24820 0.79 -2.0 736,961 - EX31_RS24820 0.79 -0.7 736,961 - EX31_RS24820 0.79 +0.4
Or see this region's nucleotide sequence