Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17570 and EX31_RS17575 overlap by 17 nucleotides EX31_RS17575 and EX31_RS17580 are separated by 10 nucleotides EX31_RS17580 and EX31_RS17585 overlap by 4 nucleotides
EX31_RS17570: EX31_RS17570 - extracellular solute-binding protein, at 67,630 to 68,667
_RS17570
EX31_RS17575: EX31_RS17575 - iron ABC transporter permease, at 68,651 to 70,339
_RS17575
EX31_RS17580: EX31_RS17580 - ABC transporter ATP-binding protein, at 70,350 to 71,045
_RS17580
EX31_RS17585: EX31_RS17585 - glutathione peroxidase, at 71,042 to 71,524
_RS17585
Position (kb) 68
69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 67.719 kb on + strand at 67.719 kb on + strand at 67.719 kb on + strand at 67.719 kb on + strand at 67.720 kb on - strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.797 kb on - strand, within EX31_RS17570 at 67.797 kb on - strand, within EX31_RS17570 at 67.813 kb on + strand, within EX31_RS17570 at 67.813 kb on + strand, within EX31_RS17570 at 67.843 kb on - strand, within EX31_RS17570 at 67.877 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.886 kb on + strand, within EX31_RS17570 at 67.887 kb on - strand, within EX31_RS17570 at 67.911 kb on - strand, within EX31_RS17570 at 67.911 kb on - strand, within EX31_RS17570 at 67.953 kb on + strand, within EX31_RS17570 at 67.954 kb on - strand, within EX31_RS17570 at 67.989 kb on + strand, within EX31_RS17570 at 67.989 kb on + strand, within EX31_RS17570 at 67.989 kb on + strand, within EX31_RS17570 at 68.102 kb on + strand, within EX31_RS17570 at 68.102 kb on + strand, within EX31_RS17570 at 68.102 kb on + strand, within EX31_RS17570 at 68.106 kb on + strand, within EX31_RS17570 at 68.106 kb on + strand, within EX31_RS17570 at 68.107 kb on - strand, within EX31_RS17570 at 68.107 kb on - strand, within EX31_RS17570 at 68.128 kb on + strand, within EX31_RS17570 at 68.133 kb on + strand, within EX31_RS17570 at 68.134 kb on - strand, within EX31_RS17570 at 68.220 kb on + strand, within EX31_RS17570 at 68.220 kb on + strand, within EX31_RS17570 at 68.220 kb on + strand, within EX31_RS17570 at 68.221 kb on - strand, within EX31_RS17570 at 68.221 kb on - strand, within EX31_RS17570 at 68.296 kb on + strand, within EX31_RS17570 at 68.296 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.299 kb on + strand, within EX31_RS17570 at 68.300 kb on - strand, within EX31_RS17570 at 68.300 kb on - strand, within EX31_RS17570 at 68.300 kb on - strand, within EX31_RS17570 at 68.300 kb on - strand, within EX31_RS17570 at 68.301 kb on + strand, within EX31_RS17570 at 68.343 kb on + strand, within EX31_RS17570 at 68.344 kb on - strand, within EX31_RS17570 at 68.344 kb on - strand, within EX31_RS17570 at 68.361 kb on + strand, within EX31_RS17570 at 68.376 kb on + strand, within EX31_RS17570 at 68.470 kb on + strand, within EX31_RS17570 at 68.471 kb on - strand, within EX31_RS17570 at 68.617 kb on + strand at 68.618 kb on - strand at 68.623 kb on - strand at 68.642 kb on + strand at 68.646 kb on + strand at 68.646 kb on + strand at 68.646 kb on + strand at 68.647 kb on - strand at 68.665 kb on + strand at 68.666 kb on - strand at 68.718 kb on + strand at 68.745 kb on + strand at 68.746 kb on - strand at 68.746 kb on - strand at 68.749 kb on + strand at 68.763 kb on + strand at 68.774 kb on - strand at 68.774 kb on - strand at 68.774 kb on - strand at 68.833 kb on + strand, within EX31_RS17575 at 68.962 kb on - strand, within EX31_RS17575 at 69.002 kb on + strand, within EX31_RS17575 at 69.002 kb on + strand, within EX31_RS17575 at 69.002 kb on + strand, within EX31_RS17575 at 69.002 kb on + strand, within EX31_RS17575 at 69.003 kb on - strand, within EX31_RS17575 at 69.004 kb on + strand, within EX31_RS17575 at 69.004 kb on + strand, within EX31_RS17575 at 69.005 kb on - strand, within EX31_RS17575 at 69.005 kb on - strand, within EX31_RS17575 at 69.005 kb on - strand, within EX31_RS17575 at 69.005 kb on - strand, within EX31_RS17575 at 69.005 kb on - strand, within EX31_RS17575 at 69.051 kb on + strand, within EX31_RS17575 at 69.114 kb on + strand, within EX31_RS17575 at 69.115 kb on - strand, within EX31_RS17575 at 69.115 kb on - strand, within EX31_RS17575 at 69.136 kb on + strand, within EX31_RS17575 at 69.151 kb on - strand, within EX31_RS17575 at 69.159 kb on - strand, within EX31_RS17575 at 69.164 kb on + strand, within EX31_RS17575 at 69.164 kb on + strand, within EX31_RS17575 at 69.318 kb on + strand, within EX31_RS17575 at 69.319 kb on - strand, within EX31_RS17575 at 69.386 kb on + strand, within EX31_RS17575 at 69.387 kb on - strand, within EX31_RS17575 at 69.387 kb on - strand, within EX31_RS17575 at 69.454 kb on + strand, within EX31_RS17575 at 69.454 kb on + strand, within EX31_RS17575 at 69.455 kb on - strand, within EX31_RS17575 at 69.543 kb on + strand, within EX31_RS17575 at 69.618 kb on + strand, within EX31_RS17575 at 69.624 kb on + strand, within EX31_RS17575 at 69.648 kb on + strand, within EX31_RS17575 at 69.648 kb on + strand, within EX31_RS17575 at 69.697 kb on + strand, within EX31_RS17575 at 69.697 kb on + strand, within EX31_RS17575 at 69.747 kb on + strand, within EX31_RS17575 at 69.784 kb on + strand, within EX31_RS17575 at 69.785 kb on - strand, within EX31_RS17575 at 69.832 kb on - strand, within EX31_RS17575 at 69.912 kb on + strand, within EX31_RS17575 at 69.912 kb on + strand, within EX31_RS17575 at 69.919 kb on + strand, within EX31_RS17575 at 69.930 kb on + strand, within EX31_RS17575 at 69.930 kb on + strand, within EX31_RS17575 at 70.123 kb on + strand, within EX31_RS17575 at 70.134 kb on + strand, within EX31_RS17575 at 70.134 kb on + strand, within EX31_RS17575 at 70.135 kb on - strand, within EX31_RS17575 at 70.135 kb on - strand, within EX31_RS17575 at 70.137 kb on + strand, within EX31_RS17575 at 70.137 kb on + strand, within EX31_RS17575 at 70.138 kb on - strand, within EX31_RS17575 at 70.138 kb on - strand, within EX31_RS17575 at 70.191 kb on + strand at 70.215 kb on + strand at 70.215 kb on + strand at 70.215 kb on + strand at 70.216 kb on - strand at 70.220 kb on + strand at 70.221 kb on - strand at 70.244 kb on + strand at 70.244 kb on + strand at 70.245 kb on - strand at 70.300 kb on + strand at 70.301 kb on - strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.302 kb on + strand at 70.303 kb on - strand at 70.392 kb on + strand at 70.462 kb on + strand, within EX31_RS17580 at 70.542 kb on + strand, within EX31_RS17580 at 70.542 kb on + strand, within EX31_RS17580 at 70.623 kb on + strand, within EX31_RS17580 at 70.623 kb on + strand, within EX31_RS17580 at 70.623 kb on + strand, within EX31_RS17580 at 70.624 kb on - strand, within EX31_RS17580 at 70.740 kb on - strand, within EX31_RS17580 at 70.831 kb on + strand, within EX31_RS17580 at 70.831 kb on + strand, within EX31_RS17580 at 70.831 kb on + strand, within EX31_RS17580 at 70.832 kb on - strand, within EX31_RS17580 at 70.832 kb on - strand, within EX31_RS17580 at 70.832 kb on - strand, within EX31_RS17580 at 70.983 kb on + strand at 70.983 kb on + strand at 71.002 kb on - strand at 71.002 kb on - strand at 71.011 kb on + strand at 71.011 kb on + strand at 71.044 kb on - strand at 71.044 kb on - strand at 71.144 kb on - strand, within EX31_RS17585 at 71.144 kb on - strand, within EX31_RS17585 at 71.200 kb on - strand, within EX31_RS17585 at 71.200 kb on - strand, within EX31_RS17585 at 71.203 kb on + strand, within EX31_RS17585 at 71.203 kb on + strand, within EX31_RS17585 at 71.204 kb on - strand, within EX31_RS17585 at 71.219 kb on - strand, within EX31_RS17585 at 71.249 kb on + strand, within EX31_RS17585 at 71.268 kb on + strand, within EX31_RS17585 at 71.268 kb on + strand, within EX31_RS17585 at 71.269 kb on - strand, within EX31_RS17585 at 71.269 kb on - strand, within EX31_RS17585
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 67,719 + +0.2 67,719 + +0.1 67,719 + -1.0 67,719 + +0.7 67,720 - -0.3 67,732 + -1.2 67,732 + -0.6 67,732 + -0.4 67,732 + -0.5 67,732 + +0.6 67,797 - EX31_RS17570 0.16 -0.2 67,797 - EX31_RS17570 0.16 +0.6 67,813 + EX31_RS17570 0.18 +0.1 67,813 + EX31_RS17570 0.18 -0.3 67,843 - EX31_RS17570 0.21 -0.8 67,877 + EX31_RS17570 0.24 -0.7 67,886 + EX31_RS17570 0.25 -1.2 67,886 + EX31_RS17570 0.25 -1.4 67,886 + EX31_RS17570 0.25 -0.5 67,886 + EX31_RS17570 0.25 -0.3 67,886 + EX31_RS17570 0.25 +0.9 67,887 - EX31_RS17570 0.25 -0.4 67,911 - EX31_RS17570 0.27 -0.0 67,911 - EX31_RS17570 0.27 -0.1 67,953 + EX31_RS17570 0.31 -0.2 67,954 - EX31_RS17570 0.31 -0.5 67,989 + EX31_RS17570 0.35 +0.1 67,989 + EX31_RS17570 0.35 +0.7 67,989 + EX31_RS17570 0.35 -1.4 68,102 + EX31_RS17570 0.45 -0.6 68,102 + EX31_RS17570 0.45 +0.4 68,102 + EX31_RS17570 0.45 -1.1 68,106 + EX31_RS17570 0.46 -1.7 68,106 + EX31_RS17570 0.46 -2.7 68,107 - EX31_RS17570 0.46 +0.6 68,107 - EX31_RS17570 0.46 -0.5 68,128 + EX31_RS17570 0.48 +1.2 68,133 + EX31_RS17570 0.48 +0.0 68,134 - EX31_RS17570 0.49 +0.4 68,220 + EX31_RS17570 0.57 -1.7 68,220 + EX31_RS17570 0.57 +0.8 68,220 + EX31_RS17570 0.57 -0.2 68,221 - EX31_RS17570 0.57 +0.0 68,221 - EX31_RS17570 0.57 +0.6 68,296 + EX31_RS17570 0.64 +0.7 68,296 + EX31_RS17570 0.64 -0.5 68,299 + EX31_RS17570 0.64 +0.7 68,299 + EX31_RS17570 0.64 -0.9 68,299 + EX31_RS17570 0.64 +0.3 68,299 + EX31_RS17570 0.64 -1.6 68,299 + EX31_RS17570 0.64 -1.9 68,299 + EX31_RS17570 0.64 -0.9 68,299 + EX31_RS17570 0.64 +0.3 68,299 + EX31_RS17570 0.64 +0.2 68,299 + EX31_RS17570 0.64 +0.6 68,299 + EX31_RS17570 0.64 -1.0 68,299 + EX31_RS17570 0.64 -0.5 68,299 + EX31_RS17570 0.64 -0.3 68,299 + EX31_RS17570 0.64 +0.2 68,300 - EX31_RS17570 0.65 -0.6 68,300 - EX31_RS17570 0.65 +0.4 68,300 - EX31_RS17570 0.65 -1.2 68,300 - EX31_RS17570 0.65 +0.3 68,301 + EX31_RS17570 0.65 -0.4 68,343 + EX31_RS17570 0.69 +1.1 68,344 - EX31_RS17570 0.69 +0.1 68,344 - EX31_RS17570 0.69 +0.0 68,361 + EX31_RS17570 0.70 +0.4 68,376 + EX31_RS17570 0.72 -0.4 68,470 + EX31_RS17570 0.81 +1.1 68,471 - EX31_RS17570 0.81 -1.0 68,617 + -0.1 68,618 - +0.6 68,623 - +0.4 68,642 + -0.3 68,646 + -0.5 68,646 + +0.7 68,646 + +0.2 68,647 - -0.0 68,665 + +1.6 68,666 - -0.4 68,718 + +0.4 68,745 + +0.3 68,746 - +0.1 68,746 - -0.8 68,749 + +0.9 68,763 + -0.6 68,774 - -0.5 68,774 - +0.7 68,774 - -0.4 68,833 + EX31_RS17575 0.11 +0.6 68,962 - EX31_RS17575 0.18 -1.0 69,002 + EX31_RS17575 0.21 -0.1 69,002 + EX31_RS17575 0.21 -0.9 69,002 + EX31_RS17575 0.21 -0.9 69,002 + EX31_RS17575 0.21 -0.1 69,003 - EX31_RS17575 0.21 -0.6 69,004 + EX31_RS17575 0.21 +0.3 69,004 + EX31_RS17575 0.21 -0.7 69,005 - EX31_RS17575 0.21 -0.5 69,005 - EX31_RS17575 0.21 -0.4 69,005 - EX31_RS17575 0.21 -0.5 69,005 - EX31_RS17575 0.21 -1.3 69,005 - EX31_RS17575 0.21 +0.3 69,051 + EX31_RS17575 0.24 +0.0 69,114 + EX31_RS17575 0.27 -0.2 69,115 - EX31_RS17575 0.27 +0.3 69,115 - EX31_RS17575 0.27 -1.4 69,136 + EX31_RS17575 0.29 -1.8 69,151 - EX31_RS17575 0.30 -0.6 69,159 - EX31_RS17575 0.30 +1.3 69,164 + EX31_RS17575 0.30 -1.8 69,164 + EX31_RS17575 0.30 -0.1 69,318 + EX31_RS17575 0.39 -1.3 69,319 - EX31_RS17575 0.40 +0.4 69,386 + EX31_RS17575 0.44 +0.4 69,387 - EX31_RS17575 0.44 +1.6 69,387 - EX31_RS17575 0.44 -0.4 69,454 + EX31_RS17575 0.48 +1.4 69,454 + EX31_RS17575 0.48 -1.5 69,455 - EX31_RS17575 0.48 -0.1 69,543 + EX31_RS17575 0.53 -0.5 69,618 + EX31_RS17575 0.57 -0.4 69,624 + EX31_RS17575 0.58 -0.0 69,648 + EX31_RS17575 0.59 -0.4 69,648 + EX31_RS17575 0.59 -0.2 69,697 + EX31_RS17575 0.62 -1.0 69,697 + EX31_RS17575 0.62 +0.1 69,747 + EX31_RS17575 0.65 -2.0 69,784 + EX31_RS17575 0.67 -1.5 69,785 - EX31_RS17575 0.67 -0.3 69,832 - EX31_RS17575 0.70 -0.7 69,912 + EX31_RS17575 0.75 -0.1 69,912 + EX31_RS17575 0.75 +0.3 69,919 + EX31_RS17575 0.75 -1.8 69,930 + EX31_RS17575 0.76 +0.8 69,930 + EX31_RS17575 0.76 -1.3 70,123 + EX31_RS17575 0.87 -0.8 70,134 + EX31_RS17575 0.88 -0.0 70,134 + EX31_RS17575 0.88 -0.5 70,135 - EX31_RS17575 0.88 +0.2 70,135 - EX31_RS17575 0.88 -0.3 70,137 + EX31_RS17575 0.88 +0.5 70,137 + EX31_RS17575 0.88 +1.2 70,138 - EX31_RS17575 0.88 -0.2 70,138 - EX31_RS17575 0.88 +0.8 70,191 + -0.6 70,215 + -0.3 70,215 + -0.1 70,215 + -1.4 70,216 - -1.9 70,220 + -0.5 70,221 - -0.8 70,244 + +0.9 70,244 + -0.8 70,245 - -0.4 70,300 + +0.1 70,301 - +0.9 70,302 + -0.8 70,302 + +0.2 70,302 + +1.6 70,302 + +0.3 70,302 + -1.4 70,302 + +0.3 70,302 + +0.3 70,302 + +0.1 70,302 + +1.2 70,303 - +1.1 70,392 + -0.3 70,462 + EX31_RS17580 0.16 +0.0 70,542 + EX31_RS17580 0.28 -0.7 70,542 + EX31_RS17580 0.28 +0.7 70,623 + EX31_RS17580 0.39 +0.4 70,623 + EX31_RS17580 0.39 -0.7 70,623 + EX31_RS17580 0.39 +1.1 70,624 - EX31_RS17580 0.39 +1.3 70,740 - EX31_RS17580 0.56 -0.3 70,831 + EX31_RS17580 0.69 -2.5 70,831 + EX31_RS17580 0.69 -0.3 70,831 + EX31_RS17580 0.69 +0.5 70,832 - EX31_RS17580 0.69 +0.4 70,832 - EX31_RS17580 0.69 -2.8 70,832 - EX31_RS17580 0.69 -0.2 70,983 + -0.8 70,983 + -0.2 71,002 - +0.2 71,002 - -0.7 71,011 + +0.3 71,011 + +1.0 71,044 - +0.8 71,044 - -0.7 71,144 - EX31_RS17585 0.21 -0.2 71,144 - EX31_RS17585 0.21 +0.1 71,200 - EX31_RS17585 0.33 -0.2 71,200 - EX31_RS17585 0.33 +0.2 71,203 + EX31_RS17585 0.33 +1.3 71,203 + EX31_RS17585 0.33 -0.1 71,204 - EX31_RS17585 0.34 +2.2 71,219 - EX31_RS17585 0.37 +0.9 71,249 + EX31_RS17585 0.43 -1.0 71,268 + EX31_RS17585 0.47 +0.1 71,268 + EX31_RS17585 0.47 +0.3 71,269 - EX31_RS17585 0.47 +1.2 71,269 - EX31_RS17585 0.47 -2.0
Or see this region's nucleotide sequence