Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20855 and EX31_RS20860 are separated by 3 nucleotides EX31_RS20860 and EX31_RS25595 are separated by 357 nucleotides EX31_RS25595 and EX31_RS20865 are separated by 47 nucleotides EX31_RS20865 and EX31_RS20870 are separated by 37 nucleotides
EX31_RS20855: EX31_RS20855 - colicin, at 818,290 to 819,546
_RS20855
EX31_RS20860: EX31_RS20860 - hypothetical protein, at 819,550 to 820,035
_RS20860
EX31_RS25595: EX31_RS25595 - hypothetical protein, at 820,393 to 820,623
_RS25595
EX31_RS20865: EX31_RS20865 - bacteriocin immunity protein, at 820,671 to 820,925
_RS20865
EX31_RS20870: EX31_RS20870 - colicin, at 820,963 to 821,226
_RS20870
Position (kb) 820
821 Strain fitness (log2 ratio) -2
-1
0
1 at 819.411 kb on + strand, within EX31_RS20855 at 819.524 kb on + strand at 819.539 kb on + strand at 819.578 kb on - strand at 819.612 kb on - strand, within EX31_RS20860 at 819.612 kb on - strand, within EX31_RS20860 at 819.670 kb on + strand, within EX31_RS20860 at 819.671 kb on - strand, within EX31_RS20860 at 819.687 kb on + strand, within EX31_RS20860 at 819.746 kb on + strand, within EX31_RS20860 at 819.747 kb on - strand, within EX31_RS20860 at 819.747 kb on - strand, within EX31_RS20860 at 819.747 kb on - strand, within EX31_RS20860 at 819.747 kb on - strand, within EX31_RS20860 at 819.747 kb on - strand, within EX31_RS20860 at 819.813 kb on + strand, within EX31_RS20860 at 819.885 kb on + strand, within EX31_RS20860 at 820.040 kb on - strand at 820.085 kb on - strand at 820.135 kb on + strand at 820.148 kb on - strand at 820.337 kb on + strand at 820.435 kb on - strand, within EX31_RS25595 at 820.473 kb on + strand, within EX31_RS25595 at 820.489 kb on + strand, within EX31_RS25595 at 820.620 kb on + strand at 820.624 kb on - strand at 820.624 kb on - strand at 820.728 kb on + strand, within EX31_RS20865 at 820.728 kb on + strand, within EX31_RS20865 at 820.728 kb on + strand, within EX31_RS20865 at 820.729 kb on - strand, within EX31_RS20865 at 820.729 kb on - strand, within EX31_RS20865 at 820.834 kb on + strand, within EX31_RS20865 at 820.897 kb on + strand, within EX31_RS20865 at 820.911 kb on - strand at 820.911 kb on - strand at 820.999 kb on - strand, within EX31_RS20870 at 821.022 kb on - strand, within EX31_RS20870 at 821.026 kb on - strand, within EX31_RS20870 at 821.026 kb on - strand, within EX31_RS20870 at 821.096 kb on + strand, within EX31_RS20870 at 821.096 kb on + strand, within EX31_RS20870 at 821.100 kb on + strand, within EX31_RS20870 at 821.100 kb on + strand, within EX31_RS20870 at 821.100 kb on + strand, within EX31_RS20870 at 821.101 kb on - strand, within EX31_RS20870 at 821.101 kb on - strand, within EX31_RS20870 at 821.101 kb on - strand, within EX31_RS20870 at 821.140 kb on + strand, within EX31_RS20870 at 821.150 kb on + strand, within EX31_RS20870 at 821.150 kb on + strand, within EX31_RS20870 at 821.191 kb on - strand, within EX31_RS20870 at 821.365 kb on + strand at 821.366 kb on - strand at 821.366 kb on - strand at 821.366 kb on - strand at 821.366 kb on - strand at 821.408 kb on + strand at 821.409 kb on - strand at 821.409 kb on - strand at 821.454 kb on - strand at 821.485 kb on - strand at 821.561 kb on - strand at 821.561 kb on - strand at 821.561 kb on - strand at 821.563 kb on + strand at 821.563 kb on + strand at 821.563 kb on + strand at 821.563 kb on + strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.573 kb on - strand at 821.592 kb on + strand at 821.592 kb on + strand at 821.593 kb on - strand at 821.593 kb on - strand at 821.593 kb on - strand at 821.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 819,411 + EX31_RS20855 0.89 +0.6 819,524 + +0.4 819,539 + +0.3 819,578 - +0.1 819,612 - EX31_RS20860 0.13 -0.2 819,612 - EX31_RS20860 0.13 +0.4 819,670 + EX31_RS20860 0.25 -0.0 819,671 - EX31_RS20860 0.25 +0.2 819,687 + EX31_RS20860 0.28 -0.1 819,746 + EX31_RS20860 0.40 +1.4 819,747 - EX31_RS20860 0.41 -1.7 819,747 - EX31_RS20860 0.41 -0.0 819,747 - EX31_RS20860 0.41 +0.4 819,747 - EX31_RS20860 0.41 +0.2 819,747 - EX31_RS20860 0.41 -1.1 819,813 + EX31_RS20860 0.54 -0.3 819,885 + EX31_RS20860 0.69 +0.6 820,040 - -0.8 820,085 - +1.5 820,135 + +0.5 820,148 - +0.1 820,337 + -0.8 820,435 - EX31_RS25595 0.18 +0.1 820,473 + EX31_RS25595 0.35 -1.0 820,489 + EX31_RS25595 0.42 -2.3 820,620 + +1.3 820,624 - +0.6 820,624 - +0.0 820,728 + EX31_RS20865 0.22 -0.4 820,728 + EX31_RS20865 0.22 -0.1 820,728 + EX31_RS20865 0.22 +0.6 820,729 - EX31_RS20865 0.23 +0.6 820,729 - EX31_RS20865 0.23 +0.4 820,834 + EX31_RS20865 0.64 +0.2 820,897 + EX31_RS20865 0.89 +0.3 820,911 - +0.3 820,911 - +0.7 820,999 - EX31_RS20870 0.14 +0.9 821,022 - EX31_RS20870 0.22 -1.2 821,026 - EX31_RS20870 0.24 -1.3 821,026 - EX31_RS20870 0.24 +0.4 821,096 + EX31_RS20870 0.50 -0.3 821,096 + EX31_RS20870 0.50 +0.5 821,100 + EX31_RS20870 0.52 +0.6 821,100 + EX31_RS20870 0.52 -0.5 821,100 + EX31_RS20870 0.52 -2.4 821,101 - EX31_RS20870 0.52 -1.6 821,101 - EX31_RS20870 0.52 +0.3 821,101 - EX31_RS20870 0.52 +0.7 821,140 + EX31_RS20870 0.67 +0.0 821,150 + EX31_RS20870 0.71 +0.7 821,150 + EX31_RS20870 0.71 +0.8 821,191 - EX31_RS20870 0.86 -1.0 821,365 + +1.2 821,366 - +0.5 821,366 - -0.2 821,366 - -0.3 821,366 - -1.8 821,408 + -0.8 821,409 - +0.8 821,409 - -0.9 821,454 - +0.0 821,485 - -0.3 821,561 - +1.6 821,561 - -0.6 821,561 - -0.9 821,563 + +0.2 821,563 + +0.0 821,563 + -1.5 821,563 + -1.7 821,564 - +0.4 821,564 - +1.1 821,564 - +0.4 821,573 - -0.8 821,592 + -0.1 821,592 + -1.4 821,593 - -0.4 821,593 - -0.0 821,593 - -0.2 821,606 + -0.1
Or see this region's nucleotide sequence