Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12630 and EX31_RS12635 are separated by 240 nucleotides EX31_RS12635 and EX31_RS12640 overlap by 4 nucleotides EX31_RS12640 and EX31_RS12645 are separated by 2 nucleotides EX31_RS12645 and EX31_RS12650 are separated by 147 nucleotides EX31_RS12650 and EX31_RS12655 are separated by 132 nucleotides
EX31_RS12630: EX31_RS12630 - DoxX family protein, at 198,213 to 198,605
_RS12630
EX31_RS12635: EX31_RS12635 - cell division protein FtsH, at 198,846 to 199,130
_RS12635
EX31_RS12640: EX31_RS12640 - membrane protein, at 199,127 to 199,534
_RS12640
EX31_RS12645: EX31_RS12645 - DUF883 domain-containing protein, at 199,537 to 199,839
_RS12645
EX31_RS12650: EX31_RS12650 - DUF1090 domain-containing protein, at 199,987 to 200,364
_RS12650
EX31_RS12655: EX31_RS12655 - EnvZ/OmpR regulon moderator MzrA, at 200,497 to 200,880
_RS12655
Position (kb) 199
200 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.134 kb on + strand at 198.162 kb on + strand at 198.162 kb on + strand at 198.162 kb on + strand at 198.162 kb on + strand at 198.163 kb on - strand at 198.163 kb on - strand at 198.163 kb on - strand at 198.170 kb on + strand at 198.174 kb on + strand at 198.174 kb on + strand at 198.174 kb on + strand at 198.174 kb on + strand at 198.175 kb on - strand at 198.175 kb on - strand at 198.175 kb on - strand at 198.175 kb on - strand at 198.175 kb on - strand at 198.178 kb on + strand at 198.178 kb on + strand at 198.179 kb on - strand at 198.181 kb on - strand at 198.293 kb on + strand, within EX31_RS12630 at 198.369 kb on - strand, within EX31_RS12630 at 198.398 kb on + strand, within EX31_RS12630 at 198.405 kb on - strand, within EX31_RS12630 at 198.452 kb on + strand, within EX31_RS12630 at 198.453 kb on - strand, within EX31_RS12630 at 198.453 kb on - strand, within EX31_RS12630 at 198.497 kb on - strand, within EX31_RS12630 at 198.497 kb on - strand, within EX31_RS12630 at 198.497 kb on - strand, within EX31_RS12630 at 198.497 kb on - strand, within EX31_RS12630 at 198.497 kb on - strand, within EX31_RS12630 at 198.497 kb on - strand, within EX31_RS12630 at 198.497 kb on - strand, within EX31_RS12630 at 198.497 kb on - strand, within EX31_RS12630 at 198.515 kb on - strand, within EX31_RS12630 at 198.546 kb on - strand, within EX31_RS12630 at 198.546 kb on - strand, within EX31_RS12630 at 198.554 kb on + strand, within EX31_RS12630 at 198.554 kb on + strand, within EX31_RS12630 at 198.555 kb on - strand, within EX31_RS12630 at 198.555 kb on - strand, within EX31_RS12630 at 198.555 kb on - strand, within EX31_RS12630 at 198.555 kb on - strand, within EX31_RS12630 at 198.555 kb on - strand, within EX31_RS12630 at 198.566 kb on + strand at 198.567 kb on - strand at 198.567 kb on - strand at 198.567 kb on - strand at 198.567 kb on - strand at 198.567 kb on - strand at 198.579 kb on + strand at 198.579 kb on + strand at 198.594 kb on + strand at 198.594 kb on + strand at 198.595 kb on - strand at 198.640 kb on + strand at 198.641 kb on - strand at 198.669 kb on - strand at 198.705 kb on - strand at 198.705 kb on - strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.720 kb on + strand at 198.721 kb on - strand at 198.721 kb on - strand at 198.725 kb on + strand at 198.725 kb on + strand at 198.725 kb on + strand at 198.725 kb on + strand at 198.725 kb on + strand at 198.725 kb on + strand at 198.725 kb on + strand at 198.725 kb on + strand at 198.726 kb on - strand at 198.726 kb on - strand at 198.726 kb on - strand at 198.726 kb on - strand at 198.730 kb on + strand at 198.737 kb on + strand at 198.737 kb on + strand at 198.738 kb on - strand at 198.738 kb on - strand at 198.760 kb on + strand at 198.761 kb on - strand at 198.761 kb on - strand at 198.778 kb on + strand at 198.847 kb on + strand at 198.848 kb on - strand at 198.848 kb on - strand at 198.848 kb on - strand at 198.879 kb on + strand, within EX31_RS12635 at 198.879 kb on + strand, within EX31_RS12635 at 198.879 kb on + strand, within EX31_RS12635 at 198.879 kb on + strand, within EX31_RS12635 at 198.880 kb on - strand, within EX31_RS12635 at 198.880 kb on - strand, within EX31_RS12635 at 198.880 kb on - strand, within EX31_RS12635 at 198.880 kb on - strand, within EX31_RS12635 at 198.880 kb on - strand, within EX31_RS12635 at 198.880 kb on - strand, within EX31_RS12635 at 198.880 kb on - strand, within EX31_RS12635 at 198.880 kb on - strand, within EX31_RS12635 at 198.894 kb on - strand, within EX31_RS12635 at 198.947 kb on - strand, within EX31_RS12635 at 198.979 kb on + strand, within EX31_RS12635 at 198.979 kb on + strand, within EX31_RS12635 at 198.979 kb on + strand, within EX31_RS12635 at 198.980 kb on - strand, within EX31_RS12635 at 198.980 kb on - strand, within EX31_RS12635 at 198.980 kb on - strand, within EX31_RS12635 at 198.980 kb on - strand, within EX31_RS12635 at 198.980 kb on - strand, within EX31_RS12635 at 198.983 kb on + strand, within EX31_RS12635 at 198.983 kb on + strand, within EX31_RS12635 at 198.983 kb on + strand, within EX31_RS12635 at 198.983 kb on + strand, within EX31_RS12635 at 198.984 kb on - strand, within EX31_RS12635 at 198.984 kb on - strand, within EX31_RS12635 at 198.984 kb on - strand, within EX31_RS12635 at 198.984 kb on - strand, within EX31_RS12635 at 198.990 kb on - strand, within EX31_RS12635 at 198.990 kb on - strand, within EX31_RS12635 at 198.990 kb on - strand, within EX31_RS12635 at 199.130 kb on + strand at 199.130 kb on + strand at 199.130 kb on + strand at 199.130 kb on + strand at 199.130 kb on + strand at 199.130 kb on + strand at 199.131 kb on - strand at 199.190 kb on - strand, within EX31_RS12640 at 199.190 kb on - strand, within EX31_RS12640 at 199.190 kb on - strand, within EX31_RS12640 at 199.190 kb on - strand, within EX31_RS12640 at 199.290 kb on + strand, within EX31_RS12640 at 199.291 kb on - strand, within EX31_RS12640 at 199.314 kb on - strand, within EX31_RS12640 at 199.314 kb on - strand, within EX31_RS12640 at 199.333 kb on + strand, within EX31_RS12640 at 199.334 kb on - strand, within EX31_RS12640 at 199.334 kb on - strand, within EX31_RS12640 at 199.349 kb on - strand, within EX31_RS12640 at 199.360 kb on + strand, within EX31_RS12640 at 199.360 kb on + strand, within EX31_RS12640 at 199.373 kb on - strand, within EX31_RS12640 at 199.373 kb on - strand, within EX31_RS12640 at 199.379 kb on + strand, within EX31_RS12640 at 199.380 kb on - strand, within EX31_RS12640 at 199.619 kb on + strand, within EX31_RS12645 at 199.619 kb on + strand, within EX31_RS12645 at 199.619 kb on + strand, within EX31_RS12645 at 199.619 kb on + strand, within EX31_RS12645 at 199.674 kb on + strand, within EX31_RS12645 at 199.674 kb on + strand, within EX31_RS12645 at 199.675 kb on - strand, within EX31_RS12645 at 199.719 kb on + strand, within EX31_RS12645 at 199.785 kb on + strand, within EX31_RS12645 at 199.785 kb on + strand, within EX31_RS12645 at 199.786 kb on - strand, within EX31_RS12645 at 199.786 kb on - strand, within EX31_RS12645 at 199.786 kb on - strand, within EX31_RS12645 at 199.827 kb on + strand at 199.827 kb on + strand at 199.827 kb on + strand at 199.828 kb on - strand at 199.828 kb on - strand at 199.828 kb on - strand at 199.828 kb on - strand at 199.828 kb on - strand at 199.828 kb on - strand at 199.828 kb on - strand at 199.828 kb on - strand at 199.828 kb on - strand at 199.828 kb on - strand at 199.830 kb on + strand at 199.830 kb on + strand at 199.830 kb on + strand at 199.830 kb on + strand at 199.831 kb on - strand at 199.833 kb on + strand at 199.834 kb on - strand at 199.834 kb on - strand at 199.843 kb on + strand at 199.843 kb on + strand at 199.844 kb on - strand at 199.844 kb on - strand at 199.844 kb on - strand at 199.844 kb on - strand at 199.844 kb on - strand at 199.844 kb on - strand at 199.844 kb on - strand at 199.844 kb on - strand at 199.855 kb on + strand at 199.855 kb on + strand at 199.856 kb on - strand at 199.856 kb on - strand at 199.856 kb on - strand at 199.856 kb on - strand at 199.856 kb on - strand at 199.860 kb on + strand at 199.877 kb on + strand at 199.877 kb on + strand at 199.878 kb on - strand at 199.878 kb on - strand at 199.942 kb on - strand at 199.942 kb on - strand at 199.989 kb on - strand at 200.178 kb on + strand, within EX31_RS12650 at 200.179 kb on - strand, within EX31_RS12650 at 200.189 kb on - strand, within EX31_RS12650 at 200.189 kb on - strand, within EX31_RS12650 at 200.271 kb on + strand, within EX31_RS12650 at 200.271 kb on + strand, within EX31_RS12650 at 200.272 kb on - strand, within EX31_RS12650 at 200.272 kb on - strand, within EX31_RS12650 at 200.317 kb on - strand, within EX31_RS12650 at 200.317 kb on - strand, within EX31_RS12650 at 200.317 kb on - strand, within EX31_RS12650 at 200.350 kb on + strand at 200.351 kb on - strand at 200.351 kb on - strand at 200.351 kb on - strand at 200.403 kb on + strand at 200.403 kb on + strand at 200.403 kb on + strand at 200.403 kb on + strand at 200.403 kb on + strand at 200.404 kb on - strand at 200.404 kb on - strand at 200.404 kb on - strand at 200.404 kb on - strand at 200.404 kb on - strand at 200.404 kb on - strand at 200.404 kb on - strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.427 kb on - strand at 200.427 kb on - strand at 200.435 kb on + strand at 200.443 kb on - strand at 200.443 kb on - strand at 200.447 kb on + strand at 200.448 kb on - strand at 200.448 kb on - strand at 200.448 kb on - strand at 200.449 kb on + strand at 200.449 kb on + strand at 200.450 kb on - strand at 200.450 kb on - strand at 200.450 kb on - strand at 200.450 kb on - strand at 200.450 kb on - strand at 200.450 kb on - strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.462 kb on + strand at 200.463 kb on - strand at 200.463 kb on - strand at 200.463 kb on - strand at 200.463 kb on - strand at 200.463 kb on - strand at 200.463 kb on - strand at 200.466 kb on + strand at 200.466 kb on + strand at 200.466 kb on + strand at 200.466 kb on + strand at 200.466 kb on + strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.467 kb on - strand at 200.472 kb on + strand at 200.472 kb on + strand at 200.472 kb on + strand at 200.472 kb on + strand at 200.472 kb on + strand at 200.473 kb on - strand at 200.473 kb on - strand at 200.508 kb on + strand at 200.508 kb on + strand at 200.508 kb on + strand at 200.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 198,134 + +0.2 198,162 + +0.5 198,162 + -0.9 198,162 + +0.4 198,162 + -0.0 198,163 - -0.0 198,163 - +0.1 198,163 - -0.8 198,170 + -0.3 198,174 + +0.6 198,174 + +0.6 198,174 + +0.1 198,174 + -0.2 198,175 - +0.3 198,175 - +0.8 198,175 - +0.4 198,175 - -1.0 198,175 - +0.6 198,178 + +0.2 198,178 + -0.3 198,179 - -0.8 198,181 - -0.7 198,293 + EX31_RS12630 0.20 +0.1 198,369 - EX31_RS12630 0.40 -0.1 198,398 + EX31_RS12630 0.47 -0.1 198,405 - EX31_RS12630 0.49 +0.5 198,452 + EX31_RS12630 0.61 +0.2 198,453 - EX31_RS12630 0.61 -0.2 198,453 - EX31_RS12630 0.61 +0.2 198,497 - EX31_RS12630 0.72 -1.2 198,497 - EX31_RS12630 0.72 -0.5 198,497 - EX31_RS12630 0.72 -0.4 198,497 - EX31_RS12630 0.72 +0.5 198,497 - EX31_RS12630 0.72 +1.1 198,497 - EX31_RS12630 0.72 -1.7 198,497 - EX31_RS12630 0.72 +0.4 198,497 - EX31_RS12630 0.72 -1.8 198,515 - EX31_RS12630 0.77 +0.5 198,546 - EX31_RS12630 0.85 +0.1 198,546 - EX31_RS12630 0.85 -2.0 198,554 + EX31_RS12630 0.87 -2.0 198,554 + EX31_RS12630 0.87 -0.3 198,555 - EX31_RS12630 0.87 -0.2 198,555 - EX31_RS12630 0.87 -0.3 198,555 - EX31_RS12630 0.87 +0.4 198,555 - EX31_RS12630 0.87 +0.1 198,555 - EX31_RS12630 0.87 -0.6 198,566 + +0.5 198,567 - -1.1 198,567 - -0.2 198,567 - +0.2 198,567 - -0.5 198,567 - +0.4 198,579 + +0.6 198,579 + +0.3 198,594 + +0.1 198,594 + +0.2 198,595 - -0.5 198,640 + -0.6 198,641 - +0.2 198,669 - +0.1 198,705 - +0.1 198,705 - -0.9 198,707 + -0.1 198,707 + -0.0 198,707 + -0.5 198,707 + +0.4 198,707 + +0.1 198,707 + -0.1 198,707 + +0.0 198,708 - +0.1 198,708 - +0.2 198,708 - -0.0 198,708 - -0.5 198,708 - -0.0 198,720 + +0.8 198,721 - +0.2 198,721 - +0.1 198,725 + +1.0 198,725 + -0.3 198,725 + +0.6 198,725 + -0.4 198,725 + -0.7 198,725 + -0.7 198,725 + +0.4 198,725 + +0.4 198,726 - -0.6 198,726 - -1.0 198,726 - -0.0 198,726 - -0.2 198,730 + -0.1 198,737 + +0.1 198,737 + +0.5 198,738 - -0.1 198,738 - +0.1 198,760 + -1.0 198,761 - +1.9 198,761 - -1.6 198,778 + -0.1 198,847 + +0.4 198,848 - +0.1 198,848 - -0.7 198,848 - +0.6 198,879 + EX31_RS12635 0.12 +0.2 198,879 + EX31_RS12635 0.12 -0.2 198,879 + EX31_RS12635 0.12 -0.8 198,879 + EX31_RS12635 0.12 -0.5 198,880 - EX31_RS12635 0.12 +0.8 198,880 - EX31_RS12635 0.12 +0.6 198,880 - EX31_RS12635 0.12 +0.8 198,880 - EX31_RS12635 0.12 +0.1 198,880 - EX31_RS12635 0.12 -0.0 198,880 - EX31_RS12635 0.12 +0.2 198,880 - EX31_RS12635 0.12 +0.5 198,880 - EX31_RS12635 0.12 -0.4 198,894 - EX31_RS12635 0.17 +0.2 198,947 - EX31_RS12635 0.35 +0.1 198,979 + EX31_RS12635 0.47 +0.4 198,979 + EX31_RS12635 0.47 +0.4 198,979 + EX31_RS12635 0.47 +0.4 198,980 - EX31_RS12635 0.47 -0.5 198,980 - EX31_RS12635 0.47 -0.1 198,980 - EX31_RS12635 0.47 -0.8 198,980 - EX31_RS12635 0.47 -0.6 198,980 - EX31_RS12635 0.47 +0.5 198,983 + EX31_RS12635 0.48 -1.0 198,983 + EX31_RS12635 0.48 +0.1 198,983 + EX31_RS12635 0.48 +0.4 198,983 + EX31_RS12635 0.48 +1.3 198,984 - EX31_RS12635 0.48 +0.2 198,984 - EX31_RS12635 0.48 -0.3 198,984 - EX31_RS12635 0.48 +0.7 198,984 - EX31_RS12635 0.48 +0.3 198,990 - EX31_RS12635 0.51 -1.6 198,990 - EX31_RS12635 0.51 +0.1 198,990 - EX31_RS12635 0.51 -0.2 199,130 + -1.6 199,130 + -0.5 199,130 + -0.3 199,130 + +0.5 199,130 + +0.1 199,130 + +0.1 199,131 - -0.0 199,190 - EX31_RS12640 0.15 -0.4 199,190 - EX31_RS12640 0.15 +0.7 199,190 - EX31_RS12640 0.15 +0.8 199,190 - EX31_RS12640 0.15 +0.1 199,290 + EX31_RS12640 0.40 +0.4 199,291 - EX31_RS12640 0.40 -0.1 199,314 - EX31_RS12640 0.46 +0.0 199,314 - EX31_RS12640 0.46 +0.2 199,333 + EX31_RS12640 0.50 +0.6 199,334 - EX31_RS12640 0.51 -0.3 199,334 - EX31_RS12640 0.51 +0.8 199,349 - EX31_RS12640 0.54 +0.5 199,360 + EX31_RS12640 0.57 +0.9 199,360 + EX31_RS12640 0.57 +0.5 199,373 - EX31_RS12640 0.60 -0.1 199,373 - EX31_RS12640 0.60 +0.1 199,379 + EX31_RS12640 0.62 -0.3 199,380 - EX31_RS12640 0.62 +0.6 199,619 + EX31_RS12645 0.27 -0.6 199,619 + EX31_RS12645 0.27 +0.3 199,619 + EX31_RS12645 0.27 -0.6 199,619 + EX31_RS12645 0.27 +0.1 199,674 + EX31_RS12645 0.45 -0.3 199,674 + EX31_RS12645 0.45 -0.4 199,675 - EX31_RS12645 0.46 -0.1 199,719 + EX31_RS12645 0.60 -0.6 199,785 + EX31_RS12645 0.82 +1.1 199,785 + EX31_RS12645 0.82 -0.6 199,786 - EX31_RS12645 0.82 +0.1 199,786 - EX31_RS12645 0.82 +0.0 199,786 - EX31_RS12645 0.82 -1.2 199,827 + +0.5 199,827 + -1.4 199,827 + +0.3 199,828 - +0.1 199,828 - -0.3 199,828 - +0.4 199,828 - -0.1 199,828 - +1.1 199,828 - -0.5 199,828 - -0.6 199,828 - -0.2 199,828 - +0.1 199,828 - -0.1 199,830 + +1.4 199,830 + -0.2 199,830 + +0.9 199,830 + +0.1 199,831 - -0.3 199,833 + -0.3 199,834 - -0.9 199,834 - +0.3 199,843 + +1.1 199,843 + -0.2 199,844 - +0.8 199,844 - +0.4 199,844 - +0.9 199,844 - -1.5 199,844 - +0.3 199,844 - +0.2 199,844 - +0.3 199,844 - +0.1 199,855 + -0.1 199,855 + -0.4 199,856 - -0.1 199,856 - -0.3 199,856 - -0.4 199,856 - -0.9 199,856 - -1.1 199,860 + +0.3 199,877 + -0.6 199,877 + +0.4 199,878 - +0.2 199,878 - -0.2 199,942 - -0.6 199,942 - -0.0 199,989 - -0.4 200,178 + EX31_RS12650 0.51 +0.1 200,179 - EX31_RS12650 0.51 -0.5 200,189 - EX31_RS12650 0.53 -0.2 200,189 - EX31_RS12650 0.53 +0.3 200,271 + EX31_RS12650 0.75 +0.4 200,271 + EX31_RS12650 0.75 +0.5 200,272 - EX31_RS12650 0.75 +0.4 200,272 - EX31_RS12650 0.75 +0.5 200,317 - EX31_RS12650 0.87 +0.3 200,317 - EX31_RS12650 0.87 +0.3 200,317 - EX31_RS12650 0.87 +0.2 200,350 + +1.9 200,351 - +0.1 200,351 - -0.0 200,351 - -1.4 200,403 + +0.0 200,403 + -1.7 200,403 + +0.2 200,403 + +0.0 200,403 + +0.0 200,404 - +0.8 200,404 - -0.9 200,404 - +2.1 200,404 - -0.1 200,404 - -0.1 200,404 - -0.9 200,404 - +0.1 200,426 + -0.6 200,426 + -0.3 200,427 - -0.1 200,427 - -1.3 200,435 + +0.4 200,443 - +0.5 200,443 - -0.2 200,447 + -0.4 200,448 - +0.8 200,448 - -0.5 200,448 - -1.2 200,449 + -0.1 200,449 + +0.4 200,450 - +0.4 200,450 - -0.1 200,450 - +0.6 200,450 - -1.9 200,450 - -0.6 200,450 - -0.3 200,462 + +0.7 200,462 + -0.3 200,462 + -0.8 200,462 + -0.3 200,462 + +0.5 200,462 + +0.0 200,462 + +0.4 200,462 + +0.1 200,462 + -0.9 200,462 + -0.4 200,462 + +0.2 200,462 + -1.0 200,463 - -0.6 200,463 - +0.5 200,463 - -0.4 200,463 - +1.2 200,463 - -0.2 200,463 - -0.3 200,466 + -2.2 200,466 + -1.5 200,466 + -0.6 200,466 + -1.5 200,466 + +1.4 200,467 - +0.2 200,467 - +0.5 200,467 - -1.5 200,467 - -0.6 200,467 - -0.5 200,467 - -0.6 200,467 - +0.5 200,467 - -0.5 200,467 - +0.5 200,467 - -1.0 200,467 - -0.0 200,467 - -0.1 200,467 - -0.8 200,472 + +0.5 200,472 + -2.0 200,472 + +0.0 200,472 + +1.4 200,472 + +0.1 200,473 - -0.4 200,473 - +0.0 200,508 + -0.2 200,508 + -0.3 200,508 + +0.2 200,509 - +0.3
Or see this region's nucleotide sequence