Strain Fitness in Rahnella sp. WP5 around EX31_RS23940

Experiment: NL-CCM; vial

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23935 and EX31_RS23940 are separated by 61 nucleotidesEX31_RS23940 and EX31_RS23945 overlap by 4 nucleotidesEX31_RS23945 and EX31_RS23950 overlap by 4 nucleotides EX31_RS23935: EX31_RS23935 - ABC transporter substrate-binding protein, at 556,248 to 557,186 _RS23935 EX31_RS23940: EX31_RS23940 - ABC transporter permease, at 557,248 to 558,417 _RS23940 EX31_RS23945: EX31_RS23945 - ABC transporter ATP-binding protein, at 558,414 to 559,358 _RS23945 EX31_RS23950: EX31_RS23950 - ABC transporter permease, at 559,355 to 560,113 _RS23950 Position (kb) 557 558 559Strain fitness (log2 ratio) -3 -2 -1 0 1at 556.271 kb on - strandat 556.312 kb on + strandat 556.394 kb on + strand, within EX31_RS23935at 556.394 kb on + strand, within EX31_RS23935at 556.394 kb on + strand, within EX31_RS23935at 556.395 kb on - strand, within EX31_RS23935at 556.395 kb on - strand, within EX31_RS23935at 556.430 kb on + strand, within EX31_RS23935at 556.430 kb on + strand, within EX31_RS23935at 556.431 kb on - strand, within EX31_RS23935at 556.436 kb on + strand, within EX31_RS23935at 556.500 kb on + strand, within EX31_RS23935at 556.722 kb on + strand, within EX31_RS23935at 556.722 kb on + strand, within EX31_RS23935at 556.722 kb on + strand, within EX31_RS23935at 556.722 kb on + strand, within EX31_RS23935at 556.722 kb on + strand, within EX31_RS23935at 556.722 kb on + strand, within EX31_RS23935at 556.722 kb on + strand, within EX31_RS23935at 556.723 kb on - strand, within EX31_RS23935at 556.723 kb on - strand, within EX31_RS23935at 556.723 kb on - strand, within EX31_RS23935at 556.723 kb on - strand, within EX31_RS23935at 556.723 kb on - strand, within EX31_RS23935at 556.723 kb on - strand, within EX31_RS23935at 556.810 kb on - strand, within EX31_RS23935at 556.810 kb on - strand, within EX31_RS23935at 556.824 kb on - strand, within EX31_RS23935at 556.824 kb on - strand, within EX31_RS23935at 556.872 kb on - strand, within EX31_RS23935at 556.981 kb on + strand, within EX31_RS23935at 556.981 kb on + strand, within EX31_RS23935at 556.981 kb on + strand, within EX31_RS23935at 556.981 kb on + strand, within EX31_RS23935at 557.154 kb on + strandat 557.154 kb on + strandat 557.154 kb on + strandat 557.242 kb on - strandat 557.255 kb on - strandat 557.758 kb on + strand, within EX31_RS23940at 557.875 kb on - strand, within EX31_RS23940at 557.913 kb on + strand, within EX31_RS23940at 557.913 kb on + strand, within EX31_RS23940at 557.913 kb on + strand, within EX31_RS23940at 558.055 kb on + strand, within EX31_RS23940at 558.055 kb on + strand, within EX31_RS23940at 558.218 kb on + strand, within EX31_RS23940at 558.589 kb on + strand, within EX31_RS23945at 558.589 kb on + strand, within EX31_RS23945at 558.590 kb on - strand, within EX31_RS23945at 558.590 kb on - strand, within EX31_RS23945at 558.880 kb on + strand, within EX31_RS23945at 558.880 kb on + strand, within EX31_RS23945at 558.880 kb on + strand, within EX31_RS23945at 558.881 kb on - strand, within EX31_RS23945at 558.881 kb on - strand, within EX31_RS23945at 558.881 kb on - strand, within EX31_RS23945at 558.934 kb on + strand, within EX31_RS23945at 558.960 kb on - strand, within EX31_RS23945at 558.982 kb on + strand, within EX31_RS23945at 559.033 kb on + strand, within EX31_RS23945at 559.135 kb on + strand, within EX31_RS23945

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; vial
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556,271 - -2.0
556,312 + +0.5
556,394 + EX31_RS23935 0.16 +0.4
556,394 + EX31_RS23935 0.16 -0.1
556,394 + EX31_RS23935 0.16 +0.3
556,395 - EX31_RS23935 0.16 -0.2
556,395 - EX31_RS23935 0.16 +0.6
556,430 + EX31_RS23935 0.19 +0.2
556,430 + EX31_RS23935 0.19 +0.3
556,431 - EX31_RS23935 0.19 +0.5
556,436 + EX31_RS23935 0.20 -0.4
556,500 + EX31_RS23935 0.27 -0.4
556,722 + EX31_RS23935 0.50 +0.2
556,722 + EX31_RS23935 0.50 -0.2
556,722 + EX31_RS23935 0.50 +0.0
556,722 + EX31_RS23935 0.50 +0.5
556,722 + EX31_RS23935 0.50 +0.3
556,722 + EX31_RS23935 0.50 +0.7
556,722 + EX31_RS23935 0.50 -0.1
556,723 - EX31_RS23935 0.51 +1.1
556,723 - EX31_RS23935 0.51 -0.3
556,723 - EX31_RS23935 0.51 -0.0
556,723 - EX31_RS23935 0.51 +0.3
556,723 - EX31_RS23935 0.51 +0.9
556,723 - EX31_RS23935 0.51 +0.5
556,810 - EX31_RS23935 0.60 -0.7
556,810 - EX31_RS23935 0.60 +0.6
556,824 - EX31_RS23935 0.61 -0.2
556,824 - EX31_RS23935 0.61 +0.9
556,872 - EX31_RS23935 0.66 -2.0
556,981 + EX31_RS23935 0.78 -2.5
556,981 + EX31_RS23935 0.78 -0.3
556,981 + EX31_RS23935 0.78 -0.7
556,981 + EX31_RS23935 0.78 +0.1
557,154 + +0.6
557,154 + -1.2
557,154 + +0.4
557,242 - -2.0
557,255 - -0.4
557,758 + EX31_RS23940 0.44 +1.6
557,875 - EX31_RS23940 0.54 -0.4
557,913 + EX31_RS23940 0.57 -1.5
557,913 + EX31_RS23940 0.57 -0.6
557,913 + EX31_RS23940 0.57 -0.9
558,055 + EX31_RS23940 0.69 -0.7
558,055 + EX31_RS23940 0.69 +0.7
558,218 + EX31_RS23940 0.83 -0.6
558,589 + EX31_RS23945 0.19 +0.9
558,589 + EX31_RS23945 0.19 +0.0
558,590 - EX31_RS23945 0.19 -1.8
558,590 - EX31_RS23945 0.19 -0.5
558,880 + EX31_RS23945 0.49 +0.9
558,880 + EX31_RS23945 0.49 -2.3
558,880 + EX31_RS23945 0.49 +0.7
558,881 - EX31_RS23945 0.49 -2.0
558,881 - EX31_RS23945 0.49 -1.5
558,881 - EX31_RS23945 0.49 +0.4
558,934 + EX31_RS23945 0.55 +0.1
558,960 - EX31_RS23945 0.58 +0.3
558,982 + EX31_RS23945 0.60 +0.2
559,033 + EX31_RS23945 0.66 -3.2
559,135 + EX31_RS23945 0.76 -2.1

Or see this region's nucleotide sequence