Strain Fitness in Rahnella sp. WP5 around EX31_RS25075

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01675 and EX31_RS25075 are separated by 905 nucleotidesEX31_RS25075 and EX31_RS01680 are separated by 209 nucleotidesEX31_RS01680 and EX31_RS01685 are separated by 14 nucleotides EX31_RS01675: EX31_RS01675 - hypothetical protein, at 369,119 to 369,388 _RS01675 EX31_RS25075: EX31_RS25075 - KTSC domain-containing protein, at 370,294 to 370,509 _RS25075 EX31_RS01680: EX31_RS01680 - antitermination protein Q, at 370,719 to 371,117 _RS01680 EX31_RS01685: EX31_RS01685 - DUF968 domain-containing protein, at 371,132 to 372,145 _RS01685 Position (kb) 370 371Strain fitness (log2 ratio) -2 -1 0 1 2 3at 369.317 kb on + strand, within EX31_RS01675at 369.318 kb on - strand, within EX31_RS01675at 369.354 kb on + strand, within EX31_RS01675at 369.354 kb on + strand, within EX31_RS01675at 369.354 kb on + strand, within EX31_RS01675at 369.355 kb on - strand, within EX31_RS01675at 369.355 kb on - strand, within EX31_RS01675at 369.355 kb on - strand, within EX31_RS01675at 369.355 kb on - strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.359 kb on - strand, within EX31_RS01675at 369.437 kb on - strandat 369.559 kb on - strandat 369.562 kb on + strandat 369.563 kb on - strandat 369.641 kb on + strandat 369.641 kb on + strandat 369.642 kb on - strandat 369.642 kb on - strandat 369.690 kb on + strandat 369.845 kb on - strandat 369.863 kb on - strandat 369.863 kb on - strandat 369.865 kb on + strandat 369.866 kb on - strandat 369.866 kb on - strandat 369.866 kb on - strandat 369.953 kb on + strandat 369.968 kb on - strandat 369.972 kb on - strandat 369.972 kb on - strandat 370.035 kb on + strandat 370.036 kb on - strandat 370.090 kb on - strandat 370.135 kb on - strandat 370.209 kb on - strandat 370.209 kb on - strandat 370.334 kb on + strand, within EX31_RS25075at 370.361 kb on + strand, within EX31_RS25075at 370.367 kb on + strand, within EX31_RS25075at 370.367 kb on + strand, within EX31_RS25075at 370.367 kb on + strand, within EX31_RS25075at 370.387 kb on - strand, within EX31_RS25075at 370.390 kb on + strand, within EX31_RS25075at 370.396 kb on + strand, within EX31_RS25075at 370.397 kb on - strand, within EX31_RS25075at 370.397 kb on - strand, within EX31_RS25075at 370.397 kb on - strand, within EX31_RS25075at 370.398 kb on + strand, within EX31_RS25075at 370.398 kb on + strand, within EX31_RS25075at 370.440 kb on - strand, within EX31_RS25075at 370.479 kb on + strand, within EX31_RS25075at 370.483 kb on + strand, within EX31_RS25075at 370.483 kb on + strand, within EX31_RS25075at 370.484 kb on - strand, within EX31_RS25075at 370.484 kb on - strand, within EX31_RS25075at 370.524 kb on - strandat 370.560 kb on + strandat 370.560 kb on + strandat 370.560 kb on + strandat 370.560 kb on + strandat 370.560 kb on + strandat 370.561 kb on - strandat 370.561 kb on - strandat 370.561 kb on - strandat 370.644 kb on - strandat 370.651 kb on - strandat 370.663 kb on + strandat 370.664 kb on - strandat 370.664 kb on - strandat 370.664 kb on - strandat 370.685 kb on + strandat 370.686 kb on - strandat 370.686 kb on - strandat 370.686 kb on - strandat 370.686 kb on - strandat 370.709 kb on + strandat 370.710 kb on - strandat 370.753 kb on + strandat 370.753 kb on + strandat 370.753 kb on + strandat 370.754 kb on - strandat 370.856 kb on - strand, within EX31_RS01680at 370.862 kb on + strand, within EX31_RS01680at 370.863 kb on - strand, within EX31_RS01680at 370.866 kb on + strand, within EX31_RS01680at 370.866 kb on + strand, within EX31_RS01680at 370.866 kb on + strand, within EX31_RS01680at 370.867 kb on - strand, within EX31_RS01680at 370.914 kb on + strand, within EX31_RS01680at 370.915 kb on - strand, within EX31_RS01680at 370.915 kb on - strand, within EX31_RS01680at 370.928 kb on + strand, within EX31_RS01680at 370.950 kb on + strand, within EX31_RS01680at 370.962 kb on + strand, within EX31_RS01680at 370.963 kb on - strand, within EX31_RS01680at 371.067 kb on - strand, within EX31_RS01680at 371.180 kb on + strandat 371.181 kb on - strandat 371.181 kb on - strandat 371.181 kb on - strandat 371.398 kb on - strand, within EX31_RS01685at 371.398 kb on - strand, within EX31_RS01685at 371.398 kb on - strand, within EX31_RS01685at 371.398 kb on - strand, within EX31_RS01685at 371.439 kb on + strand, within EX31_RS01685at 371.486 kb on + strand, within EX31_RS01685at 371.487 kb on - strand, within EX31_RS01685at 371.487 kb on - strand, within EX31_RS01685at 371.487 kb on - strand, within EX31_RS01685

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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369,317 + EX31_RS01675 0.73 +0.9
369,318 - EX31_RS01675 0.74 +0.1
369,354 + EX31_RS01675 0.87 +0.3
369,354 + EX31_RS01675 0.87 +0.9
369,354 + EX31_RS01675 0.87 -1.9
369,355 - EX31_RS01675 0.87 -0.2
369,355 - EX31_RS01675 0.87 -0.1
369,355 - EX31_RS01675 0.87 +1.2
369,355 - EX31_RS01675 0.87 +0.9
369,358 + EX31_RS01675 0.89 -1.2
369,358 + EX31_RS01675 0.89 -0.7
369,358 + EX31_RS01675 0.89 -0.1
369,358 + EX31_RS01675 0.89 +0.1
369,358 + EX31_RS01675 0.89 -0.7
369,359 - EX31_RS01675 0.89 +0.8
369,437 - -0.3
369,559 - +0.7
369,562 + +0.2
369,563 - -0.6
369,641 + -2.3
369,641 + -0.1
369,642 - +0.2
369,642 - +0.5
369,690 + -0.5
369,845 - +0.4
369,863 - +0.1
369,863 - +0.2
369,865 + +0.6
369,866 - +0.8
369,866 - +0.6
369,866 - +1.0
369,953 + -0.8
369,968 - +1.4
369,972 - +1.3
369,972 - -0.8
370,035 + -0.6
370,036 - -0.1
370,090 - +0.7
370,135 - +0.2
370,209 - -0.3
370,209 - +1.0
370,334 + EX31_RS25075 0.19 -0.3
370,361 + EX31_RS25075 0.31 +0.3
370,367 + EX31_RS25075 0.34 +0.9
370,367 + EX31_RS25075 0.34 -0.8
370,367 + EX31_RS25075 0.34 +0.1
370,387 - EX31_RS25075 0.43 -1.2
370,390 + EX31_RS25075 0.44 -2.3
370,396 + EX31_RS25075 0.47 +0.0
370,397 - EX31_RS25075 0.48 -0.2
370,397 - EX31_RS25075 0.48 +0.7
370,397 - EX31_RS25075 0.48 +0.9
370,398 + EX31_RS25075 0.48 -1.4
370,398 + EX31_RS25075 0.48 -0.5
370,440 - EX31_RS25075 0.68 -0.1
370,479 + EX31_RS25075 0.86 -0.4
370,483 + EX31_RS25075 0.88 -0.9
370,483 + EX31_RS25075 0.88 -0.2
370,484 - EX31_RS25075 0.88 +0.4
370,484 - EX31_RS25075 0.88 -0.0
370,524 - +0.3
370,560 + +0.4
370,560 + +1.5
370,560 + -0.4
370,560 + -1.3
370,560 + +0.1
370,561 - +0.2
370,561 - -0.9
370,561 - -1.2
370,644 - +1.5
370,651 - +0.8
370,663 + -0.9
370,664 - +0.3
370,664 - +1.5
370,664 - +0.5
370,685 + -2.1
370,686 - -0.2
370,686 - -0.0
370,686 - +0.9
370,686 - +0.5
370,709 + -0.2
370,710 - +0.4
370,753 + +0.2
370,753 + -0.1
370,753 + +0.4
370,754 - -0.5
370,856 - EX31_RS01680 0.34 -0.1
370,862 + EX31_RS01680 0.36 -0.8
370,863 - EX31_RS01680 0.36 +1.6
370,866 + EX31_RS01680 0.37 -1.1
370,866 + EX31_RS01680 0.37 -0.5
370,866 + EX31_RS01680 0.37 -2.1
370,867 - EX31_RS01680 0.37 -0.5
370,914 + EX31_RS01680 0.49 -0.3
370,915 - EX31_RS01680 0.49 +0.1
370,915 - EX31_RS01680 0.49 -0.5
370,928 + EX31_RS01680 0.52 +3.1
370,950 + EX31_RS01680 0.58 +1.4
370,962 + EX31_RS01680 0.61 -0.2
370,963 - EX31_RS01680 0.61 +1.8
371,067 - EX31_RS01680 0.87 -1.5
371,180 + +0.2
371,181 - +0.2
371,181 - +0.1
371,181 - +0.4
371,398 - EX31_RS01685 0.26 +0.5
371,398 - EX31_RS01685 0.26 +0.3
371,398 - EX31_RS01685 0.26 +0.4
371,398 - EX31_RS01685 0.26 -2.5
371,439 + EX31_RS01685 0.30 -0.2
371,486 + EX31_RS01685 0.35 +0.5
371,487 - EX31_RS01685 0.35 +1.4
371,487 - EX31_RS01685 0.35 +0.1
371,487 - EX31_RS01685 0.35 -0.5

Or see this region's nucleotide sequence