Experiment: NL-CCM; vial
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24335 and EX31_RS24340 are separated by 67 nucleotides EX31_RS24340 and EX31_RS24345 are separated by 64 nucleotides EX31_RS24345 and EX31_RS24350 are separated by 555 nucleotides
EX31_RS24335: EX31_RS24335 - rhodanese-related sulfurtransferase, at 632,735 to 633,790
_RS24335
EX31_RS24340: EX31_RS24340 - YceI family protein, at 633,858 to 634,433
_RS24340
EX31_RS24345: EX31_RS24345 - cytochrome b, at 634,498 to 635,043
_RS24345
EX31_RS24350: EX31_RS24350 - efflux RND transporter periplasmic adaptor subunit, at 635,599 to 636,741
_RS24350
Position (kb) 634
635
636 Strain fitness (log2 ratio) -2
-1
0
1
2 at 633.565 kb on + strand, within EX31_RS24335 at 633.565 kb on + strand, within EX31_RS24335 at 633.655 kb on + strand, within EX31_RS24335 at 633.766 kb on + strand at 633.802 kb on - strand at 633.840 kb on + strand at 633.840 kb on + strand at 633.840 kb on + strand at 633.840 kb on + strand at 633.841 kb on - strand at 633.859 kb on + strand at 633.859 kb on + strand at 633.860 kb on - strand at 633.860 kb on - strand at 633.860 kb on - strand at 633.860 kb on - strand at 633.860 kb on - strand at 633.860 kb on - strand at 633.860 kb on - strand at 633.860 kb on - strand at 633.870 kb on + strand at 633.871 kb on - strand at 633.871 kb on - strand at 633.888 kb on - strand at 633.926 kb on + strand, within EX31_RS24340 at 633.929 kb on + strand, within EX31_RS24340 at 633.930 kb on - strand, within EX31_RS24340 at 633.930 kb on - strand, within EX31_RS24340 at 634.020 kb on - strand, within EX31_RS24340 at 634.020 kb on - strand, within EX31_RS24340 at 634.020 kb on - strand, within EX31_RS24340 at 634.020 kb on - strand, within EX31_RS24340 at 634.209 kb on - strand, within EX31_RS24340 at 634.277 kb on + strand, within EX31_RS24340 at 634.277 kb on + strand, within EX31_RS24340 at 634.328 kb on + strand, within EX31_RS24340 at 634.451 kb on + strand at 634.460 kb on + strand at 634.461 kb on - strand at 634.461 kb on - strand at 634.461 kb on - strand at 634.461 kb on - strand at 634.471 kb on + strand at 634.472 kb on - strand at 634.472 kb on - strand at 634.472 kb on - strand at 634.472 kb on - strand at 634.472 kb on - strand at 634.475 kb on + strand at 634.476 kb on - strand at 634.476 kb on - strand at 634.476 kb on - strand at 634.476 kb on - strand at 634.476 kb on - strand at 634.476 kb on - strand at 634.800 kb on - strand, within EX31_RS24345 at 634.831 kb on - strand, within EX31_RS24345 at 634.887 kb on + strand, within EX31_RS24345 at 634.888 kb on - strand, within EX31_RS24345 at 634.888 kb on - strand, within EX31_RS24345 at 634.892 kb on - strand, within EX31_RS24345 at 634.892 kb on - strand, within EX31_RS24345 at 634.923 kb on - strand, within EX31_RS24345 at 634.926 kb on - strand, within EX31_RS24345 at 634.926 kb on - strand, within EX31_RS24345 at 634.968 kb on - strand, within EX31_RS24345 at 635.043 kb on + strand at 635.202 kb on - strand at 635.483 kb on - strand at 635.521 kb on + strand at 635.521 kb on + strand at 635.552 kb on + strand at 635.562 kb on - strand at 635.598 kb on + strand at 635.598 kb on + strand at 635.598 kb on + strand at 635.598 kb on + strand at 635.598 kb on + strand at 635.598 kb on + strand at 635.599 kb on - strand at 635.622 kb on + strand at 635.623 kb on - strand at 635.623 kb on - strand at 635.652 kb on - strand at 635.743 kb on + strand, within EX31_RS24350 at 635.744 kb on - strand, within EX31_RS24350 at 635.857 kb on + strand, within EX31_RS24350 at 635.928 kb on + strand, within EX31_RS24350 at 635.964 kb on - strand, within EX31_RS24350
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; vial remove 633,565 + EX31_RS24335 0.79 -0.3 633,565 + EX31_RS24335 0.79 -0.8 633,655 + EX31_RS24335 0.87 +0.8 633,766 + -0.3 633,802 - -1.3 633,840 + +0.6 633,840 + +0.7 633,840 + +0.1 633,840 + +0.2 633,841 - -0.6 633,859 + -1.7 633,859 + -0.0 633,860 - -1.5 633,860 - -0.0 633,860 - +0.5 633,860 - +0.7 633,860 - -0.3 633,860 - +1.0 633,860 - +0.5 633,860 - +0.8 633,870 + -0.7 633,871 - -1.1 633,871 - -0.3 633,888 - -0.4 633,926 + EX31_RS24340 0.12 -0.4 633,929 + EX31_RS24340 0.12 +0.2 633,930 - EX31_RS24340 0.12 +1.4 633,930 - EX31_RS24340 0.12 +0.5 634,020 - EX31_RS24340 0.28 -0.3 634,020 - EX31_RS24340 0.28 +0.8 634,020 - EX31_RS24340 0.28 +0.6 634,020 - EX31_RS24340 0.28 +0.2 634,209 - EX31_RS24340 0.61 -0.7 634,277 + EX31_RS24340 0.73 -1.0 634,277 + EX31_RS24340 0.73 -1.1 634,328 + EX31_RS24340 0.82 +1.0 634,451 + -0.4 634,460 + -0.1 634,461 - +0.2 634,461 - +0.9 634,461 - -2.3 634,461 - +1.4 634,471 + +0.1 634,472 - +0.1 634,472 - +0.3 634,472 - +1.0 634,472 - +2.1 634,472 - -0.2 634,475 + +0.5 634,476 - -0.2 634,476 - +0.6 634,476 - -0.8 634,476 - +0.1 634,476 - -1.5 634,476 - -0.6 634,800 - EX31_RS24345 0.55 -0.5 634,831 - EX31_RS24345 0.61 -0.7 634,887 + EX31_RS24345 0.71 -0.0 634,888 - EX31_RS24345 0.71 -0.7 634,888 - EX31_RS24345 0.71 -0.8 634,892 - EX31_RS24345 0.72 +0.4 634,892 - EX31_RS24345 0.72 -1.3 634,923 - EX31_RS24345 0.78 +0.4 634,926 - EX31_RS24345 0.78 -0.7 634,926 - EX31_RS24345 0.78 -1.1 634,968 - EX31_RS24345 0.86 +0.0 635,043 + +0.8 635,202 - +0.4 635,483 - -0.3 635,521 + +0.3 635,521 + -0.3 635,552 + +0.4 635,562 - +0.4 635,598 + -0.2 635,598 + -0.8 635,598 + +0.0 635,598 + +0.0 635,598 + -0.3 635,598 + +0.6 635,599 - -1.3 635,622 + -0.7 635,623 - +0.1 635,623 - -1.2 635,652 - -0.4 635,743 + EX31_RS24350 0.13 -0.2 635,744 - EX31_RS24350 0.13 +0.3 635,857 + EX31_RS24350 0.23 -0.3 635,928 + EX31_RS24350 0.29 -1.5 635,964 - EX31_RS24350 0.32 -0.6
Or see this region's nucleotide sequence