Strain Fitness in Rahnella sp. WP5 around EX31_RS23965

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23955 and EX31_RS23960 are separated by 42 nucleotidesEX31_RS23960 and EX31_RS23965 are separated by 20 nucleotidesEX31_RS23965 and EX31_RS23970 overlap by 1 nucleotidesEX31_RS23970 and EX31_RS23975 overlap by 4 nucleotides EX31_RS23955: EX31_RS23955 - drug/metabolite exporter YedA, at 560,504 to 561,421 _RS23955 EX31_RS23960: EX31_RS23960 - DUF3833 domain-containing protein, at 561,464 to 562,000 _RS23960 EX31_RS23965: EX31_RS23965 - hypothetical protein, at 562,021 to 562,548 _RS23965 EX31_RS23970: EX31_RS23970 - DUF2878 domain-containing protein, at 562,548 to 563,048 _RS23970 EX31_RS23975: EX31_RS23975 - class I SAM-dependent methyltransferase, at 563,045 to 564,277 _RS23975 Position (kb) 562 563Strain fitness (log2 ratio) -2 -1 0 1 2at 561.171 kb on + strand, within EX31_RS23955at 561.171 kb on + strand, within EX31_RS23955at 561.172 kb on - strand, within EX31_RS23955at 561.200 kb on + strand, within EX31_RS23955at 561.200 kb on + strand, within EX31_RS23955at 561.200 kb on + strand, within EX31_RS23955at 561.201 kb on - strand, within EX31_RS23955at 561.201 kb on - strand, within EX31_RS23955at 561.201 kb on - strand, within EX31_RS23955at 561.202 kb on + strand, within EX31_RS23955at 561.202 kb on + strand, within EX31_RS23955at 561.202 kb on + strand, within EX31_RS23955at 561.202 kb on + strand, within EX31_RS23955at 561.202 kb on + strand, within EX31_RS23955at 561.202 kb on + strand, within EX31_RS23955at 561.202 kb on + strand, within EX31_RS23955at 561.202 kb on + strand, within EX31_RS23955at 561.202 kb on + strand, within EX31_RS23955at 561.245 kb on + strand, within EX31_RS23955at 561.245 kb on + strand, within EX31_RS23955at 561.245 kb on + strand, within EX31_RS23955at 561.245 kb on + strand, within EX31_RS23955at 561.245 kb on + strand, within EX31_RS23955at 561.245 kb on + strand, within EX31_RS23955at 561.245 kb on + strand, within EX31_RS23955at 561.246 kb on - strand, within EX31_RS23955at 561.251 kb on + strand, within EX31_RS23955at 561.251 kb on + strand, within EX31_RS23955at 561.251 kb on + strand, within EX31_RS23955at 561.251 kb on + strand, within EX31_RS23955at 561.251 kb on + strand, within EX31_RS23955at 561.251 kb on + strand, within EX31_RS23955at 561.252 kb on - strand, within EX31_RS23955at 561.252 kb on - strand, within EX31_RS23955at 561.388 kb on + strandat 561.388 kb on + strandat 561.389 kb on - strandat 561.605 kb on + strand, within EX31_RS23960at 561.619 kb on - strand, within EX31_RS23960at 561.619 kb on - strand, within EX31_RS23960at 561.690 kb on + strand, within EX31_RS23960at 561.690 kb on + strand, within EX31_RS23960at 561.690 kb on + strand, within EX31_RS23960at 561.690 kb on + strand, within EX31_RS23960at 561.691 kb on - strand, within EX31_RS23960at 561.691 kb on - strand, within EX31_RS23960at 561.691 kb on - strand, within EX31_RS23960at 561.691 kb on - strand, within EX31_RS23960at 561.838 kb on - strand, within EX31_RS23960at 561.838 kb on - strand, within EX31_RS23960at 561.926 kb on - strand, within EX31_RS23960at 561.935 kb on - strand, within EX31_RS23960at 561.947 kb on + strandat 561.948 kb on - strandat 562.000 kb on + strandat 562.001 kb on - strandat 562.001 kb on - strandat 562.001 kb on - strandat 562.011 kb on + strandat 562.011 kb on + strandat 562.011 kb on + strandat 562.011 kb on + strandat 562.011 kb on + strandat 562.011 kb on + strandat 562.023 kb on - strandat 562.057 kb on + strandat 562.058 kb on - strandat 562.067 kb on + strandat 562.286 kb on - strand, within EX31_RS23965at 562.352 kb on + strand, within EX31_RS23965at 562.391 kb on + strand, within EX31_RS23965at 562.391 kb on + strand, within EX31_RS23965at 562.391 kb on + strand, within EX31_RS23965at 562.391 kb on + strand, within EX31_RS23965at 562.395 kb on + strand, within EX31_RS23965at 562.395 kb on + strand, within EX31_RS23965at 562.424 kb on + strand, within EX31_RS23965at 562.642 kb on + strand, within EX31_RS23970at 562.643 kb on - strand, within EX31_RS23970at 562.690 kb on + strand, within EX31_RS23970at 562.693 kb on + strand, within EX31_RS23970at 562.694 kb on - strand, within EX31_RS23970at 562.694 kb on - strand, within EX31_RS23970at 562.750 kb on - strand, within EX31_RS23970at 562.750 kb on - strand, within EX31_RS23970at 562.753 kb on + strand, within EX31_RS23970at 562.795 kb on - strand, within EX31_RS23970at 562.925 kb on + strand, within EX31_RS23970at 563.113 kb on - strandat 563.121 kb on + strandat 563.121 kb on + strandat 563.122 kb on - strandat 563.145 kb on + strandat 563.146 kb on - strandat 563.296 kb on + strand, within EX31_RS23975at 563.297 kb on - strand, within EX31_RS23975at 563.338 kb on + strand, within EX31_RS23975at 563.367 kb on + strand, within EX31_RS23975at 563.367 kb on + strand, within EX31_RS23975at 563.458 kb on - strand, within EX31_RS23975at 563.527 kb on - strand, within EX31_RS23975

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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561,171 + EX31_RS23955 0.73 +1.7
561,171 + EX31_RS23955 0.73 +0.5
561,172 - EX31_RS23955 0.73 -0.5
561,200 + EX31_RS23955 0.76 +0.4
561,200 + EX31_RS23955 0.76 +0.2
561,200 + EX31_RS23955 0.76 +0.0
561,201 - EX31_RS23955 0.76 -0.2
561,201 - EX31_RS23955 0.76 +0.3
561,201 - EX31_RS23955 0.76 +0.3
561,202 + EX31_RS23955 0.76 +0.4
561,202 + EX31_RS23955 0.76 -0.7
561,202 + EX31_RS23955 0.76 +0.5
561,202 + EX31_RS23955 0.76 -0.8
561,202 + EX31_RS23955 0.76 +0.6
561,202 + EX31_RS23955 0.76 +0.7
561,202 + EX31_RS23955 0.76 +0.8
561,202 + EX31_RS23955 0.76 +0.1
561,202 + EX31_RS23955 0.76 -1.2
561,245 + EX31_RS23955 0.81 +0.4
561,245 + EX31_RS23955 0.81 +1.4
561,245 + EX31_RS23955 0.81 +0.2
561,245 + EX31_RS23955 0.81 +0.5
561,245 + EX31_RS23955 0.81 -0.5
561,245 + EX31_RS23955 0.81 -0.4
561,245 + EX31_RS23955 0.81 -0.9
561,246 - EX31_RS23955 0.81 +1.8
561,251 + EX31_RS23955 0.81 +0.3
561,251 + EX31_RS23955 0.81 -0.6
561,251 + EX31_RS23955 0.81 -1.6
561,251 + EX31_RS23955 0.81 -1.1
561,251 + EX31_RS23955 0.81 -0.1
561,251 + EX31_RS23955 0.81 +1.1
561,252 - EX31_RS23955 0.81 +0.3
561,252 - EX31_RS23955 0.81 -1.7
561,388 + -1.3
561,388 + -0.2
561,389 - -0.6
561,605 + EX31_RS23960 0.26 +0.5
561,619 - EX31_RS23960 0.29 +0.6
561,619 - EX31_RS23960 0.29 -1.1
561,690 + EX31_RS23960 0.42 -0.5
561,690 + EX31_RS23960 0.42 +0.4
561,690 + EX31_RS23960 0.42 -0.1
561,690 + EX31_RS23960 0.42 -1.1
561,691 - EX31_RS23960 0.42 -0.6
561,691 - EX31_RS23960 0.42 +2.2
561,691 - EX31_RS23960 0.42 -0.1
561,691 - EX31_RS23960 0.42 +0.2
561,838 - EX31_RS23960 0.70 -0.9
561,838 - EX31_RS23960 0.70 +0.4
561,926 - EX31_RS23960 0.86 +0.2
561,935 - EX31_RS23960 0.88 +0.6
561,947 + -1.3
561,948 - -1.2
562,000 + +0.7
562,001 - +0.1
562,001 - -1.2
562,001 - +1.5
562,011 + +0.4
562,011 + +0.0
562,011 + -0.0
562,011 + -0.8
562,011 + +0.9
562,011 + +0.9
562,023 - +0.8
562,057 + -0.9
562,058 - -0.6
562,067 + +0.6
562,286 - EX31_RS23965 0.50 -0.4
562,352 + EX31_RS23965 0.63 +0.2
562,391 + EX31_RS23965 0.70 -0.2
562,391 + EX31_RS23965 0.70 -1.8
562,391 + EX31_RS23965 0.70 -1.4
562,391 + EX31_RS23965 0.70 -1.4
562,395 + EX31_RS23965 0.71 +0.2
562,395 + EX31_RS23965 0.71 +0.6
562,424 + EX31_RS23965 0.76 -0.0
562,642 + EX31_RS23970 0.19 +0.0
562,643 - EX31_RS23970 0.19 +1.2
562,690 + EX31_RS23970 0.28 -0.1
562,693 + EX31_RS23970 0.29 -1.3
562,694 - EX31_RS23970 0.29 +0.7
562,694 - EX31_RS23970 0.29 +0.3
562,750 - EX31_RS23970 0.40 -0.2
562,750 - EX31_RS23970 0.40 +0.4
562,753 + EX31_RS23970 0.41 -0.1
562,795 - EX31_RS23970 0.49 -1.3
562,925 + EX31_RS23970 0.75 -1.2
563,113 - +0.8
563,121 + +0.1
563,121 + +0.1
563,122 - +0.0
563,145 + -0.7
563,146 - -0.9
563,296 + EX31_RS23975 0.20 +0.1
563,297 - EX31_RS23975 0.20 -0.1
563,338 + EX31_RS23975 0.24 -1.9
563,367 + EX31_RS23975 0.26 -0.2
563,367 + EX31_RS23975 0.26 +0.3
563,458 - EX31_RS23975 0.33 +0.1
563,527 - EX31_RS23975 0.39 -0.1

Or see this region's nucleotide sequence