Strain Fitness in Rahnella sp. WP5 around EX31_RS10675

Experiment: NL-CCM; vial

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS10670 and EX31_RS10675 are separated by 20 nucleotidesEX31_RS10675 and EX31_RS10680 are separated by 95 nucleotidesEX31_RS10680 and EX31_RS10685 overlap by 4 nucleotides EX31_RS10670: EX31_RS10670 - murein DD-endopeptidase MepM, at 51,515 to 52,849 _RS10670 EX31_RS10675: EX31_RS10675 - zinc ABC transporter substrate-binding protein ZnuA, at 52,870 to 53,802 _RS10675 EX31_RS10680: EX31_RS10680 - zinc ABC transporter ATP-binding protein ZnuC, at 53,898 to 54,656 _RS10680 EX31_RS10685: EX31_RS10685 - zinc ABC transporter permease subunit ZnuB, at 54,653 to 55,438 _RS10685 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.947 kb on - strand, within EX31_RS10670at 52.021 kb on - strand, within EX31_RS10670at 52.021 kb on - strand, within EX31_RS10670at 52.028 kb on - strand, within EX31_RS10670at 52.050 kb on + strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.053 kb on + strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.076 kb on - strand, within EX31_RS10670at 52.076 kb on - strand, within EX31_RS10670at 52.076 kb on - strand, within EX31_RS10670at 52.196 kb on - strand, within EX31_RS10670at 52.349 kb on - strand, within EX31_RS10670at 52.349 kb on - strand, within EX31_RS10670at 52.351 kb on - strand, within EX31_RS10670at 52.351 kb on - strand, within EX31_RS10670at 52.351 kb on - strand, within EX31_RS10670at 52.388 kb on + strand, within EX31_RS10670at 52.389 kb on - strand, within EX31_RS10670at 52.406 kb on - strand, within EX31_RS10670at 52.442 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.446 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.487 kb on - strand, within EX31_RS10670at 52.523 kb on - strand, within EX31_RS10670at 52.542 kb on + strand, within EX31_RS10670at 52.542 kb on + strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.543 kb on - strand, within EX31_RS10670at 52.574 kb on - strand, within EX31_RS10670at 52.728 kb on + strandat 52.729 kb on - strandat 52.729 kb on - strandat 52.729 kb on - strandat 52.729 kb on - strandat 52.772 kb on - strandat 52.772 kb on - strandat 52.787 kb on - strandat 52.787 kb on - strandat 52.787 kb on - strandat 52.787 kb on - strandat 52.814 kb on - strandat 52.816 kb on - strandat 52.829 kb on - strandat 52.872 kb on - strandat 52.872 kb on - strandat 52.872 kb on - strandat 52.922 kb on + strandat 52.922 kb on + strandat 52.922 kb on + strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 52.923 kb on - strandat 53.005 kb on + strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.084 kb on - strand, within EX31_RS10675at 53.162 kb on + strand, within EX31_RS10675at 53.169 kb on - strand, within EX31_RS10675at 53.169 kb on - strand, within EX31_RS10675at 53.169 kb on - strand, within EX31_RS10675at 53.169 kb on - strand, within EX31_RS10675at 53.190 kb on - strand, within EX31_RS10675at 53.218 kb on - strand, within EX31_RS10675at 53.218 kb on - strand, within EX31_RS10675at 53.218 kb on - strand, within EX31_RS10675at 53.218 kb on - strand, within EX31_RS10675at 53.221 kb on - strand, within EX31_RS10675at 53.221 kb on - strand, within EX31_RS10675at 53.279 kb on - strand, within EX31_RS10675at 53.279 kb on - strand, within EX31_RS10675at 53.309 kb on - strand, within EX31_RS10675at 53.331 kb on + strand, within EX31_RS10675at 53.331 kb on + strand, within EX31_RS10675at 53.332 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.374 kb on - strand, within EX31_RS10675at 53.378 kb on + strand, within EX31_RS10675at 53.379 kb on - strand, within EX31_RS10675at 53.379 kb on - strand, within EX31_RS10675at 53.454 kb on + strand, within EX31_RS10675at 53.581 kb on - strand, within EX31_RS10675at 53.704 kb on + strand, within EX31_RS10675at 53.756 kb on - strandat 53.756 kb on - strandat 53.842 kb on - strandat 53.864 kb on - strandat 53.866 kb on - strandat 53.892 kb on + strandat 53.892 kb on + strandat 53.892 kb on + strandat 53.908 kb on + strandat 53.908 kb on + strandat 53.908 kb on + strandat 53.908 kb on + strandat 53.908 kb on + strandat 53.908 kb on + strandat 53.908 kb on + strandat 53.908 kb on + strandat 53.909 kb on - strandat 53.912 kb on + strandat 53.913 kb on - strandat 54.034 kb on + strand, within EX31_RS10680at 54.034 kb on + strand, within EX31_RS10680at 54.097 kb on + strand, within EX31_RS10680at 54.097 kb on + strand, within EX31_RS10680at 54.097 kb on + strand, within EX31_RS10680at 54.098 kb on - strand, within EX31_RS10680at 54.101 kb on + strand, within EX31_RS10680at 54.102 kb on - strand, within EX31_RS10680at 54.108 kb on + strand, within EX31_RS10680at 54.221 kb on - strand, within EX31_RS10680at 54.319 kb on + strand, within EX31_RS10680at 54.319 kb on + strand, within EX31_RS10680at 54.319 kb on + strand, within EX31_RS10680at 54.319 kb on + strand, within EX31_RS10680at 54.319 kb on + strand, within EX31_RS10680at 54.375 kb on + strand, within EX31_RS10680at 54.375 kb on + strand, within EX31_RS10680at 54.375 kb on + strand, within EX31_RS10680at 54.690 kb on + strandat 54.690 kb on + strandat 54.690 kb on + strandat 54.691 kb on - strandat 54.691 kb on - strandat 54.691 kb on - strandat 54.691 kb on - strandat 54.749 kb on + strand, within EX31_RS10685at 54.790 kb on - strand, within EX31_RS10685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
remove
51,947 - EX31_RS10670 0.32 -1.1
52,021 - EX31_RS10670 0.38 +0.1
52,021 - EX31_RS10670 0.38 -0.7
52,028 - EX31_RS10670 0.38 -1.5
52,050 + EX31_RS10670 0.40 +0.2
52,051 - EX31_RS10670 0.40 -0.2
52,051 - EX31_RS10670 0.40 -0.1
52,051 - EX31_RS10670 0.40 +0.8
52,051 - EX31_RS10670 0.40 +0.1
52,053 + EX31_RS10670 0.40 -0.5
52,054 - EX31_RS10670 0.40 +0.1
52,054 - EX31_RS10670 0.40 +0.5
52,054 - EX31_RS10670 0.40 +0.4
52,054 - EX31_RS10670 0.40 +0.9
52,076 - EX31_RS10670 0.42 -0.3
52,076 - EX31_RS10670 0.42 +0.4
52,076 - EX31_RS10670 0.42 -0.4
52,196 - EX31_RS10670 0.51 -0.4
52,349 - EX31_RS10670 0.62 -1.1
52,349 - EX31_RS10670 0.62 +0.3
52,351 - EX31_RS10670 0.63 +0.8
52,351 - EX31_RS10670 0.63 +0.4
52,351 - EX31_RS10670 0.63 +0.3
52,388 + EX31_RS10670 0.65 +1.4
52,389 - EX31_RS10670 0.65 -1.8
52,406 - EX31_RS10670 0.67 +0.1
52,442 - EX31_RS10670 0.69 +0.3
52,446 - EX31_RS10670 0.70 -0.1
52,446 - EX31_RS10670 0.70 +0.3
52,446 - EX31_RS10670 0.70 +0.3
52,446 - EX31_RS10670 0.70 -0.1
52,446 - EX31_RS10670 0.70 +0.4
52,487 - EX31_RS10670 0.73 -0.6
52,487 - EX31_RS10670 0.73 +1.2
52,487 - EX31_RS10670 0.73 -0.2
52,487 - EX31_RS10670 0.73 +0.9
52,487 - EX31_RS10670 0.73 -0.8
52,487 - EX31_RS10670 0.73 +0.0
52,487 - EX31_RS10670 0.73 -0.3
52,523 - EX31_RS10670 0.76 +0.1
52,542 + EX31_RS10670 0.77 -1.8
52,542 + EX31_RS10670 0.77 +0.6
52,543 - EX31_RS10670 0.77 -1.3
52,543 - EX31_RS10670 0.77 -0.8
52,543 - EX31_RS10670 0.77 +0.2
52,543 - EX31_RS10670 0.77 +1.1
52,543 - EX31_RS10670 0.77 -0.1
52,543 - EX31_RS10670 0.77 +1.5
52,574 - EX31_RS10670 0.79 +0.5
52,728 + +1.1
52,729 - -0.3
52,729 - -0.8
52,729 - -0.2
52,729 - -0.1
52,772 - +0.9
52,772 - +0.1
52,787 - -0.0
52,787 - -0.1
52,787 - +1.7
52,787 - +0.4
52,814 - -0.3
52,816 - -1.6
52,829 - +1.8
52,872 - +0.5
52,872 - -0.3
52,872 - +0.4
52,922 + -2.3
52,922 + +0.2
52,922 + +0.6
52,923 - -1.7
52,923 - +0.1
52,923 - +0.0
52,923 - +0.3
52,923 - +0.6
52,923 - +0.9
52,923 - -0.6
53,005 + EX31_RS10675 0.14 +0.8
53,084 - EX31_RS10675 0.23 -1.6
53,084 - EX31_RS10675 0.23 -0.6
53,084 - EX31_RS10675 0.23 +0.4
53,084 - EX31_RS10675 0.23 +0.3
53,084 - EX31_RS10675 0.23 +0.3
53,084 - EX31_RS10675 0.23 +0.8
53,084 - EX31_RS10675 0.23 +0.1
53,084 - EX31_RS10675 0.23 -0.2
53,084 - EX31_RS10675 0.23 +0.4
53,084 - EX31_RS10675 0.23 -0.4
53,084 - EX31_RS10675 0.23 +0.5
53,162 + EX31_RS10675 0.31 +0.9
53,169 - EX31_RS10675 0.32 +0.7
53,169 - EX31_RS10675 0.32 -2.2
53,169 - EX31_RS10675 0.32 +0.5
53,169 - EX31_RS10675 0.32 -0.4
53,190 - EX31_RS10675 0.34 -0.3
53,218 - EX31_RS10675 0.37 +0.5
53,218 - EX31_RS10675 0.37 -0.2
53,218 - EX31_RS10675 0.37 +0.3
53,218 - EX31_RS10675 0.37 +1.0
53,221 - EX31_RS10675 0.38 -0.1
53,221 - EX31_RS10675 0.38 -0.1
53,279 - EX31_RS10675 0.44 +0.2
53,279 - EX31_RS10675 0.44 -1.1
53,309 - EX31_RS10675 0.47 -1.6
53,331 + EX31_RS10675 0.49 -1.5
53,331 + EX31_RS10675 0.49 -1.0
53,332 - EX31_RS10675 0.50 +0.6
53,374 - EX31_RS10675 0.54 +0.3
53,374 - EX31_RS10675 0.54 +0.5
53,374 - EX31_RS10675 0.54 +0.1
53,374 - EX31_RS10675 0.54 +1.9
53,374 - EX31_RS10675 0.54 +0.8
53,374 - EX31_RS10675 0.54 -0.1
53,374 - EX31_RS10675 0.54 +0.4
53,378 + EX31_RS10675 0.54 -0.6
53,379 - EX31_RS10675 0.55 +0.8
53,379 - EX31_RS10675 0.55 +0.3
53,454 + EX31_RS10675 0.63 +0.2
53,581 - EX31_RS10675 0.76 +0.8
53,704 + EX31_RS10675 0.89 +0.1
53,756 - +0.9
53,756 - -1.2
53,842 - -0.9
53,864 - -0.0
53,866 - +0.0
53,892 + -2.0
53,892 + +0.4
53,892 + +0.7
53,908 + +1.1
53,908 + +0.1
53,908 + +0.4
53,908 + +0.2
53,908 + +0.2
53,908 + -1.2
53,908 + +0.8
53,908 + +0.5
53,909 - +0.8
53,912 + +0.1
53,913 - +0.4
54,034 + EX31_RS10680 0.18 -0.5
54,034 + EX31_RS10680 0.18 -0.4
54,097 + EX31_RS10680 0.26 +0.1
54,097 + EX31_RS10680 0.26 -0.3
54,097 + EX31_RS10680 0.26 +1.5
54,098 - EX31_RS10680 0.26 -0.7
54,101 + EX31_RS10680 0.27 -0.1
54,102 - EX31_RS10680 0.27 -0.1
54,108 + EX31_RS10680 0.28 -0.4
54,221 - EX31_RS10680 0.43 +0.8
54,319 + EX31_RS10680 0.55 +0.8
54,319 + EX31_RS10680 0.55 +0.4
54,319 + EX31_RS10680 0.55 +0.3
54,319 + EX31_RS10680 0.55 -0.0
54,319 + EX31_RS10680 0.55 +0.0
54,375 + EX31_RS10680 0.63 -0.2
54,375 + EX31_RS10680 0.63 -0.3
54,375 + EX31_RS10680 0.63 +0.6
54,690 + +0.2
54,690 + +2.0
54,690 + -0.5
54,691 - +0.5
54,691 - +0.7
54,691 - -0.2
54,691 - +0.4
54,749 + EX31_RS10685 0.12 -1.2
54,790 - EX31_RS10685 0.17 +0.5

Or see this region's nucleotide sequence